Wall clock time and date at job start Mon Mar 30 2020 06:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50688 * 1 3 3 C 1.38293 * 119.93290 * 2 1 4 4 C 1.38088 * 120.08428 * 180.02562 * 3 2 1 5 5 C 1.38940 * 119.95924 * 359.97438 * 4 3 2 6 6 N 1.39669 * 120.07438 * 179.97438 * 5 4 3 7 7 C 1.46497 * 120.00399 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47195 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47153 * 304.99547 * 8 7 6 10 10 O 1.42898 * 109.47319 * 64.99855 * 8 7 6 11 11 C 1.50699 * 109.47078 * 184.99754 * 8 7 6 12 12 H 1.07999 * 120.00019 * 359.97438 * 11 8 7 13 13 C 1.37877 * 120.00129 * 180.02562 * 11 8 7 14 14 N 1.31519 * 119.99723 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99900 * 179.97438 * 13 11 8 16 16 H 1.48491 * 109.47312 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46948 * 119.99892 * 15 13 11 18 18 H 1.48500 * 109.46809 * 239.99811 * 15 13 11 19 19 C 1.38874 * 119.85721 * 0.25013 * 5 4 3 20 20 C 1.38238 * 119.91237 * 359.51609 * 19 5 4 21 21 Cl 1.73598 * 119.97380 * 180.20920 * 20 19 5 22 22 H 1.08995 * 109.47656 * 89.99661 * 1 2 3 23 23 H 1.09001 * 109.47480 * 209.99994 * 1 2 3 24 24 H 1.09004 * 109.47261 * 329.99865 * 1 2 3 25 25 H 1.07997 * 119.95339 * 359.97438 * 3 2 1 26 26 H 1.08004 * 120.01875 * 179.97438 * 4 3 2 27 27 H 0.96999 * 119.99559 * 359.97438 * 6 5 4 28 28 H 1.09001 * 109.47117 * 59.99107 * 7 6 5 29 29 H 1.09004 * 109.46581 * 299.99760 * 7 6 5 30 30 H 0.96698 * 113.99898 * 59.99520 * 10 8 7 31 31 H 0.97003 * 119.99231 * 179.97438 * 14 13 11 32 32 H 1.07999 * 120.03879 * 179.72528 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5778 1.2021 -0.0005 5 6 4.2748 0.0002 -0.0005 6 7 5.6715 0.0011 -0.0016 7 6 6.4049 -1.2671 -0.0022 8 6 7.9089 -0.9865 -0.0040 9 1 8.1570 -0.3407 -0.8463 10 8 8.2742 -0.3391 1.2164 11 6 8.6622 -2.2858 -0.1283 12 1 8.1222 -3.2184 -0.1986 13 6 10.0408 -2.2840 -0.1514 14 7 10.6983 -1.1483 -0.0653 15 14 10.9744 -3.8947 -0.3048 16 1 10.0095 -5.0205 -0.3842 17 1 11.8077 -3.8686 -1.5337 18 1 11.8483 -4.0751 0.8822 19 6 3.5798 -1.2021 -0.0053 20 6 2.1974 -1.1992 0.0002 21 17 1.3270 -2.7012 -0.0002 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 1.6551 2.1327 -0.0004 26 1 4.1157 2.1387 -0.0010 27 1 6.1559 0.8415 -0.0027 28 1 6.1412 -1.8389 -0.8919 29 1 6.1426 -1.8388 0.8881 30 1 8.0816 -0.8576 2.0096 31 1 11.6682 -1.1471 -0.0811 32 1 4.1186 -2.1380 -0.0098 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221872034.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:03 Heat of formation + Delta-G solvation = -64.474740 kcal Electronic energy + Delta-G solvation = -16083.781114 eV Core-core repulsion = 13261.550716 eV Total energy + Delta-G solvation = -2822.230398 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.56411 -38.41071 -37.41162 -36.00046 -34.29399 -32.53558 -31.65523 -30.08480 -27.35574 -25.75223 -24.03184 -22.48230 -21.90722 -19.20631 -18.40070 -17.10452 -16.70726 -16.30255 -16.22830 -16.00159 -15.31304 -15.01787 -14.88989 -14.65044 -14.24215 -13.94372 -13.20449 -13.16580 -13.05090 -12.85180 -12.83723 -12.59538 -12.43372 -12.07723 -12.01332 -11.70937 -11.13842 -10.77087 -10.67227 -10.27938 -9.72978 -8.25963 -8.19308 -6.44800 0.30906 0.59047 1.20007 1.39311 1.41596 1.53143 2.33548 2.62384 2.80398 3.08490 3.91781 4.10154 4.16494 4.24587 4.27436 4.42902 4.48669 4.65944 4.82477 4.85971 4.91323 4.94746 5.20872 5.27433 5.40754 5.55454 5.60933 5.65666 5.85581 5.97375 6.36394 6.66398 6.85128 7.28132 7.45961 8.85860 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.033157 B = 0.004476 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.265717 B = 6254.349559 C = 6987.208641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.153 4.153 3 C -0.055 4.055 4 C -0.197 4.197 5 C 0.214 3.786 6 N -0.734 5.734 7 C 0.117 3.883 8 C 0.224 3.776 9 H 0.031 0.969 10 O -0.576 6.576 11 C -0.587 4.587 12 H 0.062 0.938 13 C 0.029 3.971 14 N -0.897 5.897 15 Si 0.961 3.039 16 H -0.263 1.263 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.211 4.211 20 C 0.004 3.996 21 Cl -0.074 7.074 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.160 0.840 26 H 0.139 0.861 27 H 0.403 0.597 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.358 0.642 31 H 0.263 0.737 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.414 2.520 0.489 18.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.156 4.156 3 C -0.074 4.074 4 C -0.220 4.220 5 C 0.108 3.892 6 N -0.361 5.361 7 C -0.008 4.008 8 C 0.167 3.833 9 H 0.049 0.951 10 O -0.380 6.380 11 C -0.626 4.626 12 H 0.081 0.919 13 C -0.174 4.174 14 N -0.534 5.534 15 Si 0.785 3.215 16 H -0.187 1.187 17 H -0.205 1.205 18 H -0.204 1.204 19 C -0.235 4.235 20 C -0.024 4.024 21 Cl -0.045 7.045 22 H 0.092 0.908 23 H 0.082 0.918 24 H 0.103 0.897 25 H 0.178 0.822 26 H 0.157 0.843 27 H 0.239 0.761 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.203 0.797 31 H 0.072 0.928 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.023 2.741 0.067 18.231 hybrid contribution 1.039 -1.198 0.178 1.596 sum -16.984 1.544 0.246 17.056 Atomic orbital electron populations 1.20733 0.88903 1.03570 1.02896 1.19803 0.97768 0.90853 1.07137 1.21021 0.92717 0.97871 0.95774 1.20951 0.95116 0.96315 1.09627 1.17983 0.83926 0.93903 0.93356 1.44846 1.02138 1.08729 1.80393 1.21945 0.93356 0.85482 0.99997 1.19381 0.87528 0.92202 0.84233 0.95083 1.86495 1.87600 1.47797 1.16143 1.21941 0.92423 0.94042 1.54148 0.91934 1.25860 0.98824 0.99520 0.93200 1.70206 1.07837 1.27417 1.47960 0.85489 0.78519 0.79711 0.77747 1.18737 1.20485 1.20449 1.20483 0.92796 0.97576 1.12665 1.20608 0.91295 0.86993 1.03462 1.98328 1.76442 1.32869 1.96833 0.90758 0.91760 0.89749 0.82207 0.84320 0.76146 0.92938 0.92902 0.79680 0.92845 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 9.61 71.23 0.68 -1.08 16 2 C -0.15 -3.53 5.89 -19.82 -0.12 -3.64 16 3 C -0.06 -1.18 9.69 22.25 0.22 -0.96 16 4 C -0.20 -5.02 9.90 22.40 0.22 -4.80 16 5 C 0.21 6.66 6.65 38.21 0.25 6.92 16 6 N -0.73 -25.35 5.68 -339.43 -1.93 -27.28 16 7 C 0.12 4.62 4.49 86.38 0.39 5.01 16 8 C 0.22 10.92 2.86 29.85 0.09 11.00 16 9 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 10 O -0.58 -28.34 12.68 -148.98 -1.89 -30.23 16 11 C -0.59 -31.15 8.76 25.60 0.22 -30.93 16 12 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 13 C 0.03 1.57 5.40 84.65 0.46 2.03 16 14 N -0.90 -52.16 12.84 21.45 0.28 -51.89 16 15 Si 0.96 42.34 29.54 68.60 2.03 44.37 16 16 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 19 C -0.21 -6.61 9.09 22.42 0.20 -6.40 16 20 C 0.00 0.10 6.31 22.30 0.14 0.24 16 21 Cl -0.07 -1.84 27.28 -2.72 -0.07 -1.92 16 22 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.06 1.13 6.89 -2.39 -0.02 1.11 16 24 H 0.08 1.08 8.08 -2.38 -0.02 1.06 16 25 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 26 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 27 H 0.40 13.78 8.49 -92.71 -0.79 12.99 16 28 H 0.05 2.10 7.94 -2.39 -0.02 2.08 16 29 H 0.05 2.05 7.96 -2.39 -0.02 2.04 16 30 H 0.36 15.72 9.04 -74.06 -0.67 15.05 16 31 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.12 3.91 6.73 -2.91 -0.02 3.89 16 Total: -1.00 -60.50 291.56 0.86 -59.63 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: -0.31 Total: 29.93 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 2.76 Total: -22.62 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -1.65 Total: -79.17 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -1.89 Total: -30.23 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.07 Total: -1.92 kcal Total: -60.50 0.86 -59.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221872034.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.840 kcal (2) G-P(sol) polarization free energy of solvation -60.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds