Wall clock time and date at job start Mon Mar 30 2020 06:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35926 * 116.99786 * 2 1 4 4 C 1.38744 * 120.04268 * 269.99812 * 3 2 1 5 5 C 1.50697 * 120.02167 * 0.02562 * 4 3 2 6 6 C 1.38121 * 119.95670 * 180.02562 * 4 3 2 7 7 C 1.38395 * 120.04157 * 359.97438 * 6 4 3 8 8 Cl 1.73597 * 119.95411 * 179.97438 * 7 6 4 9 9 C 1.38342 * 120.08549 * 359.97438 * 7 6 4 10 10 C 1.38167 * 120.04341 * 0.02562 * 9 7 6 11 11 C 1.50702 * 120.02154 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.46860 * 220.00141 * 11 10 9 13 13 N 1.46903 * 109.46740 * 339.99820 * 11 10 9 14 14 C 1.50694 * 109.47177 * 99.99459 * 11 10 9 15 15 H 1.08006 * 120.00319 * 0.02562 * 14 11 10 16 16 C 1.37880 * 119.99920 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00184 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 119.99983 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.46868 * 60.00116 * 18 16 14 20 20 H 1.48499 * 109.46973 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47160 * 300.00254 * 18 16 14 22 22 H 1.09000 * 109.46603 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46741 * 300.00117 * 1 2 3 24 24 H 1.08996 * 109.46743 * 59.99885 * 1 2 3 25 25 H 1.09001 * 109.47052 * 270.00014 * 5 4 3 26 26 H 1.08996 * 109.47026 * 29.99299 * 5 4 3 27 27 H 1.08994 * 109.47006 * 149.99958 * 5 4 3 28 28 H 1.07993 * 119.98095 * 180.25235 * 6 4 3 29 29 H 1.07999 * 119.97560 * 179.97438 * 9 7 6 30 30 H 1.00902 * 110.99567 * 296.04262 * 13 11 10 31 31 H 1.00896 * 111.00350 * 60.00329 * 13 11 10 32 32 H 0.97002 * 120.00203 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 2.3615 1.8300 -1.2010 5 6 2.0196 1.1602 -2.5070 6 6 2.9890 3.0605 -1.1990 7 6 3.3026 3.6762 0.0001 8 17 4.0919 5.2224 0.0001 9 6 2.9880 3.0612 1.1987 10 6 2.3603 1.8303 1.2007 11 6 2.0184 1.1605 2.5067 12 1 2.2146 0.0912 2.4288 13 7 2.8415 1.7325 3.5806 14 6 0.5609 1.3825 2.8185 15 1 -0.0563 1.9514 2.1389 16 6 0.0149 0.8585 3.9711 17 7 0.7662 0.1653 4.7985 18 14 -1.7920 1.1331 4.3574 19 1 -2.6237 0.5550 3.2714 20 1 -2.1289 0.4731 5.6443 21 1 -2.0596 2.5899 4.4638 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 2.8527 0.5318 -2.8220 26 1 1.1292 0.5450 -2.3776 27 1 1.8297 1.9192 -3.2658 28 1 3.2309 3.5444 -2.1336 29 1 3.2340 3.5431 2.1334 30 1 3.8202 1.5403 3.4273 31 1 2.6777 2.7238 3.6728 32 1 0.3822 -0.2030 5.6096 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238360605.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:52 Heat of formation + Delta-G solvation = -20.873173 kcal Electronic energy + Delta-G solvation = -17138.181117 eV Core-core repulsion = 14317.841424 eV Total energy + Delta-G solvation = -2820.339692 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.80754 -37.03619 -35.93469 -34.93331 -32.21203 -31.00528 -29.25499 -27.00540 -26.57118 -25.29402 -22.99847 -21.29779 -19.68627 -17.23027 -16.52148 -16.14534 -15.65473 -14.93274 -14.62678 -14.08872 -13.57892 -13.48848 -13.15793 -13.06235 -12.60412 -12.52328 -12.22764 -11.88159 -11.56350 -11.28830 -10.96177 -10.95067 -10.73043 -10.59209 -10.53319 -9.79509 -9.42421 -9.18491 -8.50179 -8.20668 -7.86832 -7.16643 -5.94044 -4.09236 1.46687 1.71598 2.41353 3.28221 3.34723 3.36336 3.80958 4.40266 4.55901 5.06959 5.18114 5.29244 5.41438 5.68901 5.76340 5.80602 5.82590 5.97167 6.07046 6.11252 6.25790 6.39298 6.55489 6.59763 6.64400 6.94296 7.07193 7.44996 7.79279 8.09959 8.15522 8.55677 8.92992 9.06100 9.57465 11.09976 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.020576 B = 0.008012 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.477846 B = 3493.881284 C = 4271.390957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.328 6.328 3 C 0.103 3.897 4 C -0.101 4.101 5 C -0.104 4.104 6 C -0.127 4.127 7 C -0.034 4.034 8 Cl -0.089 7.089 9 C -0.118 4.118 10 C -0.075 4.075 11 C 0.259 3.741 12 H 0.061 0.939 13 N -0.811 5.811 14 C -0.529 4.529 15 H 0.052 0.948 16 C 0.087 3.913 17 N -0.840 5.840 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.028 0.972 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.300 0.700 31 H 0.318 0.682 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 3.948 -11.063 12.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.244 6.244 3 C 0.059 3.941 4 C -0.101 4.101 5 C -0.161 4.161 6 C -0.146 4.146 7 C -0.060 4.060 8 Cl -0.060 7.060 9 C -0.137 4.137 10 C -0.079 4.079 11 C 0.149 3.851 12 H 0.078 0.922 13 N -0.337 5.337 14 C -0.567 4.567 15 H 0.070 0.930 16 C -0.121 4.121 17 N -0.474 5.474 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.203 1.203 22 H 0.101 0.899 23 H 0.103 0.897 24 H 0.046 0.954 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.503 3.289 -10.359 11.153 hybrid contribution -0.638 1.173 -0.520 1.433 sum 1.865 4.462 -10.879 11.906 Atomic orbital electron populations 1.23224 0.78788 1.02810 1.01897 1.85899 1.20132 1.24170 1.94248 1.18427 0.97769 0.86932 0.90983 1.20085 1.00336 0.94249 0.95477 1.20638 1.02182 1.00032 0.93229 1.20522 1.02255 0.95348 0.96427 1.20830 1.01942 0.88012 0.95245 1.98325 1.79344 1.29316 1.99003 1.20809 1.00797 0.95503 0.96574 1.22194 0.92965 0.93061 0.99640 1.18171 0.93459 0.94445 0.79043 0.92186 1.59156 1.07276 1.17467 1.49794 1.20621 0.92196 1.36718 1.07179 0.92969 1.24916 0.96770 0.94437 0.95957 1.70080 1.34550 1.32128 1.10663 0.86881 0.86045 0.78502 0.77757 1.20288 1.21208 1.20297 0.89890 0.89652 0.95378 0.91210 0.91263 0.92000 0.85631 0.85169 0.88908 0.86894 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.65 101.05 1.08 1.55 16 2 O -0.33 -6.54 8.86 -19.51 -0.17 -6.71 16 3 C 0.10 2.03 5.66 -39.22 -0.22 1.81 16 4 C -0.10 -1.67 5.89 -104.48 -0.62 -2.29 16 5 C -0.10 -1.37 9.79 36.00 0.35 -1.02 16 6 C -0.13 -1.99 9.48 -39.57 -0.38 -2.36 16 7 C -0.03 -0.57 6.32 -39.49 -0.25 -0.82 16 8 Cl -0.09 -1.29 28.95 -51.86 -1.50 -2.79 16 9 C -0.12 -2.20 9.03 -39.57 -0.36 -2.55 16 10 C -0.08 -1.57 5.03 -104.48 -0.53 -2.09 16 11 C 0.26 6.20 2.51 -70.02 -0.18 6.03 16 12 H 0.06 1.64 7.85 -51.93 -0.41 1.23 16 13 N -0.81 -18.51 8.02 -6.65 -0.05 -18.56 16 14 C -0.53 -13.61 6.71 -34.44 -0.23 -13.85 16 15 H 0.05 1.35 6.87 -52.48 -0.36 0.99 16 16 C 0.09 2.31 5.39 -17.82 -0.10 2.22 16 17 N -0.84 -23.64 12.77 55.43 0.71 -22.93 16 18 Si 0.88 20.43 29.54 -169.99 -5.02 15.41 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 23 H 0.09 1.75 5.01 -51.93 -0.26 1.49 16 24 H 0.03 0.43 7.26 -51.93 -0.38 0.05 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.92 6.32 -51.93 -0.33 0.59 16 27 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 28 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.13 2.35 6.25 -52.49 -0.33 2.02 16 30 H 0.30 6.19 9.06 -39.29 -0.36 5.84 16 31 H 0.32 6.91 7.28 -39.29 -0.29 6.63 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 282.55 15.07 4.26 4.26 Total: -1.00 -27.90 282.55 -6.73 -34.63 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -3.53 Total: 10.08 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -1.42 Total: -13.38 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.65 Total: -41.49 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.17 Total: -6.71 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.50 Total: -2.79 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.90 -6.73 -34.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238360605.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.759 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds