Wall clock time and date at job start Mon Mar 30 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86804 * 119.99977 * 2 1 4 4 H 1.48504 * 109.47033 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47085 * 299.99831 * 3 2 1 6 6 H 1.48494 * 109.47179 * 60.00291 * 3 2 1 7 7 C 1.39871 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00595 * 197.82110 * 7 2 1 9 9 C 1.41323 * 119.99624 * 17.81943 * 7 2 1 10 10 C 1.41151 * 120.08055 * 204.49022 * 9 7 2 11 11 C 1.35998 * 120.57491 * 179.74332 * 10 9 7 12 12 C 1.39706 * 120.38862 * 0.25889 * 11 10 9 13 13 N 1.37362 * 133.12791 * 179.97438 * 12 11 10 14 14 H 0.96998 * 124.98995 * 359.97438 * 13 12 11 15 15 C 1.36877 * 110.01611 * 180.02562 * 13 12 11 16 16 C 1.50710 * 124.99651 * 179.97438 * 15 13 12 17 17 F 1.39898 * 109.46889 * 0.02572 * 16 15 13 18 18 F 1.39894 * 109.46817 * 120.02482 * 16 15 13 19 19 F 1.39895 * 109.46978 * 240.02376 * 16 15 13 20 20 C 1.34174 * 110.00456 * 0.02562 * 15 13 12 21 21 C 1.41052 * 119.79563 * 0.02562 * 12 11 10 22 22 C 1.39024 * 120.10467 * 0.02562 * 21 12 11 23 23 H 0.97003 * 119.99880 * 359.97438 * 1 2 3 24 24 H 1.07994 * 119.71084 * 0.02785 * 10 9 7 25 25 H 1.08002 * 119.80610 * 180.23471 * 11 10 9 26 26 H 1.07997 * 126.55214 * 179.97438 * 20 15 13 27 27 H 1.08006 * 120.34741 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.7029 1.3464 -0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8842 2.3964 1.2125 7 6 2.0083 -1.2113 0.0005 8 1 3.0493 -1.2337 0.2868 9 6 1.3525 -2.4060 -0.3735 10 6 1.8295 -3.6503 0.0917 11 6 1.2031 -4.8058 -0.2578 12 6 0.0798 -4.7776 -1.0879 13 7 -0.7376 -5.7579 -1.5955 14 1 -0.6358 -6.7081 -1.4294 15 6 -1.7161 -5.1970 -2.3710 16 6 -2.7940 -5.9649 -3.0920 17 9 -2.6373 -7.3327 -2.8440 18 9 -4.0486 -5.5486 -2.6341 19 9 -2.6966 -5.7259 -4.4669 20 6 -1.5737 -3.8630 -2.3959 21 6 -0.4070 -3.5434 -1.5668 22 6 0.2293 -2.3587 -1.2142 23 1 -0.4850 0.8401 0.0004 24 1 2.6967 -3.6848 0.7343 25 1 1.5765 -5.7508 0.1083 26 1 -2.1988 -3.1593 -2.9254 27 1 -0.1403 -1.4114 -1.5783 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216303536.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:08 Heat of formation + Delta-G solvation = -117.969173 kcal Electronic energy + Delta-G solvation = -18013.581741 eV Core-core repulsion = 14513.774665 eV Total energy + Delta-G solvation = -3499.807076 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.27168 -48.80864 -48.73794 -41.86101 -37.94334 -35.08923 -32.64177 -31.21886 -30.20082 -27.46134 -26.20334 -23.08775 -22.13001 -21.65270 -19.61478 -19.60293 -19.50414 -18.83755 -17.79312 -16.90151 -15.84373 -15.70582 -15.56038 -15.19585 -15.15046 -15.11969 -14.95349 -14.90426 -14.78376 -14.47221 -13.78235 -13.59163 -13.09884 -13.04276 -12.74780 -12.40924 -12.00758 -11.63789 -11.34543 -10.90636 -10.48198 -9.10643 -8.56596 -8.54602 -6.17966 0.30469 1.03175 1.31651 1.43072 1.53740 1.57530 1.67581 2.12132 2.26493 2.69405 2.78000 3.17172 3.30330 3.74088 4.17389 4.32256 4.45661 4.76503 4.79908 5.08344 5.28441 5.35495 5.43969 5.64206 5.88770 6.06912 6.12652 6.31976 6.70962 6.75043 7.00419 7.06170 8.43410 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.037819 B = 0.005367 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.187538 B = 5215.782725 C = 5716.683147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.977 3.023 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.497 4.497 8 H 0.079 0.921 9 C 0.056 3.944 10 C -0.161 4.161 11 C -0.112 4.112 12 C 0.020 3.980 13 N -0.566 5.566 14 H 0.424 0.576 15 C -0.032 4.032 16 C 0.553 3.447 17 F -0.174 7.174 18 F -0.169 7.169 19 F -0.168 7.168 20 C -0.158 4.158 21 C -0.105 4.105 22 C -0.171 4.171 23 H 0.284 0.716 24 H 0.121 0.879 25 H 0.135 0.865 26 H 0.154 0.846 27 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.179 -8.599 -4.008 10.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.799 3.201 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.528 4.528 8 H 0.097 0.903 9 C 0.053 3.947 10 C -0.181 4.181 11 C -0.132 4.132 12 C -0.085 4.085 13 N -0.173 5.173 14 H 0.264 0.736 15 C -0.141 4.141 16 C 0.497 3.503 17 F -0.155 7.155 18 F -0.150 7.150 19 F -0.149 7.149 20 C -0.187 4.187 21 C -0.108 4.108 22 C -0.192 4.192 23 H 0.095 0.905 24 H 0.139 0.861 25 H 0.153 0.847 26 H 0.172 0.828 27 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.391 -8.627 -3.981 10.088 hybrid contribution 0.015 0.404 0.049 0.407 sum -3.376 -8.222 -3.932 9.720 Atomic orbital electron populations 1.69927 1.08944 1.30061 1.36855 1.26661 0.95389 1.04320 0.91643 0.85229 0.79577 0.76707 0.78600 1.18002 1.19407 1.19394 1.19741 0.98325 0.92297 1.42389 0.90301 1.17782 0.92760 0.93247 0.90871 1.21008 1.02114 0.92059 1.02887 1.19655 0.94717 0.98825 1.00043 1.18126 0.97663 0.87386 1.05304 1.40818 1.24462 1.08553 1.43430 0.73624 1.19730 0.96259 0.93257 1.04894 1.17099 0.80068 0.76283 0.76803 1.93176 1.95555 1.32723 1.94066 1.93237 1.42922 1.90055 1.88786 1.93236 1.96134 1.94161 1.31349 1.21630 0.99643 0.93172 1.04275 1.19301 0.97028 0.93587 1.00913 1.20591 1.00668 0.95021 1.02917 0.90528 0.86115 0.84698 0.82840 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.05 10.97 21.82 0.24 -43.82 15 2 C 0.03 1.69 5.13 85.23 0.44 2.13 15 3 Si 0.98 38.32 29.59 68.60 2.03 40.35 15 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 15 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 15 6 H -0.27 -10.15 7.11 99.48 0.71 -9.44 15 7 C -0.50 -26.31 9.04 23.42 0.21 -26.09 15 8 H 0.08 3.97 7.91 -2.91 -0.02 3.94 15 9 C 0.06 2.95 5.57 -21.28 -0.12 2.83 15 10 C -0.16 -7.29 9.69 22.46 0.22 -7.08 15 11 C -0.11 -4.48 9.99 22.10 0.22 -4.26 15 12 C 0.02 0.85 7.28 39.32 0.29 1.13 15 13 N -0.57 -19.02 5.93 -175.41 -1.04 -20.06 15 14 H 0.42 11.06 8.62 -92.71 -0.80 10.26 15 15 C -0.03 -1.08 6.37 40.85 0.26 -0.82 15 16 C 0.55 15.38 3.45 71.24 0.25 15.62 15 17 F -0.17 -4.32 16.87 44.97 0.76 -3.57 15 18 F -0.17 -4.74 17.30 44.97 0.78 -3.96 15 19 F -0.17 -4.61 17.30 44.97 0.78 -3.83 15 20 C -0.16 -6.29 10.96 23.54 0.26 -6.04 15 21 C -0.10 -4.94 6.36 -20.20 -0.13 -5.07 15 22 C -0.17 -9.08 8.75 22.98 0.20 -8.88 15 23 H 0.28 13.70 8.30 -92.71 -0.77 12.93 15 24 H 0.12 4.92 8.06 -2.91 -0.02 4.90 15 25 H 0.14 4.23 8.06 -2.91 -0.02 4.21 15 26 H 0.15 5.53 8.06 -2.91 -0.02 5.51 15 27 H 0.10 5.67 6.18 -2.91 -0.02 5.65 15 Total: -1.00 -58.11 257.04 6.08 -52.04 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.44 Total: 19.36 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 2.09 Total: -36.51 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -0.80 Total: -63.88 kcal Atomic # 9 Polarization: -13.67 SS G_CDS: 2.31 Total: -11.35 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -58.11 6.08 -52.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216303536.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.933 kcal (2) G-P(sol) polarization free energy of solvation -58.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds