Wall clock time and date at job start Mon Mar 30 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86804 * 119.99977 * 2 1 4 4 H 1.48504 * 109.47033 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47085 * 299.99831 * 3 2 1 6 6 H 1.48494 * 109.47179 * 60.00291 * 3 2 1 7 7 C 1.39871 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00595 * 197.82110 * 7 2 1 9 9 C 1.41323 * 119.99624 * 17.81943 * 7 2 1 10 10 C 1.41151 * 120.08055 * 204.49022 * 9 7 2 11 11 C 1.35998 * 120.57491 * 179.74332 * 10 9 7 12 12 C 1.39706 * 120.38862 * 0.25889 * 11 10 9 13 13 N 1.37362 * 133.12791 * 179.97438 * 12 11 10 14 14 H 0.96998 * 124.98995 * 359.97438 * 13 12 11 15 15 C 1.36877 * 110.01611 * 180.02562 * 13 12 11 16 16 C 1.50710 * 124.99651 * 179.97438 * 15 13 12 17 17 F 1.39898 * 109.46889 * 0.02572 * 16 15 13 18 18 F 1.39894 * 109.46817 * 120.02482 * 16 15 13 19 19 F 1.39895 * 109.46978 * 240.02376 * 16 15 13 20 20 C 1.34174 * 110.00456 * 0.02562 * 15 13 12 21 21 C 1.41052 * 119.79563 * 0.02562 * 12 11 10 22 22 C 1.39024 * 120.10467 * 0.02562 * 21 12 11 23 23 H 0.97003 * 119.99880 * 359.97438 * 1 2 3 24 24 H 1.07994 * 119.71084 * 0.02785 * 10 9 7 25 25 H 1.08002 * 119.80610 * 180.23471 * 11 10 9 26 26 H 1.07997 * 126.55214 * 179.97438 * 20 15 13 27 27 H 1.08006 * 120.34741 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.7029 1.3464 -0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8842 2.3964 1.2125 7 6 2.0083 -1.2113 0.0005 8 1 3.0493 -1.2337 0.2868 9 6 1.3525 -2.4060 -0.3735 10 6 1.8295 -3.6503 0.0917 11 6 1.2031 -4.8058 -0.2578 12 6 0.0798 -4.7776 -1.0879 13 7 -0.7376 -5.7579 -1.5955 14 1 -0.6358 -6.7081 -1.4294 15 6 -1.7161 -5.1970 -2.3710 16 6 -2.7940 -5.9649 -3.0920 17 9 -2.6373 -7.3327 -2.8440 18 9 -4.0486 -5.5486 -2.6341 19 9 -2.6966 -5.7259 -4.4669 20 6 -1.5737 -3.8630 -2.3959 21 6 -0.4070 -3.5434 -1.5668 22 6 0.2293 -2.3587 -1.2142 23 1 -0.4850 0.8401 0.0004 24 1 2.6967 -3.6848 0.7343 25 1 1.5765 -5.7508 0.1083 26 1 -2.1988 -3.1593 -2.9254 27 1 -0.1403 -1.4114 -1.5783 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216303536.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:08 Heat of formation + Delta-G solvation = -104.413862 kcal Electronic energy + Delta-G solvation = -18012.993939 eV Core-core repulsion = 14513.774665 eV Total energy + Delta-G solvation = -3499.219274 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.02425 -47.58844 -47.48475 -40.22756 -36.20166 -33.29087 -30.98526 -29.53727 -28.52327 -25.82046 -24.54765 -21.42191 -20.47151 -20.08376 -18.36756 -18.25884 -17.98464 -17.09967 -16.17255 -15.13624 -14.45404 -14.43782 -14.09938 -13.97036 -13.70453 -13.67754 -13.54873 -13.45712 -13.20750 -12.78099 -12.14471 -11.85958 -11.57868 -11.28360 -11.10392 -10.75170 -10.26571 -9.87339 -9.58502 -9.11176 -8.79930 -7.35065 -6.85364 -6.72856 -4.27615 1.93579 2.69192 2.76852 3.10015 3.14343 3.18571 3.35705 3.51833 3.95916 4.06516 4.49084 4.58114 4.61039 5.59232 5.78906 5.89717 6.08306 6.33833 6.47084 6.85231 6.97189 7.12684 7.18295 7.42793 7.64601 7.81508 7.95648 8.13640 8.25967 8.57649 8.87846 8.89651 10.23188 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.037819 B = 0.005367 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.187538 B = 5215.782725 C = 5716.683147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.463 4.463 8 H 0.078 0.922 9 C 0.085 3.915 10 C -0.146 4.146 11 C -0.123 4.123 12 C 0.025 3.975 13 N -0.582 5.582 14 H 0.405 0.595 15 C -0.051 4.051 16 C 0.538 3.462 17 F -0.186 7.186 18 F -0.172 7.172 19 F -0.173 7.173 20 C -0.133 4.133 21 C -0.079 4.079 22 C -0.140 4.140 23 H 0.279 0.721 24 H 0.104 0.896 25 H 0.094 0.906 26 H 0.142 0.858 27 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 -7.118 -3.812 8.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.096 0.904 9 C 0.082 3.918 10 C -0.166 4.166 11 C -0.144 4.144 12 C -0.079 4.079 13 N -0.187 5.187 14 H 0.241 0.759 15 C -0.159 4.159 16 C 0.483 3.517 17 F -0.168 7.168 18 F -0.154 7.154 19 F -0.154 7.154 20 C -0.162 4.162 21 C -0.082 4.082 22 C -0.161 4.161 23 H 0.090 0.910 24 H 0.123 0.877 25 H 0.113 0.887 26 H 0.159 0.841 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.352 -7.099 -3.786 8.716 hybrid contribution 0.079 0.123 0.023 0.148 sum -3.273 -6.976 -3.763 8.575 Atomic orbital electron populations 1.69848 1.07456 1.28980 1.35855 1.25833 0.94695 1.01133 0.92514 0.86315 0.80948 0.81264 0.78494 1.18509 1.19777 1.20137 1.19456 0.98004 0.91120 1.40748 0.90436 1.17423 0.92185 0.91857 0.90314 1.20786 1.01240 0.92310 1.02299 1.19302 0.95758 0.97790 1.01562 1.17981 0.97266 0.87172 1.05446 1.40867 1.25439 1.07947 1.44486 0.75912 1.19435 0.96494 0.93548 1.06443 1.17585 0.80950 0.76169 0.77024 1.93140 1.95643 1.33872 1.94135 1.93219 1.43395 1.89993 1.88773 1.93215 1.96199 1.94135 1.31891 1.21468 0.99643 0.91754 1.03352 1.18999 0.95815 0.93377 1.00058 1.20717 0.99289 0.94990 1.01114 0.90991 0.87745 0.88745 0.84061 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.27 10.97 55.54 0.61 -19.66 15 2 C 0.08 1.85 5.13 -17.34 -0.09 1.76 15 3 Si 0.91 18.32 29.59 -169.99 -5.03 13.29 15 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 15 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 6 H -0.28 -5.52 7.11 56.52 0.40 -5.12 15 7 C -0.46 -11.84 9.04 -37.80 -0.34 -12.19 15 8 H 0.08 1.89 7.91 -52.49 -0.41 1.48 15 9 C 0.08 2.17 5.57 -106.81 -0.60 1.57 15 10 C -0.15 -3.33 9.69 -39.28 -0.38 -3.71 15 11 C -0.12 -2.58 9.99 -39.84 -0.40 -2.98 15 12 C 0.03 0.54 7.28 -83.77 -0.61 -0.07 15 13 N -0.58 -10.59 5.93 -6.79 -0.04 -10.63 15 14 H 0.41 6.06 8.62 -40.82 -0.35 5.71 15 15 C -0.05 -0.92 6.37 -81.77 -0.52 -1.45 15 16 C 0.54 8.29 3.45 36.01 0.12 8.42 15 17 F -0.19 -2.67 16.87 2.25 0.04 -2.63 15 18 F -0.17 -2.66 17.30 2.25 0.04 -2.62 15 19 F -0.17 -2.62 17.30 2.25 0.04 -2.59 15 20 C -0.13 -2.67 10.96 -37.62 -0.41 -3.09 15 21 C -0.08 -1.85 6.36 -105.14 -0.67 -2.52 15 22 C -0.14 -3.57 8.75 -38.49 -0.34 -3.91 15 23 H 0.28 6.49 8.30 -40.82 -0.34 6.15 15 24 H 0.10 2.16 8.06 -52.49 -0.42 1.74 15 25 H 0.09 1.66 8.06 -52.49 -0.42 1.24 15 26 H 0.14 2.55 8.06 -52.49 -0.42 2.13 15 27 H 0.12 3.30 6.18 -52.48 -0.32 2.97 15 LS Contribution 257.04 15.07 3.87 3.87 Total: -1.00 -26.51 257.04 -6.19 -32.70 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -1.49 Total: 6.41 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -4.23 Total: -18.15 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 0.57 Total: -30.29 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 0.12 Total: -7.84 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -26.51 -6.19 -32.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216303536.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.712 kcal (2) G-P(sol) polarization free energy of solvation -26.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds