Wall clock time and date at job start Mon Mar 30 2020 06:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35915 * 116.99880 * 2 1 4 4 C 1.38748 * 120.04565 * 0.25077 * 3 2 1 5 5 C 1.38120 * 119.95543 * 180.25373 * 4 3 2 6 6 C 1.50696 * 119.97747 * 179.74595 * 5 4 3 7 7 C 1.38394 * 120.04513 * 359.77552 * 5 4 3 8 8 Cl 1.73596 * 119.95709 * 179.97438 * 7 5 4 9 9 C 1.38344 * 120.08194 * 359.97438 * 7 5 4 10 10 C 1.38166 * 120.04317 * 0.02562 * 9 7 5 11 11 C 1.50700 * 120.01775 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47210 * 145.00119 * 11 10 9 13 13 N 1.46899 * 109.47483 * 24.99789 * 11 10 9 14 14 C 1.50702 * 109.46869 * 264.99826 * 11 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 H 1.09004 * 109.47209 * 299.99885 * 1 2 3 23 23 H 1.09005 * 109.47177 * 59.99736 * 1 2 3 24 24 H 1.09001 * 109.47064 * 179.97438 * 1 2 3 25 25 H 1.07993 * 120.02085 * 359.97438 * 4 3 2 26 26 H 1.08998 * 109.47434 * 270.02733 * 6 5 4 27 27 H 1.09006 * 109.47179 * 30.02573 * 6 5 4 28 28 H 1.09007 * 109.47115 * 150.02297 * 6 5 4 29 29 H 1.08001 * 119.97628 * 180.02562 * 9 7 5 30 30 H 1.00903 * 111.00048 * 300.00270 * 13 11 10 31 31 H 1.00904 * 110.99882 * 63.95460 * 13 11 10 32 32 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2913 2.3752 0.0053 5 6 1.9202 3.6049 -0.0001 6 6 1.1009 4.8697 -0.0001 7 6 3.3023 3.6763 -0.0059 8 17 4.0904 5.2231 -0.0133 9 6 4.0565 2.5166 -0.0059 10 6 3.4311 1.2846 -0.0006 11 6 4.2533 0.0217 -0.0001 12 1 3.7480 -0.7406 0.5930 13 7 5.5743 0.2976 0.5801 14 6 4.4188 -0.4705 -1.4148 15 1 3.9735 0.0767 -2.2326 16 6 5.1439 -1.6161 -1.6658 17 7 5.6865 -2.2822 -0.6700 18 14 5.3555 -2.2219 -3.4200 19 1 4.6534 -1.3012 -4.3498 20 1 6.8008 -2.2604 -3.7595 21 1 4.7812 -3.5856 -3.5455 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2128 2.3200 0.0089 26 1 0.8992 5.1719 -1.0278 27 1 0.1584 4.6922 0.5180 28 1 1.6524 5.6599 0.5094 29 1 5.1350 2.5743 -0.0101 30 1 6.0632 1.0016 0.0477 31 1 5.4945 0.5675 1.5491 32 1 6.1963 -3.0884 -0.8466 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238368324.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:48 Heat of formation + Delta-G solvation = -20.633528 kcal Electronic energy + Delta-G solvation = -16881.816846 eV Core-core repulsion = 14061.487546 eV Total energy + Delta-G solvation = -2820.329301 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.90700 -37.45512 -35.99478 -34.87303 -32.12989 -30.63359 -29.57416 -27.68029 -26.46021 -25.33297 -22.46418 -21.56556 -20.05098 -17.16171 -16.46469 -16.13061 -15.67296 -15.26731 -14.49720 -14.10986 -13.88243 -13.79588 -13.63446 -12.86460 -12.62222 -12.29236 -12.03335 -11.97011 -11.66761 -11.40825 -11.03571 -10.96483 -10.74754 -10.67263 -10.35806 -10.21047 -9.72359 -9.22651 -8.40089 -8.26563 -7.47131 -7.08918 -5.81945 -3.95404 1.67553 1.70856 2.51643 3.36101 3.44038 3.48049 3.75002 4.06809 4.54680 4.95747 5.05305 5.27425 5.35084 5.39403 5.43702 5.66051 5.70288 5.71408 5.81942 5.95534 5.97865 6.27949 6.42075 6.52196 6.70720 6.74794 7.13576 7.53695 7.86437 7.95943 8.25367 8.65890 9.02362 9.18607 9.71632 11.22567 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.020812 B = 0.007412 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.030952 B = 3776.931500 C = 4488.611339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.289 6.289 3 C 0.138 3.862 4 C -0.205 4.205 5 C -0.067 4.067 6 C -0.111 4.111 7 C -0.069 4.069 8 Cl -0.089 7.089 9 C -0.083 4.083 10 C -0.094 4.094 11 C 0.263 3.737 12 H 0.057 0.943 13 N -0.810 5.810 14 C -0.521 4.521 15 H 0.051 0.949 16 C 0.084 3.916 17 N -0.848 5.848 18 Si 0.883 3.117 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.097 0.903 25 H 0.127 0.873 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.134 0.866 30 H 0.317 0.683 31 H 0.299 0.701 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.313 10.810 2.654 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.201 6.201 3 C 0.092 3.908 4 C -0.224 4.224 5 C -0.068 4.068 6 C -0.168 4.168 7 C -0.095 4.095 8 Cl -0.060 7.060 9 C -0.102 4.102 10 C -0.098 4.098 11 C 0.153 3.847 12 H 0.075 0.925 13 N -0.337 5.337 14 C -0.559 4.559 15 H 0.070 0.930 16 C -0.123 4.123 17 N -0.483 5.483 18 Si 0.711 3.289 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.115 0.885 25 H 0.145 0.855 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.151 0.849 30 H 0.130 0.870 31 H 0.109 0.891 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.869 9.797 2.555 13.460 hybrid contribution -0.438 0.918 -0.933 1.380 sum -9.307 10.716 1.623 14.286 Atomic orbital electron populations 1.23008 0.79861 1.03583 1.00467 1.86312 1.19834 1.26093 1.87897 1.18962 0.92153 0.83929 0.95780 1.20941 0.99508 0.91316 1.10621 1.19257 0.91637 0.95137 1.00752 1.20771 0.98990 0.94698 1.02328 1.20568 0.91939 0.85847 1.11193 1.98300 1.80710 1.29691 1.97333 1.20695 1.00230 0.89554 0.99748 1.21242 0.91831 0.98732 0.97950 1.18088 0.83723 0.86236 0.96608 0.92547 1.59184 1.21464 1.50044 1.02983 1.20765 1.34957 1.09630 0.90585 0.93036 1.24915 0.94994 0.96213 0.96134 1.70115 1.32289 1.15938 1.29914 0.86712 0.77737 0.78646 0.85835 1.19965 1.21077 1.21117 0.93373 0.93166 0.88496 0.85492 0.91224 0.91791 0.91138 0.84861 0.86984 0.89055 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.29 -5.63 9.64 -19.47 -0.19 -5.82 16 3 C 0.14 2.70 6.66 -39.22 -0.26 2.44 16 4 C -0.20 -3.32 8.69 -39.44 -0.34 -3.66 16 5 C -0.07 -1.05 5.88 -104.61 -0.62 -1.66 16 6 C -0.11 -1.33 9.61 36.00 0.35 -0.99 16 7 C -0.07 -1.17 6.31 -39.49 -0.25 -1.42 16 8 Cl -0.09 -1.31 27.29 -51.86 -1.41 -2.73 16 9 C -0.08 -1.59 9.05 -39.57 -0.36 -1.94 16 10 C -0.09 -2.01 4.99 -104.48 -0.52 -2.53 16 11 C 0.26 6.56 2.57 -70.02 -0.18 6.38 16 12 H 0.06 1.58 7.70 -51.93 -0.40 1.18 16 13 N -0.81 -18.99 8.12 -6.65 -0.05 -19.05 16 14 C -0.52 -14.44 8.71 -34.44 -0.30 -14.74 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 16 C 0.08 2.36 5.39 -17.82 -0.10 2.26 16 17 N -0.85 -24.85 12.76 55.43 0.71 -24.14 16 18 Si 0.88 21.62 29.54 -169.99 -5.02 16.60 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 23 H 0.05 0.60 7.67 -51.93 -0.40 0.20 16 24 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.13 1.68 6.30 -52.49 -0.33 1.35 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 28 H 0.07 0.82 6.90 -51.93 -0.36 0.46 16 29 H 0.13 2.46 6.29 -52.49 -0.33 2.13 16 30 H 0.32 7.05 7.20 -39.29 -0.28 6.77 16 31 H 0.30 6.26 9.06 -39.29 -0.36 5.91 16 32 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 285.54 15.07 4.30 4.30 Total: -1.00 -30.54 285.54 -6.91 -37.45 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -3.66 Total: 7.89 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.59 Total: -14.51 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.65 Total: -43.18 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.19 Total: -5.82 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.41 Total: -2.73 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.54 -6.91 -37.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238368324.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.815 kcal (2) G-P(sol) polarization free energy of solvation -30.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds