Wall clock time and date at job start Mon Mar 30 2020 06:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 O 1.45208 * 109.47166 * 65.00081 * 3 2 1 14 14 C 1.34880 * 116.99632 * 270.00202 * 13 3 2 15 15 O 1.21613 * 120.00127 * 0.02562 * 14 13 3 16 16 C 1.46503 * 119.99742 * 179.97438 * 14 13 3 17 17 C 1.36758 * 126.17983 * 180.02562 * 16 14 13 18 18 N 1.30906 * 113.93037 * 179.97438 * 17 16 14 19 19 C 1.29391 * 117.47462 * 359.97438 * 18 17 16 20 20 C 1.50700 * 124.70999 * 180.02562 * 19 18 17 21 21 S 1.70932 * 110.58107 * 359.75150 * 19 18 17 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 28 28 H 1.08003 * 123.03087 * 359.95738 * 17 16 14 29 29 H 1.09002 * 109.46965 * 89.98163 * 20 19 18 30 30 H 1.09001 * 109.46644 * 209.97772 * 20 19 18 31 31 H 1.08995 * 109.47319 * 329.97623 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 8 1.6560 2.0916 1.2408 14 6 0.4671 2.7285 1.2561 15 8 -0.2294 2.7401 0.2592 16 6 0.0143 3.4053 2.4739 17 6 -1.1620 4.0853 2.6299 18 7 -1.3244 4.5986 3.8231 19 6 -0.3816 4.4075 4.6885 20 6 -0.3993 4.9230 6.1045 21 16 0.8831 3.4828 4.0050 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8292 -0.0604 -2.9503 28 1 -1.8909 4.1896 1.8398 29 1 -0.8633 4.1817 6.7552 30 1 0.6223 5.1089 6.4362 31 1 -0.9694 5.8510 6.1463 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187955064.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:14 Heat of formation + Delta-G solvation = -72.406064 kcal Electronic energy + Delta-G solvation = -16539.157003 eV Core-core repulsion = 13718.626383 eV Total energy + Delta-G solvation = -2820.530620 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.50902 -40.55389 -37.65891 -35.54343 -33.54134 -33.14282 -30.15941 -29.15389 -25.88759 -25.09581 -23.67440 -21.84678 -20.56664 -19.66001 -18.77931 -17.97963 -17.44353 -17.21809 -16.56270 -15.90843 -15.61321 -14.94331 -14.79572 -14.51631 -14.11484 -13.50782 -13.38363 -13.35813 -13.19069 -13.15778 -12.83853 -12.66169 -12.59267 -12.16418 -11.81511 -11.67223 -11.42638 -10.88080 -10.84578 -10.64404 -10.53796 -9.97107 -8.28621 -6.45980 -0.94702 0.09037 0.55454 1.21002 1.41678 1.45409 1.53205 1.86786 1.89399 2.40167 3.01102 3.06202 3.81741 3.96362 4.15364 4.33876 4.35998 4.52562 4.62042 4.69868 4.78764 4.90464 5.04424 5.17137 5.17233 5.29820 5.47955 5.62704 5.88900 6.04845 6.45383 6.55802 6.83369 7.24606 8.78139 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.031243 B = 0.005658 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.987847 B = 4947.701547 C = 5521.869524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.130 4.130 3 C 0.226 3.774 4 H 0.010 0.990 5 C -0.552 4.552 6 H 0.066 0.934 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.981 3.019 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.270 1.270 13 O -0.357 6.357 14 C 0.530 3.470 15 O -0.531 6.531 16 C -0.323 4.323 17 C 0.137 3.863 18 N -0.502 5.502 19 C 0.063 3.937 20 C -0.083 4.083 21 S 0.239 5.761 22 H 0.037 0.963 23 H 0.032 0.968 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.271 0.729 28 H 0.193 0.807 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.775 6.030 15.774 17.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.168 4.168 3 C 0.173 3.827 4 H 0.027 0.973 5 C -0.589 4.589 6 H 0.085 0.915 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.804 3.196 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.195 1.195 13 O -0.274 6.274 14 C 0.375 3.625 15 O -0.423 6.423 16 C -0.445 4.445 17 C -0.023 4.023 18 N -0.217 5.217 19 C -0.210 4.210 20 C -0.143 4.143 21 S 0.497 5.503 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.108 0.892 27 H 0.081 0.919 28 H 0.210 0.790 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.380 5.823 15.899 17.489 hybrid contribution -0.039 -0.090 -1.666 1.669 sum -4.419 5.733 14.232 15.967 Atomic orbital electron populations 1.21725 0.96361 1.00728 1.00015 1.21883 0.94404 0.97938 1.02558 1.20481 0.94778 0.89319 0.78079 0.97257 1.21266 0.90204 1.40355 1.07118 0.91549 1.25788 1.04259 0.93728 0.94231 1.70002 1.37566 1.37713 1.09800 0.85260 0.77580 0.78777 0.77970 1.18772 1.20158 1.19451 1.86561 1.34590 1.63086 1.43143 1.19822 0.80197 0.75938 0.86537 1.90810 1.56037 1.59889 1.35601 1.25063 1.04066 1.16146 0.99235 1.22640 0.94155 0.90913 0.94585 1.66336 1.29764 1.24106 1.01506 1.28503 0.92293 0.97517 1.02687 1.20842 1.06141 1.03414 0.83896 1.84092 1.20439 1.45793 0.99970 0.94343 0.94865 0.91773 0.93455 0.89191 0.91931 0.78992 0.86921 0.87271 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.87 8.56 71.98 0.62 -5.25 16 2 C -0.13 -6.61 5.49 30.59 0.17 -6.44 16 3 C 0.23 12.49 2.25 29.85 0.07 12.56 16 4 H 0.01 0.60 7.16 -2.39 -0.02 0.58 16 5 C -0.55 -31.37 8.90 25.60 0.23 -31.14 16 6 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 7 C 0.02 1.10 5.29 84.65 0.45 1.55 16 8 N -0.91 -52.08 11.30 21.45 0.24 -51.84 16 9 Si 0.98 42.60 29.54 68.60 2.03 44.63 16 10 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 O -0.36 -17.67 9.70 -57.94 -0.56 -18.23 16 14 C 0.53 23.73 6.38 69.98 0.45 24.18 16 15 O -0.53 -26.05 14.06 19.47 0.27 -25.77 16 16 C -0.32 -11.26 6.52 24.08 0.16 -11.10 16 17 C 0.14 4.17 11.16 84.48 0.94 5.12 16 18 N -0.50 -13.31 10.50 -189.53 -1.99 -15.30 16 19 C 0.06 1.32 7.37 88.47 0.65 1.98 16 20 C -0.08 -0.86 10.46 71.24 0.75 -0.12 16 21 S 0.24 6.18 23.04 -56.49 -1.30 4.88 16 22 H 0.04 1.81 7.79 -2.39 -0.02 1.79 16 23 H 0.03 1.44 6.06 -2.39 -0.01 1.43 16 24 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 25 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.09 4.96 5.95 -2.39 -0.01 4.94 16 27 H 0.27 14.50 8.31 -92.71 -0.77 13.72 16 28 H 0.19 5.47 8.06 -2.91 -0.02 5.44 16 29 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -67.78 283.69 4.30 -63.48 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.14 Total: 6.83 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 4.47 Total: -8.68 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -1.75 Total: -67.13 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -0.29 Total: -44.00 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 6.18 SS G_CDS: -1.30 Total: 4.88 kcal Total: -67.78 4.30 -63.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187955064.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.926 kcal (2) G-P(sol) polarization free energy of solvation -67.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds