Wall clock time and date at job start Mon Mar 30 2020 06:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47235 * 2 1 4 4 H 1.09000 * 109.47442 * 54.99553 * 3 2 1 5 5 C 1.50693 * 109.47430 * 175.00081 * 3 2 1 6 6 H 1.08002 * 120.00503 * 119.99325 * 5 3 2 7 7 C 1.37882 * 119.99694 * 300.00217 * 5 3 2 8 8 N 1.31512 * 119.99649 * 180.02562 * 7 5 3 9 9 Si 1.86790 * 120.00178 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47190 * 90.00446 * 9 7 5 11 11 H 1.48505 * 109.47473 * 210.00646 * 9 7 5 12 12 H 1.48509 * 109.47202 * 330.00574 * 9 7 5 13 13 O 1.45207 * 109.46598 * 294.99811 * 3 2 1 14 14 C 1.34876 * 116.99662 * 90.00440 * 13 3 2 15 15 O 1.21610 * 120.00446 * 359.97438 * 14 13 3 16 16 C 1.46506 * 119.99526 * 180.02562 * 14 13 3 17 17 C 1.36765 * 126.17469 * 179.97438 * 16 14 13 18 18 N 1.30912 * 113.93072 * 179.97438 * 17 16 14 19 19 C 1.29397 * 117.46882 * 0.02562 * 18 17 16 20 20 C 1.50699 * 124.70799 * 179.97438 * 19 18 17 21 21 S 1.70927 * 110.58337 * 359.97438 * 19 18 17 22 22 H 1.09000 * 109.47267 * 60.00439 * 1 2 3 23 23 H 1.09008 * 109.47435 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47566 * 299.99907 * 1 2 3 25 25 H 1.08998 * 109.46820 * 239.99684 * 2 1 3 26 26 H 1.09008 * 109.46731 * 119.99893 * 2 1 3 27 27 H 0.96998 * 119.99827 * 179.97438 * 8 7 5 28 28 H 1.07995 * 123.03268 * 359.73198 * 17 16 14 29 29 H 1.08999 * 109.47094 * 270.04287 * 20 19 18 30 30 H 1.08996 * 109.47109 * 30.04357 * 20 19 18 31 31 H 1.09002 * 109.46717 * 150.04120 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5418 1.4443 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1432 0.8783 1.2280 8 7 5.4538 0.8804 1.3363 9 14 3.0963 0.1100 2.5706 10 1 2.8745 -1.3261 2.2645 11 1 3.7940 0.2360 3.8755 12 1 1.7880 0.8093 2.6394 13 8 1.6559 2.0915 -1.2408 14 6 0.4670 2.7284 -1.2561 15 8 -0.2295 2.7401 -0.2593 16 6 0.0142 3.4051 -2.4741 17 6 -1.1621 4.0850 -2.6300 18 7 -1.3242 4.5992 -3.8230 19 6 -0.3810 4.4087 -4.6882 20 6 -0.3982 4.9251 -6.1038 21 16 0.8869 3.4902 -4.0025 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8901 27 1 5.8769 0.4826 2.1132 28 1 -1.8931 4.1853 -1.8414 29 1 -0.8622 4.1844 -6.7551 30 1 -0.9681 5.8532 -6.1452 31 1 0.6235 5.1110 -6.4351 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187955041.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:12 Heat of formation + Delta-G solvation = -65.178594 kcal Electronic energy + Delta-G solvation = -16618.654903 eV Core-core repulsion = 13798.437690 eV Total energy + Delta-G solvation = -2820.217213 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.61858 -40.60677 -37.80333 -35.58145 -34.00449 -33.26028 -30.27623 -29.53103 -25.85565 -24.84525 -23.83058 -22.11546 -20.66909 -19.75477 -18.97980 -18.14308 -17.60683 -17.42355 -16.63609 -15.92586 -15.62501 -15.30001 -14.89440 -14.51606 -14.25376 -13.94035 -13.70690 -13.42789 -13.24626 -13.20707 -13.14398 -12.67267 -12.61378 -12.07215 -11.82627 -11.56979 -11.41865 -11.19494 -10.85236 -10.77929 -10.64591 -9.98663 -8.46619 -6.55779 -0.96890 0.07694 0.54488 1.16600 1.22432 1.30342 1.39836 1.74131 1.85318 2.18104 2.85479 3.04699 3.71420 3.91125 4.05073 4.08996 4.13887 4.27151 4.52894 4.61392 4.69060 4.88740 4.90336 4.91460 4.98454 5.16514 5.26466 5.29678 5.53137 6.07924 6.44178 6.47616 6.71398 7.08437 8.69189 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.037639 B = 0.005797 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.733374 B = 4828.735202 C = 5250.847586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.147 4.147 3 C 0.202 3.798 4 H 0.033 0.967 5 C -0.542 4.542 6 H 0.047 0.953 7 C 0.034 3.966 8 N -0.928 5.928 9 Si 0.936 3.064 10 H -0.249 1.249 11 H -0.283 1.283 12 H -0.255 1.255 13 O -0.348 6.348 14 C 0.534 3.466 15 O -0.524 6.524 16 C -0.324 4.324 17 C 0.142 3.858 18 N -0.502 5.502 19 C 0.065 3.935 20 C -0.084 4.084 21 S 0.233 5.767 22 H 0.043 0.957 23 H 0.076 0.924 24 H 0.049 0.951 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.276 0.724 28 H 0.197 0.803 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.605 4.331 -13.352 18.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.184 4.184 3 C 0.148 3.852 4 H 0.051 0.949 5 C -0.579 4.579 6 H 0.065 0.935 7 C -0.166 4.166 8 N -0.566 5.566 9 Si 0.760 3.240 10 H -0.174 1.174 11 H -0.209 1.209 12 H -0.179 1.179 13 O -0.265 6.265 14 C 0.379 3.621 15 O -0.417 6.417 16 C -0.447 4.447 17 C -0.019 4.019 18 N -0.217 5.217 19 C -0.208 4.208 20 C -0.144 4.144 21 S 0.491 5.509 22 H 0.062 0.938 23 H 0.095 0.905 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.214 0.786 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.043 4.185 -13.558 18.611 hybrid contribution -0.476 -0.271 1.848 1.927 sum -12.519 3.914 -11.710 17.583 Atomic orbital electron populations 1.21822 0.94540 1.02160 1.01376 1.22284 0.96502 0.97261 1.02375 1.20756 0.94191 0.89852 0.80380 0.94908 1.20932 0.89431 1.40156 1.07393 0.93461 1.25522 0.96072 0.95459 0.99549 1.69948 1.10347 1.45301 1.30997 0.86043 0.79361 0.80402 0.78160 1.17388 1.20938 1.17921 1.86583 1.34987 1.63161 1.41724 1.19778 0.79884 0.75822 0.86659 1.90806 1.55864 1.59745 1.35243 1.25008 1.04020 1.16496 0.99151 1.22688 0.94114 0.90507 0.94557 1.66354 1.29760 1.24032 1.01580 1.28489 0.92170 0.97431 1.02661 1.20844 1.06088 1.03446 0.84014 1.84265 1.20128 1.46079 1.00398 0.93785 0.90471 0.93205 0.90730 0.91927 0.91463 0.78591 0.86858 0.87825 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.33 8.56 71.98 0.62 -4.72 16 2 C -0.15 -6.48 5.15 30.59 0.16 -6.32 16 3 C 0.20 10.27 1.84 29.84 0.06 10.33 16 4 H 0.03 1.77 6.22 -2.39 -0.01 1.75 16 5 C -0.54 -31.81 9.48 25.60 0.24 -31.57 16 6 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 7 C 0.03 1.97 5.45 84.66 0.46 2.43 16 8 N -0.93 -56.56 13.96 21.45 0.30 -56.26 16 9 Si 0.94 43.88 24.41 68.60 1.67 45.55 16 10 H -0.25 -10.72 6.83 99.48 0.68 -10.04 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.25 -11.70 6.53 99.48 0.65 -11.05 16 13 O -0.35 -16.33 9.70 -57.90 -0.56 -16.90 16 14 C 0.53 22.08 6.38 69.98 0.45 22.53 16 15 O -0.52 -23.13 14.06 19.47 0.27 -22.86 16 16 C -0.32 -10.63 6.52 24.08 0.16 -10.47 16 17 C 0.14 4.00 11.16 84.48 0.94 4.94 16 18 N -0.50 -12.60 10.50 -189.53 -1.99 -14.59 16 19 C 0.06 1.32 7.37 88.47 0.65 1.97 16 20 C -0.08 -0.84 10.46 71.24 0.74 -0.10 16 21 S 0.23 5.89 23.04 -56.49 -1.30 4.59 16 22 H 0.04 1.65 6.06 -2.39 -0.01 1.63 16 23 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 24 H 0.05 1.94 7.79 -2.38 -0.02 1.92 16 25 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 26 H 0.06 2.79 3.22 -2.38 -0.01 2.78 16 27 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 28 H 0.20 5.01 8.06 -2.91 -0.02 4.99 16 29 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -70.03 276.93 3.94 -66.09 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.07 Total: 5.34 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 4.48 Total: -10.97 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -1.69 Total: -70.85 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -0.29 Total: -39.75 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.67 Total: 45.55 kcal Atomic # 16 Polarization: 5.89 SS G_CDS: -1.30 Total: 4.59 kcal Total: -70.03 3.94 -66.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187955041.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.915 kcal (2) G-P(sol) polarization free energy of solvation -70.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds