Wall clock time and date at job start Mon Mar 30 2020 06:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35926 * 116.99786 * 2 1 4 4 C 1.38744 * 120.04268 * 269.99812 * 3 2 1 5 5 C 1.50697 * 120.02167 * 0.02562 * 4 3 2 6 6 C 1.38121 * 119.95670 * 180.02562 * 4 3 2 7 7 C 1.38395 * 120.04157 * 359.97438 * 6 4 3 8 8 Cl 1.73597 * 119.95411 * 179.97438 * 7 6 4 9 9 C 1.38342 * 120.08549 * 359.97438 * 7 6 4 10 10 C 1.38167 * 120.04341 * 0.02562 * 9 7 6 11 11 C 1.50702 * 120.02154 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.46860 * 220.00141 * 11 10 9 13 13 N 1.46903 * 109.46740 * 339.99820 * 11 10 9 14 14 C 1.50694 * 109.47177 * 99.99459 * 11 10 9 15 15 H 1.08006 * 120.00319 * 0.02562 * 14 11 10 16 16 C 1.37880 * 119.99920 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00184 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 119.99983 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.46868 * 60.00116 * 18 16 14 20 20 H 1.48499 * 109.46973 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47160 * 300.00254 * 18 16 14 22 22 H 1.09000 * 109.46603 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46741 * 300.00117 * 1 2 3 24 24 H 1.08996 * 109.46743 * 59.99885 * 1 2 3 25 25 H 1.09001 * 109.47052 * 270.00014 * 5 4 3 26 26 H 1.08996 * 109.47026 * 29.99299 * 5 4 3 27 27 H 1.08994 * 109.47006 * 149.99958 * 5 4 3 28 28 H 1.07993 * 119.98095 * 180.25235 * 6 4 3 29 29 H 1.07999 * 119.97560 * 179.97438 * 9 7 6 30 30 H 1.00902 * 110.99567 * 296.04262 * 13 11 10 31 31 H 1.00896 * 111.00350 * 60.00329 * 13 11 10 32 32 H 0.97002 * 120.00203 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 2.3615 1.8300 -1.2010 5 6 2.0196 1.1602 -2.5070 6 6 2.9890 3.0605 -1.1990 7 6 3.3026 3.6762 0.0001 8 17 4.0919 5.2224 0.0001 9 6 2.9880 3.0612 1.1987 10 6 2.3603 1.8303 1.2007 11 6 2.0184 1.1605 2.5067 12 1 2.2146 0.0912 2.4288 13 7 2.8415 1.7325 3.5806 14 6 0.5609 1.3825 2.8185 15 1 -0.0563 1.9514 2.1389 16 6 0.0149 0.8585 3.9711 17 7 0.7662 0.1653 4.7985 18 14 -1.7920 1.1331 4.3574 19 1 -2.6237 0.5550 3.2714 20 1 -2.1289 0.4731 5.6443 21 1 -2.0596 2.5899 4.4638 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 2.8527 0.5318 -2.8220 26 1 1.1292 0.5450 -2.3776 27 1 1.8297 1.9192 -3.2658 28 1 3.2309 3.5444 -2.1336 29 1 3.2340 3.5431 2.1334 30 1 3.8202 1.5403 3.4273 31 1 2.6777 2.7238 3.6728 32 1 0.3822 -0.2030 5.6096 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238360605.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:51 Heat of formation + Delta-G solvation = -38.546681 kcal Electronic energy + Delta-G solvation = -17138.947498 eV Core-core repulsion = 14317.841424 eV Total energy + Delta-G solvation = -2821.106073 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.23165 -38.41806 -37.30116 -36.57937 -33.98741 -32.53205 -30.75676 -28.51360 -28.14746 -26.81032 -24.69320 -22.69589 -21.26457 -18.74522 -18.41627 -17.57522 -17.06346 -16.58834 -16.29669 -15.89713 -15.02780 -14.80560 -14.63927 -14.47298 -14.21305 -13.70718 -13.66876 -13.24268 -13.02379 -12.94025 -12.65911 -12.52971 -12.33420 -12.10481 -11.84318 -11.50915 -11.24811 -10.72538 -10.52588 -9.62173 -9.30294 -8.95983 -7.96698 -6.16564 0.08418 0.33119 1.12481 1.43023 1.45009 1.51146 2.38432 2.50187 3.13667 3.26769 3.81835 3.88009 4.15566 4.38909 4.43209 4.44869 4.53118 4.68394 4.71730 4.81929 4.90260 5.03537 5.09196 5.21334 5.29591 5.46654 5.60938 5.69747 5.74268 6.16342 6.64299 6.69594 7.07223 7.21616 7.53020 9.06787 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.020576 B = 0.008012 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.477846 B = 3493.881284 C = 4271.390957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.344 6.344 3 C 0.082 3.918 4 C -0.096 4.096 5 C -0.103 4.103 6 C -0.115 4.115 7 C -0.036 4.036 8 Cl -0.066 7.066 9 C -0.124 4.124 10 C -0.103 4.103 11 C 0.268 3.732 12 H 0.015 0.985 13 N -0.821 5.821 14 C -0.525 4.525 15 H 0.048 0.952 16 C 0.039 3.961 17 N -0.878 5.878 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.288 1.288 21 H -0.276 1.276 22 H 0.099 0.901 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.161 0.839 29 H 0.129 0.871 30 H 0.311 0.689 31 H 0.324 0.676 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.551 5.237 -13.369 14.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.262 6.262 3 C 0.038 3.962 4 C -0.097 4.097 5 C -0.159 4.159 6 C -0.133 4.133 7 C -0.062 4.062 8 Cl -0.037 7.037 9 C -0.143 4.143 10 C -0.106 4.106 11 C 0.158 3.842 12 H 0.033 0.967 13 N -0.348 5.348 14 C -0.564 4.564 15 H 0.066 0.934 16 C -0.165 4.165 17 N -0.514 5.514 18 Si 0.765 3.235 19 H -0.192 1.192 20 H -0.214 1.214 21 H -0.201 1.201 22 H 0.118 0.882 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.178 0.822 29 H 0.147 0.853 30 H 0.123 0.877 31 H 0.137 0.863 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.302 4.589 -12.683 13.683 hybrid contribution -0.497 0.834 0.100 0.976 sum 1.805 5.422 -12.583 13.820 Atomic orbital electron populations 1.23240 0.78056 1.03839 1.01518 1.85870 1.21039 1.24885 1.94361 1.18692 0.98565 0.87159 0.91813 1.20426 0.99179 0.94340 0.95795 1.20729 1.02479 1.00799 0.91910 1.20932 1.00346 0.94695 0.97342 1.20907 1.01514 0.88886 0.94921 1.98335 1.78787 1.27609 1.98962 1.20773 1.01017 0.94941 0.97596 1.21854 0.95674 0.94473 0.98647 1.17704 0.92870 0.92417 0.81237 0.96706 1.58982 1.07962 1.17802 1.50084 1.20833 0.93320 1.35578 1.06643 0.93432 1.25610 1.00496 0.94394 0.96025 1.70218 1.36244 1.33736 1.11153 0.85935 0.81710 0.78250 0.77563 1.19152 1.21365 1.20138 0.88244 0.92863 0.92730 0.89975 0.91567 0.89087 0.82155 0.85300 0.87735 0.86278 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 10.65 113.37 1.21 2.16 16 2 O -0.34 -13.80 8.86 -92.71 -0.82 -14.62 16 3 C 0.08 3.18 5.66 22.50 0.13 3.31 16 4 C -0.10 -2.96 5.89 -19.77 -0.12 -3.08 16 5 C -0.10 -2.34 9.79 71.23 0.70 -1.64 16 6 C -0.11 -3.21 9.48 22.28 0.21 -3.00 16 7 C -0.04 -1.11 6.32 22.33 0.14 -0.97 16 8 Cl -0.07 -1.74 28.95 -2.72 -0.08 -1.82 16 9 C -0.12 -4.57 9.03 22.28 0.20 -4.37 16 10 C -0.10 -4.36 5.03 -19.77 -0.10 -4.46 16 11 C 0.27 13.33 2.51 43.42 0.11 13.44 16 12 H 0.02 0.87 7.85 -2.39 -0.02 0.85 16 13 N -0.82 -38.70 8.02 -174.96 -1.40 -40.10 16 14 C -0.53 -27.76 6.71 25.60 0.17 -27.59 16 15 H 0.05 2.51 6.87 -2.91 -0.02 2.49 16 16 C 0.04 2.10 5.39 84.66 0.46 2.56 16 17 N -0.88 -50.90 12.77 21.45 0.27 -50.62 16 18 Si 0.94 42.56 29.54 68.60 2.03 44.59 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 20 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 23 H 0.05 2.22 5.01 -2.39 -0.01 2.20 16 24 H 0.05 1.59 7.26 -2.39 -0.02 1.57 16 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 1.56 6.32 -2.39 -0.02 1.55 16 27 H 0.09 1.55 8.08 -2.39 -0.02 1.53 16 28 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 29 H 0.13 4.64 6.25 -2.91 -0.02 4.63 16 30 H 0.31 13.28 9.06 -89.69 -0.81 12.47 16 31 H 0.32 14.43 7.28 -89.70 -0.65 13.77 16 32 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -61.16 282.55 2.81 -58.35 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: -0.30 Total: 27.88 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 3.11 Total: -23.65 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -1.13 Total: -90.73 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.82 Total: -14.62 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.08 Total: -1.82 kcal Total: -61.16 2.81 -58.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238360605.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.803 kcal (2) G-P(sol) polarization free energy of solvation -61.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds