Wall clock time and date at job start Mon Mar 30 2020 06:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35915 * 116.99880 * 2 1 4 4 C 1.38748 * 120.04565 * 0.25077 * 3 2 1 5 5 C 1.38120 * 119.95543 * 180.25373 * 4 3 2 6 6 C 1.50696 * 119.97747 * 179.74595 * 5 4 3 7 7 C 1.38394 * 120.04513 * 359.77552 * 5 4 3 8 8 Cl 1.73596 * 119.95709 * 179.97438 * 7 5 4 9 9 C 1.38344 * 120.08194 * 359.97438 * 7 5 4 10 10 C 1.38166 * 120.04317 * 0.02562 * 9 7 5 11 11 C 1.50700 * 120.01775 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47210 * 145.00119 * 11 10 9 13 13 N 1.46899 * 109.47483 * 24.99789 * 11 10 9 14 14 C 1.50702 * 109.46869 * 264.99826 * 11 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 H 1.09004 * 109.47209 * 299.99885 * 1 2 3 23 23 H 1.09005 * 109.47177 * 59.99736 * 1 2 3 24 24 H 1.09001 * 109.47064 * 179.97438 * 1 2 3 25 25 H 1.07993 * 120.02085 * 359.97438 * 4 3 2 26 26 H 1.08998 * 109.47434 * 270.02733 * 6 5 4 27 27 H 1.09006 * 109.47179 * 30.02573 * 6 5 4 28 28 H 1.09007 * 109.47115 * 150.02297 * 6 5 4 29 29 H 1.08001 * 119.97628 * 180.02562 * 9 7 5 30 30 H 1.00903 * 111.00048 * 300.00270 * 13 11 10 31 31 H 1.00904 * 110.99882 * 63.95460 * 13 11 10 32 32 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2913 2.3752 0.0053 5 6 1.9202 3.6049 -0.0001 6 6 1.1009 4.8697 -0.0001 7 6 3.3023 3.6763 -0.0059 8 17 4.0904 5.2231 -0.0133 9 6 4.0565 2.5166 -0.0059 10 6 3.4311 1.2846 -0.0006 11 6 4.2533 0.0217 -0.0001 12 1 3.7480 -0.7406 0.5930 13 7 5.5743 0.2976 0.5801 14 6 4.4188 -0.4705 -1.4148 15 1 3.9735 0.0767 -2.2326 16 6 5.1439 -1.6161 -1.6658 17 7 5.6865 -2.2822 -0.6700 18 14 5.3555 -2.2219 -3.4200 19 1 4.6534 -1.3012 -4.3498 20 1 6.8008 -2.2604 -3.7595 21 1 4.7812 -3.5856 -3.5455 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2128 2.3200 0.0089 26 1 0.8992 5.1719 -1.0278 27 1 0.1584 4.6922 0.5180 28 1 1.6524 5.6599 0.5094 29 1 5.1350 2.5743 -0.0101 30 1 6.0632 1.0016 0.0477 31 1 5.4945 0.5675 1.5491 32 1 6.1963 -3.0884 -0.8466 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238368324.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:48 Heat of formation + Delta-G solvation = -40.991943 kcal Electronic energy + Delta-G solvation = -16882.699653 eV Core-core repulsion = 14061.487546 eV Total energy + Delta-G solvation = -2821.212108 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.27730 -38.77661 -37.36835 -36.48948 -33.99430 -32.25063 -30.92565 -28.95214 -28.04187 -26.94853 -24.06315 -22.94683 -21.62830 -18.53701 -18.46467 -17.52594 -17.14044 -16.56510 -16.41046 -15.90106 -15.28621 -14.94090 -14.81569 -14.48939 -14.30769 -13.68654 -13.33532 -13.13961 -13.02007 -12.83840 -12.67865 -12.55537 -12.41877 -12.17213 -11.97090 -11.51871 -11.40433 -11.17178 -10.53796 -9.69601 -8.98632 -8.83259 -7.95072 -6.15519 0.30220 0.33967 1.22942 1.41044 1.42854 1.53572 2.45636 2.51924 2.71284 3.27577 3.76458 3.81326 4.11429 4.31817 4.37829 4.43191 4.45419 4.60241 4.67972 4.74548 4.80560 4.88356 4.99553 5.24913 5.27777 5.39657 5.59254 5.76229 5.77899 6.20702 6.56793 6.68747 7.10497 7.25799 7.55050 9.08319 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.020812 B = 0.007412 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.030952 B = 3776.931500 C = 4488.611339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.124 3.876 4 C -0.197 4.197 5 C -0.057 4.057 6 C -0.110 4.110 7 C -0.079 4.079 8 Cl -0.068 7.068 9 C -0.086 4.086 10 C -0.132 4.132 11 C 0.274 3.726 12 H 0.013 0.987 13 N -0.820 5.820 14 C -0.530 4.530 15 H 0.038 0.962 16 C 0.035 3.965 17 N -0.881 5.881 18 Si 0.946 3.054 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.280 1.280 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.110 0.890 25 H 0.163 0.837 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.130 0.870 30 H 0.323 0.677 31 H 0.312 0.688 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.993 12.693 2.095 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.078 3.922 4 C -0.215 4.215 5 C -0.058 4.058 6 C -0.166 4.166 7 C -0.106 4.106 8 Cl -0.039 7.039 9 C -0.105 4.105 10 C -0.136 4.136 11 C 0.164 3.836 12 H 0.031 0.969 13 N -0.348 5.348 14 C -0.569 4.569 15 H 0.057 0.943 16 C -0.168 4.168 17 N -0.517 5.517 18 Si 0.772 3.228 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.205 1.205 22 H 0.090 0.910 23 H 0.084 0.916 24 H 0.128 0.872 25 H 0.180 0.820 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.147 0.853 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.564 11.694 1.995 15.885 hybrid contribution 0.000 0.433 -0.715 0.836 sum -10.564 12.127 1.280 16.134 Atomic orbital electron populations 1.23353 0.76937 1.05230 1.02283 1.86255 1.23080 1.26801 1.88035 1.19142 0.91891 0.85143 0.96051 1.21259 1.01039 0.90133 1.09112 1.19780 0.91460 0.96631 0.97901 1.20880 0.99485 0.92607 1.03672 1.20661 0.92716 0.86153 1.11067 1.98303 1.80517 1.27835 1.97236 1.20651 1.00230 0.89784 0.99841 1.20862 0.92824 0.97811 1.02087 1.17568 0.84381 0.87284 0.94389 0.96886 1.58984 1.21358 1.50582 1.03866 1.21017 1.34402 1.09662 0.91809 0.94341 1.25639 0.94876 0.96458 0.99848 1.70237 1.33256 1.16409 1.31824 0.85731 0.77710 0.78109 0.81298 1.19744 1.20590 1.20543 0.91026 0.91618 0.87204 0.81998 0.89788 0.89249 0.90621 0.85256 0.86374 0.87706 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.52 16 2 O -0.33 -12.92 9.64 -92.59 -0.89 -13.81 16 3 C 0.12 4.83 6.66 22.50 0.15 4.98 16 4 C -0.20 -5.88 8.69 22.36 0.19 -5.68 16 5 C -0.06 -1.61 5.88 -19.86 -0.12 -1.73 16 6 C -0.11 -2.16 9.61 71.23 0.68 -1.47 16 7 C -0.08 -2.56 6.31 22.33 0.14 -2.42 16 8 Cl -0.07 -1.85 27.29 -2.72 -0.07 -1.92 16 9 C -0.09 -3.29 9.05 22.28 0.20 -3.08 16 10 C -0.13 -5.79 4.99 -19.77 -0.10 -5.88 16 11 C 0.27 14.27 2.57 43.42 0.11 14.38 16 12 H 0.01 0.79 7.70 -2.38 -0.02 0.77 16 13 N -0.82 -39.94 8.12 -174.95 -1.42 -41.36 16 14 C -0.53 -30.36 8.71 25.60 0.22 -30.14 16 15 H 0.04 2.24 7.74 -2.91 -0.02 2.22 16 16 C 0.03 2.01 5.39 84.66 0.46 2.46 16 17 N -0.88 -53.07 12.76 21.45 0.27 -52.80 16 18 Si 0.95 45.18 29.54 68.60 2.03 47.21 16 19 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 22 H 0.07 1.42 7.65 -2.39 -0.02 1.40 16 23 H 0.07 1.41 7.67 -2.38 -0.02 1.39 16 24 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.16 3.59 6.30 -2.91 -0.02 3.57 16 26 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.09 1.34 8.09 -2.38 -0.02 1.32 16 28 H 0.07 1.44 6.90 -2.38 -0.02 1.42 16 29 H 0.13 4.86 6.29 -2.91 -0.02 4.84 16 30 H 0.32 14.86 7.20 -89.69 -0.65 14.21 16 31 H 0.31 13.59 9.06 -89.69 -0.81 12.78 16 32 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -67.65 285.54 2.67 -64.98 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: -0.30 Total: 24.78 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 3.06 Total: -27.07 kcal Atomic # 7 Polarization: -93.02 SS G_CDS: -1.15 Total: -94.16 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.89 Total: -13.81 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.07 Total: -1.92 kcal Total: -67.65 2.67 -64.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238368324.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.988 kcal (2) G-P(sol) polarization free energy of solvation -67.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds