Wall clock time and date at job start Mon Mar 30 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.21442 * 119.99863 * 270.00245 * 12 2 1 14 14 C 1.41237 * 120.00172 * 89.99784 * 12 2 1 15 15 C 1.37184 * 125.48023 * 179.72065 * 14 12 2 16 16 C 1.37204 * 113.24172 * 179.80321 * 15 14 12 17 17 C 1.34017 * 115.14489 * 0.49311 * 16 15 14 18 18 N 1.48029 * 124.49994 * 179.74940 * 17 16 15 19 19 O 1.21805 * 119.99612 * 0.02562 * 18 17 16 20 20 O 1.21792 * 120.00328 * 179.97438 * 18 17 16 21 21 S 1.70611 * 111.00113 * 359.72617 * 17 16 15 22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 26 26 H 1.08000 * 123.37678 * 359.97438 * 15 14 12 27 27 H 1.07993 * 122.42520 * 180.22347 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 6 2.0323 -0.7103 -1.2306 13 8 2.2347 -1.9074 -1.2006 14 6 2.2677 0.0161 -2.4187 15 6 2.7280 -0.5131 -3.5976 16 6 2.8620 0.4202 -4.5943 17 6 2.5354 1.6732 -4.2488 18 7 2.6074 2.8394 -5.1577 19 8 2.9837 2.6934 -6.3069 20 8 2.2894 3.9446 -4.7568 21 16 2.0251 1.7457 -2.6224 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8912 -0.5369 4.4374 26 1 2.9589 -1.5600 -3.7289 27 1 3.2099 0.1644 -5.5842 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235087646.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:10 Heat of formation + Delta-G solvation = -17.517552 kcal Electronic energy + Delta-G solvation = -16087.135008 eV Core-core repulsion = 13133.151438 eV Total energy + Delta-G solvation = -2953.983570 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.040 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.31901 -41.09624 -38.93083 -37.78831 -35.96392 -33.60775 -32.24113 -28.85251 -27.26783 -25.77762 -24.60180 -22.00159 -21.67181 -20.18328 -19.40431 -18.86164 -18.64376 -17.92081 -17.12069 -16.84742 -16.02525 -15.54494 -15.06007 -14.87479 -14.31099 -14.16202 -13.98909 -13.60687 -12.94968 -12.90070 -12.74370 -12.63795 -12.45803 -12.40799 -12.17470 -11.57309 -11.36174 -10.88413 -10.70465 -10.66488 -10.13658 -8.34868 -6.44310 -1.85478 -0.67876 -0.36149 0.13628 0.44759 0.79926 1.31233 1.36002 1.47161 1.62280 2.28558 2.92812 3.00889 3.43883 3.80251 4.03208 4.26981 4.28695 4.47491 4.56834 4.69117 4.73517 4.94054 4.95950 5.29078 5.43637 6.14261 6.28263 6.43424 6.64783 7.20585 8.81920 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.033404 B = 0.006250 C = 0.005522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.032264 B = 4478.641496 C = 5069.213600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.039 4.039 3 H 0.066 0.934 4 C -0.525 4.525 5 H 0.034 0.966 6 C 0.015 3.985 7 N -0.945 5.945 8 Si 0.944 3.056 9 H -0.260 1.260 10 H -0.297 1.297 11 H -0.227 1.227 12 C 0.432 3.568 13 O -0.461 6.461 14 C -0.256 4.256 15 C -0.059 4.059 16 C -0.040 4.040 17 C -0.220 4.220 18 N 0.061 4.939 19 O -0.135 6.135 20 O -0.180 6.180 21 S 0.392 5.608 22 H 0.079 0.921 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.269 0.731 26 H 0.190 0.810 27 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.037 7.039 -16.364 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.058 4.058 3 H 0.083 0.917 4 C -0.562 4.562 5 H 0.052 0.948 6 C -0.183 4.183 7 N -0.584 5.584 8 Si 0.768 3.232 9 H -0.186 1.186 10 H -0.224 1.224 11 H -0.150 1.150 12 C 0.309 3.691 13 O -0.338 6.338 14 C -0.377 4.377 15 C -0.091 4.091 16 C -0.077 4.077 17 C -0.423 4.423 18 N 0.580 4.420 19 O -0.357 6.357 20 O -0.389 6.389 21 S 0.664 5.336 22 H 0.098 0.902 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.207 0.793 27 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.496 7.139 -14.719 16.549 hybrid contribution 0.370 -0.665 -0.423 0.871 sum -2.125 6.474 -15.143 16.605 Atomic orbital electron populations 1.22054 0.94131 1.02345 1.01691 1.19738 0.95843 0.97599 0.92633 0.91661 1.20939 1.32346 1.12903 0.90061 0.94812 1.25934 0.97062 1.00345 0.94924 1.70042 1.47074 1.42409 0.98850 0.85924 0.79170 0.79531 0.78549 1.18572 1.22411 1.14991 1.20544 0.73033 0.88186 0.87310 1.90518 1.40163 1.17767 1.85325 1.25064 1.11335 1.00023 1.01265 1.21164 0.96312 1.03022 0.88648 1.20393 0.95521 0.87996 1.03801 1.26126 1.23533 0.92020 1.00584 1.42646 0.97597 1.01073 1.00686 1.94540 1.47629 1.91588 1.01980 1.94605 1.52965 1.10663 1.80704 1.83789 1.54104 1.00374 0.95306 0.90228 0.92727 0.92988 0.92156 0.79291 0.78163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 8.65 71.98 0.62 -4.65 15 2 C -0.04 -1.62 1.87 -12.29 -0.02 -1.64 15 3 H 0.07 2.49 6.33 -2.38 -0.02 2.47 15 4 C -0.52 -29.00 8.91 25.60 0.23 -28.78 15 5 H 0.03 2.17 7.38 -2.91 -0.02 2.15 15 6 C 0.02 0.85 5.45 84.65 0.46 1.32 15 7 N -0.94 -57.69 13.96 21.45 0.30 -57.39 15 8 Si 0.94 40.54 24.37 68.60 1.67 42.21 15 9 H -0.26 -10.53 6.86 99.48 0.68 -9.85 15 10 H -0.30 -12.93 7.11 99.48 0.71 -12.22 15 11 H -0.23 -8.30 6.54 99.48 0.65 -7.65 15 12 C 0.43 16.36 5.98 26.42 0.16 16.52 15 13 O -0.46 -20.57 16.33 -3.53 -0.06 -20.62 15 14 C -0.26 -7.07 6.23 22.76 0.14 -6.93 15 15 C -0.06 -1.25 9.95 21.78 0.22 -1.03 15 16 C -0.04 -0.71 9.74 21.06 0.21 -0.51 15 17 C -0.22 -4.87 7.29 80.96 0.59 -4.28 15 18 N 0.06 1.52 4.45 -50.79 -0.23 1.29 15 19 O -0.14 -3.34 18.89 18.88 0.36 -2.98 15 20 O -0.18 -4.91 18.99 18.90 0.36 -4.55 15 21 S 0.39 9.20 21.55 -56.49 -1.22 7.98 15 22 H 0.08 2.17 8.14 -2.38 -0.02 2.15 15 23 H 0.05 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.05 1.93 3.25 -2.38 -0.01 1.93 15 25 H 0.27 15.29 8.31 -92.71 -0.77 14.52 15 26 H 0.19 3.44 8.02 -2.91 -0.02 3.42 15 27 H 0.20 2.35 7.97 -2.91 -0.02 2.33 15 Total: -1.00 -67.68 260.67 4.93 -62.75 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: 1.14 Total: 1.29 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 2.60 Total: -29.98 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.07 Total: -56.09 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: 0.66 Total: -28.16 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 1.67 Total: 42.21 kcal Atomic # 16 Polarization: 9.20 SS G_CDS: -1.22 Total: 7.98 kcal Total: -67.68 4.93 -62.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235087646.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.234 kcal (2) G-P(sol) polarization free energy of solvation -67.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds