Wall clock time and date at job start Mon Mar 30 2020 06:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38240 * 120.04148 * 2 1 4 4 Cl 1.73599 * 119.98010 * 359.97438 * 3 2 1 5 5 C 1.38387 * 120.04414 * 179.71997 * 3 2 1 6 6 C 1.38290 * 120.13697 * 0.25475 * 5 3 2 7 7 C 1.38084 * 120.08920 * 359.97438 * 6 5 3 8 8 C 1.38867 * 120.04229 * 180.24836 * 2 1 3 9 9 N 1.39668 * 120.07012 * 0.02562 * 8 2 1 10 10 C 1.46501 * 119.99954 * 180.29341 * 9 8 2 11 11 C 1.53003 * 109.47282 * 180.02562 * 10 9 8 12 12 H 1.09007 * 109.46654 * 59.99905 * 11 10 9 13 13 O 1.42900 * 109.46942 * 300.00578 * 11 10 9 14 14 C 1.50691 * 109.47389 * 180.02562 * 11 10 9 15 15 H 1.08001 * 120.00247 * 0.02562 * 14 11 10 16 16 C 1.37882 * 120.00326 * 180.02562 * 14 11 10 17 17 N 1.31518 * 119.99373 * 359.97438 * 16 14 11 18 18 Si 1.86794 * 120.00408 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.47056 * 59.99788 * 18 16 14 20 20 H 1.48500 * 109.47192 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47082 * 299.99928 * 18 16 14 22 22 H 1.09001 * 109.47144 * 90.00318 * 1 2 3 23 23 H 1.08996 * 109.47465 * 210.00072 * 1 2 3 24 24 H 1.09002 * 109.47063 * 330.00096 * 1 2 3 25 25 H 1.08003 * 119.93315 * 180.27310 * 5 3 2 26 26 H 1.08004 * 119.95039 * 180.02562 * 6 5 3 27 27 H 1.07996 * 120.02855 * 180.02562 * 7 6 5 28 28 H 0.96998 * 120.00399 * 0.30173 * 9 8 2 29 29 H 1.09000 * 109.47128 * 300.00454 * 10 9 8 30 30 H 1.09004 * 109.46859 * 60.00394 * 10 9 8 31 31 H 0.96692 * 113.99781 * 299.99342 * 13 11 10 32 32 H 0.97000 * 119.99362 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1967 0.0000 4 17 1.3316 2.7004 -0.0007 5 6 3.5829 1.1968 0.0059 6 6 4.2773 0.0008 0.0064 7 6 3.5917 -1.1978 0.0016 8 6 2.2022 -1.2021 -0.0052 9 7 1.5062 -2.4130 -0.0110 10 6 2.2412 -3.6803 -0.0100 11 6 1.2493 -4.8452 -0.0178 12 1 0.6272 -4.7866 -0.9110 13 8 0.4215 -4.7736 1.1448 14 6 2.0053 -6.1488 -0.0161 15 1 3.0853 -6.1467 -0.0097 16 6 1.3183 -7.3442 -0.0228 17 7 0.0031 -7.3467 -0.0301 18 14 2.2554 -8.9601 -0.0200 19 1 3.1016 -9.0395 1.1977 20 1 1.2926 -10.0907 -0.0276 21 1 3.1169 -9.0348 -1.2273 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 4.1218 2.1328 0.0103 26 1 5.3573 0.0044 0.0114 27 1 4.1349 -2.1311 0.0025 28 1 0.5363 -2.4150 -0.0158 29 1 2.8723 -3.7350 -0.8970 30 1 2.8636 -3.7386 0.8830 31 1 0.9093 -4.8199 1.9784 32 1 -0.4802 -8.1877 -0.0344 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221871568.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:58 Heat of formation + Delta-G solvation = -61.566534 kcal Electronic energy + Delta-G solvation = -16284.393639 eV Core-core repulsion = 13462.289350 eV Total energy + Delta-G solvation = -2822.104289 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.67387 -38.33921 -37.38851 -35.67806 -34.27405 -33.58154 -31.09156 -29.34690 -27.73035 -26.46806 -23.57185 -22.27836 -21.95045 -19.16444 -18.39348 -17.33097 -16.69265 -16.31665 -16.23960 -16.00078 -15.48591 -15.14261 -14.78422 -14.40694 -14.16221 -13.75013 -13.39988 -13.28861 -13.11570 -12.89357 -12.77503 -12.38040 -12.33527 -12.22019 -12.06749 -11.66017 -11.11846 -10.88434 -10.72843 -10.27002 -9.54444 -8.29461 -8.17325 -6.43153 0.30639 0.62230 1.19882 1.42951 1.43727 1.51930 2.35209 2.64443 2.81946 3.10564 3.92131 4.05426 4.14859 4.19798 4.29966 4.50987 4.52869 4.63259 4.72220 4.73899 4.76946 4.95935 5.22765 5.34801 5.40352 5.56895 5.57230 5.66814 5.81881 5.98906 6.39243 6.67850 6.82978 7.29735 7.47450 8.87472 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.045575 B = 0.004301 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.229166 B = 6508.849490 C = 7027.561838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.176 4.176 3 C 0.003 3.997 4 Cl -0.070 7.070 5 C -0.179 4.179 6 C -0.059 4.059 7 C -0.208 4.208 8 C 0.218 3.782 9 N -0.733 5.733 10 C 0.117 3.883 11 C 0.223 3.777 12 H 0.027 0.973 13 O -0.577 6.577 14 C -0.587 4.587 15 H 0.066 0.934 16 C 0.028 3.972 17 N -0.899 5.899 18 Si 0.961 3.039 19 H -0.266 1.266 20 H -0.287 1.287 21 H -0.268 1.268 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.147 0.853 26 H 0.157 0.843 27 H 0.127 0.873 28 H 0.400 0.600 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.358 0.642 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.376 15.579 0.529 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.182 4.182 3 C -0.024 4.024 4 Cl -0.041 7.041 5 C -0.200 4.200 6 C -0.078 4.078 7 C -0.232 4.232 8 C 0.111 3.889 9 N -0.361 5.361 10 C -0.008 4.008 11 C 0.165 3.835 12 H 0.045 0.955 13 O -0.381 6.381 14 C -0.625 4.625 15 H 0.084 0.916 16 C -0.175 4.175 17 N -0.535 5.535 18 Si 0.786 3.214 19 H -0.191 1.191 20 H -0.213 1.213 21 H -0.192 1.192 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.097 0.903 25 H 0.165 0.835 26 H 0.174 0.826 27 H 0.145 0.855 28 H 0.236 0.764 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.203 0.797 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.760 15.453 0.063 16.492 hybrid contribution 0.095 -1.055 0.273 1.094 sum 5.855 14.399 0.336 15.547 Atomic orbital electron populations 1.20634 0.90198 1.02963 1.02541 1.19272 0.96934 0.90421 1.11540 1.20619 0.92659 0.85726 1.03418 1.98329 1.77290 1.31644 1.96824 1.20983 0.91310 0.99803 1.07873 1.21099 1.00937 0.90326 0.95439 1.20966 0.91910 0.99935 1.10340 1.17831 0.91954 0.85506 0.93573 1.44964 1.08656 1.02401 1.80116 1.21974 0.95400 0.82956 1.00438 1.19390 0.88070 0.90704 0.85290 0.95481 1.86497 1.39134 1.96384 1.16111 1.21890 0.93807 0.92121 1.54713 0.91584 1.25880 0.95465 1.02955 0.93195 1.70200 1.07768 1.27525 1.48042 0.85584 0.78318 0.78314 0.79204 1.19098 1.21262 1.19246 0.91092 0.92252 0.90284 0.83545 0.82578 0.85508 0.76391 0.92416 0.92393 0.79690 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.79 9.16 71.24 0.65 -2.13 16 2 C -0.18 -5.06 5.90 -19.71 -0.12 -5.17 16 3 C 0.00 0.08 6.31 22.31 0.14 0.22 16 4 Cl -0.07 -1.58 27.29 -2.72 -0.07 -1.65 16 5 C -0.18 -4.06 9.83 22.32 0.22 -3.85 16 6 C -0.06 -1.34 10.04 22.25 0.22 -1.12 16 7 C -0.21 -5.83 9.31 22.40 0.21 -5.62 16 8 C 0.22 6.79 6.63 38.21 0.25 7.04 16 9 N -0.73 -25.35 5.52 -339.41 -1.87 -27.23 16 10 C 0.12 4.45 4.51 86.38 0.39 4.84 16 11 C 0.22 10.72 2.91 29.85 0.09 10.80 16 12 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 13 O -0.58 -28.17 12.47 -148.98 -1.86 -30.03 16 14 C -0.59 -30.51 8.76 25.60 0.22 -30.28 16 15 H 0.07 3.26 7.74 -2.91 -0.02 3.23 16 16 C 0.03 1.50 5.40 84.66 0.46 1.96 16 17 N -0.90 -52.04 12.84 21.45 0.28 -51.77 16 18 Si 0.96 41.68 29.54 68.60 2.03 43.71 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 20 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 22 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.06 1.62 6.57 -2.39 -0.02 1.61 16 24 H 0.08 1.87 6.90 -2.39 -0.02 1.85 16 25 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 26 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 27 H 0.13 3.48 6.73 -2.91 -0.02 3.46 16 28 H 0.40 14.21 6.35 -92.71 -0.59 13.62 16 29 H 0.06 2.17 7.95 -2.39 -0.02 2.15 16 30 H 0.06 2.13 7.95 -2.39 -0.02 2.11 16 31 H 0.36 15.56 9.04 -74.06 -0.67 14.89 16 32 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -59.08 287.70 1.13 -57.95 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: -0.11 Total: 32.33 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 2.74 Total: -23.30 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -1.60 Total: -79.00 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -1.86 Total: -30.03 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.07 Total: -1.65 kcal Total: -59.08 1.13 -57.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221871568.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.615 kcal (2) G-P(sol) polarization free energy of solvation -59.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds