Wall clock time and date at job start Mon Mar 30 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86808 * 119.99929 * 2 1 4 4 H 1.48500 * 109.47142 * 85.01471 * 3 2 1 5 5 H 1.48500 * 109.46906 * 205.01703 * 3 2 1 6 6 H 1.48499 * 109.46723 * 325.01345 * 3 2 1 7 7 C 1.40184 * 120.00386 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00740 * 188.79237 * 7 2 1 9 9 C 1.39924 * 119.99846 * 8.79262 * 7 2 1 10 10 N 1.38320 * 125.69202 * 11.51450 * 9 7 2 11 11 H 0.96995 * 125.60228 * 359.94883 * 10 9 7 12 12 C 1.38039 * 108.79182 * 179.97438 * 10 9 7 13 13 C 1.38936 * 132.79457 * 180.02562 * 12 10 9 14 14 C 1.37962 * 119.89476 * 180.02562 * 13 12 10 15 15 C 1.38946 * 120.69567 * 359.97438 * 14 13 12 16 16 C 1.36431 * 120.59326 * 359.97438 * 15 14 13 17 17 C 1.40479 * 119.80411 * 0.02709 * 16 15 14 18 18 C 1.39130 * 125.69932 * 191.21135 * 9 7 2 19 19 C 1.50699 * 126.24750 * 0.02562 * 18 9 7 20 20 F 1.39893 * 109.47639 * 30.01987 * 19 18 9 21 21 F 1.39894 * 109.46923 * 150.02470 * 19 18 9 22 22 F 1.39898 * 109.46599 * 270.01929 * 19 18 9 23 23 H 0.97006 * 120.00049 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.05679 * 359.96241 * 13 12 10 25 25 H 1.07996 * 119.65299 * 179.97438 * 14 13 12 26 26 H 1.07994 * 119.69952 * 180.02562 * 15 14 13 27 27 H 1.08000 * 120.09779 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3836 2.1073 1.3948 5 1 3.5877 1.4121 -0.5921 6 1 1.4955 2.6199 -0.8028 7 6 2.0084 -1.2140 0.0005 8 1 3.0789 -1.2195 0.1435 9 6 1.3212 -2.4187 -0.1842 10 7 0.0068 -2.5430 -0.5967 11 1 -0.5914 -1.8085 -0.8052 12 6 -0.3138 -3.8840 -0.6623 13 6 -1.4756 -4.5608 -1.0122 14 6 -1.5033 -5.9398 -0.9834 15 6 -0.3788 -6.6641 -0.6077 16 6 0.7751 -6.0244 -0.2603 17 6 0.8289 -4.6208 -0.2815 18 6 1.8476 -3.6918 0.0107 19 6 3.2499 -4.0176 0.4559 20 9 3.7310 -2.9886 1.2725 21 9 3.2442 -5.2184 1.1736 22 9 4.0765 -4.1484 -0.6652 23 1 -0.4850 0.8401 -0.0004 24 1 -2.3560 -4.0082 -1.3054 25 1 -2.4087 -6.4618 -1.2558 26 1 -0.4182 -7.7432 -0.5912 27 1 1.6444 -6.5954 0.0309 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216303396.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:21 Heat of formation + Delta-G solvation = -138.349952 kcal Electronic energy + Delta-G solvation = -18797.946918 eV Core-core repulsion = 15297.256065 eV Total energy + Delta-G solvation = -3500.690853 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.70967 -48.26559 -48.19832 -41.63505 -37.71910 -35.38780 -33.04900 -30.75081 -30.13853 -27.86942 -25.75371 -23.11893 -22.48499 -21.29144 -19.75244 -19.11449 -19.02494 -18.23587 -17.24365 -16.89434 -16.19230 -15.67009 -15.27275 -15.13464 -14.88468 -14.79731 -14.64869 -14.58346 -14.44376 -14.31102 -14.01963 -13.25329 -13.17764 -12.95268 -12.53702 -12.30006 -12.20589 -11.93050 -11.50590 -11.29334 -10.51970 -9.12138 -9.06396 -8.56441 -6.69865 0.47875 1.01271 1.25425 1.36792 1.52469 1.86225 2.10559 2.18027 2.77316 3.01381 3.22224 3.61184 3.71132 4.01561 4.14848 4.38987 4.56182 4.76998 4.90953 4.97130 5.06866 5.18026 5.42026 5.61671 5.78094 5.85330 5.97778 6.18204 6.38620 6.53092 6.73740 7.33962 7.96726 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.020698 B = 0.009819 C = 0.006976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.464207 B = 2850.968711 C = 4012.605344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.042 3.958 3 Si 1.003 2.997 4 H -0.259 1.259 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.463 4.463 8 H 0.105 0.895 9 C 0.318 3.682 10 N -0.595 5.595 11 H 0.424 0.576 12 C 0.032 3.968 13 C -0.127 4.127 14 C -0.148 4.148 15 C -0.130 4.130 16 C -0.147 4.147 17 C -0.040 4.040 18 C -0.485 4.485 19 C 0.557 3.443 20 F -0.189 7.189 21 F -0.193 7.193 22 F -0.201 7.201 23 H 0.308 0.692 24 H 0.127 0.873 25 H 0.149 0.851 26 H 0.142 0.858 27 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.095 -1.668 -1.198 2.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.176 4.176 3 Si 0.822 3.178 4 H -0.183 1.183 5 H -0.181 1.181 6 H -0.180 1.180 7 C -0.495 4.495 8 H 0.122 0.878 9 C 0.205 3.795 10 N -0.209 5.209 11 H 0.269 0.731 12 C -0.072 4.072 13 C -0.148 4.148 14 C -0.166 4.166 15 C -0.150 4.150 16 C -0.166 4.166 17 C -0.044 4.044 18 C -0.491 4.491 19 C 0.503 3.497 20 F -0.171 7.171 21 F -0.174 7.174 22 F -0.183 7.183 23 H 0.120 0.880 24 H 0.144 0.856 25 H 0.167 0.833 26 H 0.160 0.840 27 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.379 -1.470 -1.220 2.356 hybrid contribution 0.370 0.929 0.139 1.009 sum -1.008 -0.542 -1.081 1.575 Atomic orbital electron populations 1.69095 1.09041 1.32838 1.34336 1.27060 0.95763 1.05336 0.89408 0.84838 0.78996 0.74119 0.79894 1.18312 1.18052 1.18049 1.19574 0.97116 0.89343 1.43458 0.87755 1.17808 0.82166 0.92707 0.86809 1.42619 1.12337 1.05394 1.60510 0.73095 1.18821 0.96667 0.84413 1.07261 1.20243 0.94851 0.95026 1.04726 1.20926 0.99416 0.92145 1.04147 1.20744 0.92548 1.00320 1.01343 1.20469 0.99443 0.91468 1.05206 1.17902 0.92637 0.93476 1.00423 1.19051 0.94772 0.94389 1.40875 1.17232 0.85921 0.72673 0.73832 1.93068 1.90061 1.59915 1.74029 1.93040 1.97104 1.48059 1.79231 1.93100 1.75793 1.95753 1.53642 0.88003 0.85554 0.83326 0.83980 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -36.74 10.89 21.87 0.24 -36.50 15 2 C 0.04 1.87 5.48 85.33 0.47 2.34 15 3 Si 1.00 33.92 29.57 68.60 2.03 35.95 15 4 H -0.26 -8.53 7.11 99.48 0.71 -7.83 15 5 H -0.26 -8.76 7.11 99.48 0.71 -8.06 15 6 H -0.26 -8.00 7.11 99.48 0.71 -7.29 15 7 C -0.46 -23.21 8.53 23.15 0.20 -23.01 15 8 H 0.10 5.18 6.40 -2.91 -0.02 5.16 15 9 C 0.32 16.69 6.57 38.74 0.25 16.95 15 10 N -0.60 -29.31 5.78 -180.15 -1.04 -30.35 15 11 H 0.42 19.99 6.61 -92.71 -0.61 19.37 15 12 C 0.03 1.51 7.24 39.06 0.28 1.79 15 13 C -0.13 -4.91 10.07 22.37 0.23 -4.68 15 14 C -0.15 -4.92 10.02 22.37 0.22 -4.70 15 15 C -0.13 -4.54 9.97 22.02 0.22 -4.32 15 16 C -0.15 -6.20 9.66 22.39 0.22 -5.99 15 17 C -0.04 -1.95 5.98 -21.35 -0.13 -2.08 15 18 C -0.49 -25.06 5.71 -18.99 -0.11 -25.17 15 19 C 0.56 26.66 3.45 71.24 0.25 26.90 15 20 F -0.19 -8.97 15.05 44.97 0.68 -8.29 15 21 F -0.19 -8.67 15.82 44.97 0.71 -7.96 15 22 F -0.20 -9.35 17.30 44.97 0.78 -8.57 15 23 H 0.31 12.01 8.29 -92.70 -0.77 11.24 15 24 H 0.13 4.19 8.06 -2.91 -0.02 4.17 15 25 H 0.15 3.72 8.06 -2.91 -0.02 3.69 15 26 H 0.14 3.84 8.06 -2.91 -0.02 3.81 15 27 H 0.11 4.45 7.15 -2.91 -0.02 4.43 15 Total: -1.00 -55.10 251.05 6.12 -48.98 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 0.63 Total: 28.72 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 2.10 Total: -21.97 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -0.80 Total: -66.85 kcal Atomic # 9 Polarization: -26.99 SS G_CDS: 2.17 Total: -24.82 kcal Atomic # 14 Polarization: 33.92 SS G_CDS: 2.03 Total: 35.95 kcal Total: -55.10 6.12 -48.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216303396.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.371 kcal (2) G-P(sol) polarization free energy of solvation -55.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds