Wall clock time and date at job start Mon Mar 30 2020 06:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38162 * 120.02081 * 2 1 4 4 C 1.50699 * 119.98224 * 0.02562 * 3 2 1 5 5 C 1.38350 * 120.04164 * 179.97438 * 3 2 1 6 6 Cl 1.73597 * 119.95872 * 180.02562 * 5 3 2 7 7 C 1.38386 * 120.08342 * 359.97438 * 5 3 2 8 8 C 1.38123 * 120.04200 * 0.02562 * 7 5 3 9 9 C 1.50707 * 120.01770 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.46800 * 144.99832 * 9 8 7 11 11 N 1.46894 * 109.47101 * 24.99924 * 9 8 7 12 12 C 1.50704 * 109.47114 * 264.99648 * 9 8 7 13 13 H 1.07998 * 119.99731 * 5.43229 * 12 9 8 14 14 C 1.37878 * 120.00077 * 185.42514 * 12 9 8 15 15 N 1.31516 * 119.99755 * 9.57491 * 14 12 9 16 16 Si 1.86799 * 119.99829 * 189.56898 * 14 12 9 17 17 H 1.48498 * 109.46753 * 84.99660 * 16 14 12 18 18 H 1.48501 * 109.46984 * 204.99237 * 16 14 12 19 19 H 1.48496 * 109.47377 * 324.99656 * 16 14 12 20 20 C 1.38699 * 120.01964 * 180.24162 * 2 1 3 21 21 O 1.35922 * 120.04405 * 0.03720 * 20 2 1 22 22 H 1.08998 * 109.47145 * 89.98861 * 1 2 3 23 23 H 1.08996 * 109.46716 * 209.99921 * 1 2 3 24 24 H 1.09002 * 109.46418 * 329.99470 * 1 2 3 25 25 H 1.08995 * 109.47321 * 269.97539 * 4 3 2 26 26 H 1.09002 * 109.46816 * 29.98120 * 4 3 2 27 27 H 1.09006 * 109.46911 * 149.97234 * 4 3 2 28 28 H 1.08001 * 119.97939 * 179.97438 * 7 5 3 29 29 H 1.00899 * 110.99847 * 173.34769 * 11 9 8 30 30 H 1.00896 * 111.00169 * 297.29843 * 11 9 8 31 31 H 0.96994 * 119.99787 * 179.97438 * 15 14 12 32 32 H 0.96697 * 113.99691 * 270.25300 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 1.4449 2.5014 0.0006 5 6 3.5818 1.1968 0.0005 6 17 4.4481 2.7011 0.0012 7 6 4.2759 -0.0004 0.0016 8 6 3.5883 -1.1984 0.0016 9 6 4.3448 -2.5018 0.0022 10 1 3.7988 -3.2384 0.5916 11 7 5.6760 -2.2952 0.5879 12 6 4.4903 -2.9988 -1.4131 13 1 4.1548 -2.3870 -2.2374 14 6 5.0519 -4.2345 -1.6555 15 7 5.2871 -5.0572 -0.6568 16 14 5.4784 -4.7400 -3.4025 17 1 6.8232 -4.2179 -3.7545 18 1 5.4809 -6.2217 -3.5024 19 1 4.4701 -4.1825 -4.3393 20 6 2.2010 -1.2009 -0.0051 21 8 1.5227 -2.3788 -0.0108 22 1 -0.3633 0.0002 -1.0276 23 1 -0.3632 -0.8900 0.5138 24 1 -0.3632 0.8900 0.5139 25 1 1.2632 2.8165 -1.0269 26 1 0.4925 2.3709 0.5145 27 1 2.0340 3.2608 0.5148 28 1 5.3559 0.0019 0.0016 29 1 6.1620 -3.1723 0.6995 30 1 6.2183 -1.6491 0.0343 31 1 5.6818 -5.9266 -0.8274 32 1 1.3225 -2.7216 0.8709 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238543235.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:51 Heat of formation + Delta-G solvation = -40.299516 kcal Electronic energy + Delta-G solvation = -16915.546187 eV Core-core repulsion = 14094.364105 eV Total energy + Delta-G solvation = -2821.182082 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.72406 -36.76254 -35.63717 -35.24229 -32.62024 -30.91685 -30.30432 -27.44636 -26.10518 -25.40864 -22.27815 -21.45755 -19.35852 -17.48175 -16.54333 -16.28258 -15.67992 -14.73486 -14.54430 -13.93599 -13.77400 -13.10443 -12.99394 -12.80646 -12.56218 -12.30239 -12.07754 -12.05996 -11.54785 -11.34276 -11.14047 -10.98167 -10.83671 -10.56169 -10.44464 -10.10908 -10.00667 -9.41862 -8.62482 -8.04016 -7.81530 -7.31329 -6.12721 -4.22901 1.61310 1.80364 2.53574 3.23372 3.30336 3.34888 4.01657 4.36205 4.74902 5.10233 5.14253 5.19976 5.31249 5.49702 5.67078 5.87557 5.88386 5.98196 6.04025 6.09620 6.24327 6.44852 6.53174 6.76322 6.83647 6.98083 7.25204 7.60106 7.74797 8.04736 8.28237 8.61895 8.78394 8.94611 9.44186 10.88731 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023114 B = 0.007114 C = 0.006199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.089382 B = 3934.926159 C = 4515.442438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.110 4.110 3 C -0.094 4.094 4 C -0.112 4.112 5 C -0.042 4.042 6 Cl -0.088 7.088 7 C -0.091 4.091 8 C -0.042 4.042 9 C 0.246 3.754 10 H 0.060 0.940 11 N -0.851 5.851 12 C -0.536 4.536 13 H 0.054 0.946 14 C 0.069 3.931 15 N -0.890 5.890 16 Si 0.894 3.106 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.111 3.889 21 O -0.478 6.478 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.135 0.865 29 H 0.348 0.652 30 H 0.314 0.686 31 H 0.264 0.736 32 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.274 10.917 3.043 12.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.111 4.111 3 C -0.094 4.094 4 C -0.169 4.169 5 C -0.068 4.068 6 Cl -0.059 7.059 7 C -0.110 4.110 8 C -0.043 4.043 9 C 0.137 3.863 10 H 0.078 0.922 11 N -0.379 5.379 12 C -0.575 4.575 13 H 0.073 0.927 14 C -0.134 4.134 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.199 1.199 20 C 0.065 3.935 21 O -0.287 6.287 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.152 0.848 29 H 0.161 0.839 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -6.500 11.203 3.126 13.324 hybrid contribution 0.744 -0.813 -1.488 1.852 sum -5.756 10.390 1.638 11.990 Atomic orbital electron populations 1.20637 0.90893 1.02163 1.02240 1.19826 0.96189 0.91587 1.03496 1.19168 0.91331 0.95123 1.03826 1.20810 0.99805 0.93987 1.02251 1.20723 0.91427 0.86442 1.08220 1.98303 1.76966 1.33483 1.97171 1.20746 1.00679 0.89350 1.00212 1.20792 0.92806 0.96964 0.93746 1.17847 0.87087 0.87086 0.94312 0.92228 1.59562 1.06443 1.17499 1.54404 1.21616 1.40860 1.02599 0.92460 0.92743 1.24971 0.95397 0.95700 0.97300 1.69899 1.43434 1.08484 1.30992 0.86576 0.78944 0.77495 0.84851 1.20523 1.21157 1.19879 1.18148 0.89491 0.84717 1.01118 1.84914 1.75825 1.35718 1.32248 0.91365 0.91573 0.91687 0.91389 0.91335 0.91372 0.84751 0.83905 0.87576 0.92581 0.76581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 9.38 36.01 0.34 -1.00 16 2 C -0.11 -1.84 5.89 -104.48 -0.62 -2.46 16 3 C -0.09 -1.51 5.88 -104.61 -0.62 -2.12 16 4 C -0.11 -1.39 9.20 36.01 0.33 -1.06 16 5 C -0.04 -0.73 6.31 -39.49 -0.25 -0.98 16 6 Cl -0.09 -1.32 27.28 -51.86 -1.41 -2.74 16 7 C -0.09 -1.78 9.05 -39.57 -0.36 -2.14 16 8 C -0.04 -0.89 5.01 -104.47 -0.52 -1.42 16 9 C 0.25 5.99 2.52 -70.01 -0.18 5.81 16 10 H 0.06 1.59 7.64 -51.93 -0.40 1.20 16 11 N -0.85 -19.40 8.73 -6.65 -0.06 -19.45 16 12 C -0.54 -14.46 8.63 -34.44 -0.30 -14.75 16 13 H 0.05 1.53 7.76 -52.49 -0.41 1.13 16 14 C 0.07 1.87 5.32 -17.82 -0.09 1.78 16 15 N -0.89 -24.48 12.32 55.43 0.68 -23.80 16 16 Si 0.89 21.20 29.55 -169.99 -5.02 16.18 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.11 2.17 6.65 -39.23 -0.26 1.91 16 21 O -0.48 -9.11 11.70 -19.50 -0.23 -9.34 16 22 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.07 0.81 7.54 -51.93 -0.39 0.42 16 24 H 0.06 0.70 5.95 -51.93 -0.31 0.39 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.73 5.95 -51.93 -0.31 0.42 16 27 H 0.07 0.81 6.90 -51.93 -0.36 0.45 16 28 H 0.13 2.59 6.36 -52.49 -0.33 2.26 16 29 H 0.35 8.41 7.96 -39.29 -0.31 8.10 16 30 H 0.31 6.82 7.33 -39.29 -0.29 6.53 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.38 5.48 9.06 45.56 0.41 5.90 16 LS Contribution 281.80 15.07 4.25 4.25 Total: -1.00 -28.72 281.80 -6.99 -35.71 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -2.67 Total: 15.63 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -2.52 Total: -16.43 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.63 Total: -43.25 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.23 Total: -9.34 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.41 Total: -2.74 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.72 -6.99 -35.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238543235.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.594 kcal (2) G-P(sol) polarization free energy of solvation -28.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds