Wall clock time and date at job start Mon Mar 30 2020 06:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35919 * 117.00019 * 2 1 4 4 C 1.38745 * 120.04439 * 89.99707 * 3 2 1 5 5 C 1.50698 * 120.02165 * 359.95530 * 4 3 2 6 6 C 1.38119 * 119.95613 * 179.97438 * 4 3 2 7 7 C 1.38387 * 120.04484 * 0.02562 * 6 4 3 8 8 Cl 1.73601 * 119.95480 * 179.97438 * 7 6 4 9 9 C 1.38337 * 120.08637 * 359.96222 * 7 6 4 10 10 C 1.38174 * 120.04071 * 359.78476 * 9 7 6 11 11 C 1.50700 * 120.01974 * 180.25732 * 10 9 7 12 12 H 1.09000 * 109.46751 * 145.23415 * 11 10 9 13 13 N 1.46898 * 109.47057 * 25.23081 * 11 10 9 14 14 C 1.50704 * 109.46958 * 265.22748 * 11 10 9 15 15 H 1.08003 * 120.00343 * 0.02562 * 14 11 10 16 16 C 1.37876 * 119.99716 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00222 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99740 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47437 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47107 * 120.00893 * 18 16 14 21 21 H 1.48501 * 109.47227 * 240.00236 * 18 16 14 22 22 H 1.09000 * 109.47187 * 300.00215 * 1 2 3 23 23 H 1.09001 * 109.46558 * 60.00263 * 1 2 3 24 24 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47230 * 89.99567 * 5 4 3 26 26 H 1.08997 * 109.47773 * 210.00396 * 5 4 3 27 27 H 1.09008 * 109.47032 * 329.99942 * 5 4 3 28 28 H 1.08006 * 119.97792 * 179.97438 * 6 4 3 29 29 H 1.07994 * 119.98162 * 180.02562 * 9 7 6 30 30 H 1.00900 * 110.99924 * 299.99715 * 13 11 10 31 31 H 1.00899 * 110.99848 * 63.95597 * 13 11 10 32 32 H 0.97001 * 119.99990 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 2.3614 1.8300 1.2010 5 6 2.0191 1.1605 2.5070 6 6 2.9890 3.0604 1.1989 7 6 3.3027 3.6761 -0.0001 8 17 4.0909 5.2229 0.0000 9 6 2.9894 3.0605 -1.1986 10 6 2.3663 1.8272 -1.2007 11 6 2.0304 1.1543 -2.5066 12 1 2.1416 0.0754 -2.3985 13 7 2.9394 1.6377 -3.5545 14 6 0.6084 1.4772 -2.8868 15 1 0.0080 2.1070 -2.2470 16 6 0.0741 0.9693 -4.0520 17 7 0.8053 0.2028 -4.8314 18 14 -1.6884 1.3701 -4.5237 19 1 -2.2915 2.2456 -3.4869 20 1 -1.7033 2.0711 -5.8327 21 1 -2.4714 0.1125 -4.6268 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 2.8518 0.5318 2.8223 26 1 1.8292 1.9196 3.2658 27 1 1.1284 0.5456 2.3775 28 1 3.2342 3.5428 2.1336 29 1 3.2354 3.5423 -2.1333 30 1 2.8551 2.6361 -3.6739 31 1 3.8932 1.3767 -3.3544 32 1 0.4293 -0.1547 -5.6509 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238360789.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:53 Heat of formation + Delta-G solvation = -22.369642 kcal Electronic energy + Delta-G solvation = -17117.558542 eV Core-core repulsion = 14297.153958 eV Total energy + Delta-G solvation = -2820.404584 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.81351 -37.05212 -35.94264 -34.92153 -32.20587 -31.01171 -29.26315 -27.02316 -26.50109 -25.36588 -22.98934 -21.32118 -19.69153 -17.23862 -16.50246 -16.16469 -15.66164 -14.96035 -14.61738 -14.06843 -13.58428 -13.51083 -13.18084 -13.04631 -12.61220 -12.52377 -12.24738 -11.89276 -11.55891 -11.28447 -10.97712 -10.94388 -10.74273 -10.58162 -10.52349 -9.82277 -9.38838 -9.24787 -8.50328 -8.21147 -7.88079 -7.15896 -5.93849 -4.09126 1.46124 1.71258 2.41355 3.27015 3.36416 3.38050 3.79846 4.40519 4.53911 5.06585 5.17704 5.29511 5.41015 5.68652 5.75144 5.78364 5.82044 5.96311 6.04121 6.10816 6.26089 6.38749 6.50720 6.57433 6.63800 6.93078 7.06833 7.46739 7.81009 8.08663 8.14168 8.56298 8.93877 9.07173 9.58291 11.10186 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.020105 B = 0.008035 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.363922 B = 3484.018455 C = 4259.199403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.329 6.329 3 C 0.102 3.898 4 C -0.100 4.100 5 C -0.104 4.104 6 C -0.127 4.127 7 C -0.034 4.034 8 Cl -0.088 7.088 9 C -0.115 4.115 10 C -0.075 4.075 11 C 0.258 3.742 12 H 0.061 0.939 13 N -0.810 5.810 14 C -0.528 4.528 15 H 0.052 0.948 16 C 0.086 3.914 17 N -0.841 5.841 18 Si 0.880 3.120 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.284 1.284 22 H 0.029 0.971 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.317 0.683 31 H 0.300 0.700 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.694 3.799 11.271 12.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.245 6.245 3 C 0.057 3.943 4 C -0.101 4.101 5 C -0.161 4.161 6 C -0.145 4.145 7 C -0.060 4.060 8 Cl -0.060 7.060 9 C -0.134 4.134 10 C -0.078 4.078 11 C 0.148 3.852 12 H 0.078 0.922 13 N -0.336 5.336 14 C -0.566 4.566 15 H 0.071 0.929 16 C -0.121 4.121 17 N -0.475 5.475 18 Si 0.708 3.292 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.210 1.210 22 H 0.048 0.952 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.131 0.869 31 H 0.111 0.889 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.432 3.160 10.570 11.297 hybrid contribution -0.596 1.222 0.451 1.433 sum 1.835 4.382 11.021 12.001 Atomic orbital electron populations 1.23136 0.78809 1.02759 1.01697 1.85902 1.20093 1.24270 1.94254 1.18429 0.97880 0.86940 0.91041 1.20078 1.00336 0.94258 0.95456 1.20639 1.02169 1.00036 0.93234 1.20522 1.02239 0.95350 0.96434 1.20835 1.01938 0.88016 0.95248 1.98326 1.79380 1.29259 1.99002 1.20795 1.00702 0.95361 0.96551 1.22182 0.92976 0.93085 0.99560 1.18199 0.92653 0.95031 0.79362 0.92170 1.59171 1.07179 1.17350 1.49916 1.20713 0.95094 1.33366 1.07476 0.92949 1.24923 0.96634 0.94450 0.96118 1.70108 1.34877 1.30664 1.11807 0.86758 0.85606 0.78192 0.78686 1.19879 1.20936 1.20971 0.95196 0.90137 0.89778 0.91203 0.91990 0.91276 0.85620 0.85144 0.86945 0.88927 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.76 101.05 1.09 1.61 16 2 O -0.33 -6.48 8.77 -19.49 -0.17 -6.65 16 3 C 0.10 1.98 5.67 -39.22 -0.22 1.76 16 4 C -0.10 -1.66 5.89 -104.48 -0.62 -2.28 16 5 C -0.10 -1.36 9.79 36.00 0.35 -1.01 16 6 C -0.13 -1.98 9.48 -39.57 -0.38 -2.36 16 7 C -0.03 -0.57 6.32 -39.49 -0.25 -0.82 16 8 Cl -0.09 -1.29 28.95 -51.86 -1.50 -2.79 16 9 C -0.12 -2.15 9.05 -39.57 -0.36 -2.51 16 10 C -0.07 -1.56 4.99 -104.47 -0.52 -2.08 16 11 C 0.26 6.18 2.57 -70.02 -0.18 6.00 16 12 H 0.06 1.64 7.69 -51.93 -0.40 1.24 16 13 N -0.81 -18.56 8.14 -6.65 -0.05 -18.62 16 14 C -0.53 -13.67 6.92 -34.44 -0.24 -13.91 16 15 H 0.05 1.37 7.32 -52.48 -0.38 0.99 16 16 C 0.09 2.31 5.39 -17.82 -0.10 2.21 16 17 N -0.84 -23.69 12.77 55.43 0.71 -22.99 16 18 Si 0.88 20.52 29.54 -169.99 -5.02 15.50 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H 0.03 0.45 7.26 -51.93 -0.38 0.07 16 23 H 0.08 1.62 5.71 -51.93 -0.30 1.32 16 24 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 27 H 0.07 0.91 6.32 -51.92 -0.33 0.58 16 28 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 29 H 0.13 2.37 6.29 -52.49 -0.33 2.04 16 30 H 0.32 6.91 7.20 -39.29 -0.28 6.63 16 31 H 0.30 6.23 9.06 -39.29 -0.36 5.87 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 283.91 15.07 4.28 4.28 Total: -1.00 -28.16 283.91 -6.75 -34.91 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -3.58 Total: 9.74 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -1.42 Total: -13.39 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.65 Total: -41.60 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.17 Total: -6.65 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.50 Total: -2.79 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.16 -6.75 -34.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238360789.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.545 kcal (2) G-P(sol) polarization free energy of solvation -28.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds