Wall clock time and date at job start Mon Mar 30 2020 06:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38162 * 120.02081 * 2 1 4 4 C 1.50699 * 119.98224 * 0.02562 * 3 2 1 5 5 C 1.38350 * 120.04164 * 179.97438 * 3 2 1 6 6 Cl 1.73597 * 119.95872 * 180.02562 * 5 3 2 7 7 C 1.38386 * 120.08342 * 359.97438 * 5 3 2 8 8 C 1.38123 * 120.04200 * 0.02562 * 7 5 3 9 9 C 1.50707 * 120.01770 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.46800 * 144.99832 * 9 8 7 11 11 N 1.46894 * 109.47101 * 24.99924 * 9 8 7 12 12 C 1.50704 * 109.47114 * 264.99648 * 9 8 7 13 13 H 1.07998 * 119.99731 * 5.43229 * 12 9 8 14 14 C 1.37878 * 120.00077 * 185.42514 * 12 9 8 15 15 N 1.31516 * 119.99755 * 9.57491 * 14 12 9 16 16 Si 1.86799 * 119.99829 * 189.56898 * 14 12 9 17 17 H 1.48498 * 109.46753 * 84.99660 * 16 14 12 18 18 H 1.48501 * 109.46984 * 204.99237 * 16 14 12 19 19 H 1.48496 * 109.47377 * 324.99656 * 16 14 12 20 20 C 1.38699 * 120.01964 * 180.24162 * 2 1 3 21 21 O 1.35922 * 120.04405 * 0.03720 * 20 2 1 22 22 H 1.08998 * 109.47145 * 89.98861 * 1 2 3 23 23 H 1.08996 * 109.46716 * 209.99921 * 1 2 3 24 24 H 1.09002 * 109.46418 * 329.99470 * 1 2 3 25 25 H 1.08995 * 109.47321 * 269.97539 * 4 3 2 26 26 H 1.09002 * 109.46816 * 29.98120 * 4 3 2 27 27 H 1.09006 * 109.46911 * 149.97234 * 4 3 2 28 28 H 1.08001 * 119.97939 * 179.97438 * 7 5 3 29 29 H 1.00899 * 110.99847 * 173.34769 * 11 9 8 30 30 H 1.00896 * 111.00169 * 297.29843 * 11 9 8 31 31 H 0.96994 * 119.99787 * 179.97438 * 15 14 12 32 32 H 0.96697 * 113.99691 * 270.25300 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 1.4449 2.5014 0.0006 5 6 3.5818 1.1968 0.0005 6 17 4.4481 2.7011 0.0012 7 6 4.2759 -0.0004 0.0016 8 6 3.5883 -1.1984 0.0016 9 6 4.3448 -2.5018 0.0022 10 1 3.7988 -3.2384 0.5916 11 7 5.6760 -2.2952 0.5879 12 6 4.4903 -2.9988 -1.4131 13 1 4.1548 -2.3870 -2.2374 14 6 5.0519 -4.2345 -1.6555 15 7 5.2871 -5.0572 -0.6568 16 14 5.4784 -4.7400 -3.4025 17 1 6.8232 -4.2179 -3.7545 18 1 5.4809 -6.2217 -3.5024 19 1 4.4701 -4.1825 -4.3393 20 6 2.2010 -1.2009 -0.0051 21 8 1.5227 -2.3788 -0.0108 22 1 -0.3633 0.0002 -1.0276 23 1 -0.3632 -0.8900 0.5138 24 1 -0.3632 0.8900 0.5139 25 1 1.2632 2.8165 -1.0269 26 1 0.4925 2.3709 0.5145 27 1 2.0340 3.2608 0.5148 28 1 5.3559 0.0019 0.0016 29 1 6.1620 -3.1723 0.6995 30 1 6.2183 -1.6491 0.0343 31 1 5.6818 -5.9266 -0.8274 32 1 1.3225 -2.7216 0.8709 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238543235.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:51 Heat of formation + Delta-G solvation = -60.170329 kcal Electronic energy + Delta-G solvation = -16916.407850 eV Core-core repulsion = 14094.364105 eV Total energy + Delta-G solvation = -2822.043745 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.13196 -38.12314 -37.09138 -36.85782 -34.33253 -32.62788 -31.59526 -28.94158 -27.60618 -27.02854 -23.95040 -22.83679 -20.89522 -18.94992 -18.56358 -17.74071 -17.18594 -16.45684 -16.09548 -15.41925 -15.15687 -14.77520 -14.38345 -14.28130 -13.81964 -13.57661 -13.48143 -13.34760 -13.13081 -12.93293 -12.82580 -12.54705 -12.27732 -12.15100 -11.90230 -11.74533 -11.64693 -11.01141 -10.67514 -9.46044 -9.35990 -9.11313 -8.16443 -6.35589 0.20456 0.40315 1.21093 1.33983 1.36096 1.45260 2.34004 2.63579 3.03326 3.40662 3.87898 3.90690 4.04122 4.36608 4.49646 4.64321 4.70464 4.76535 4.84427 4.90779 4.98680 5.12943 5.17626 5.35009 5.41945 5.52565 5.62523 5.80925 5.87709 6.05572 6.63686 6.77575 6.94174 7.01581 7.34830 8.81245 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023114 B = 0.007114 C = 0.006199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.089382 B = 3934.926159 C = 4515.442438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.108 4.108 3 C -0.086 4.086 4 C -0.111 4.111 5 C -0.049 4.049 6 Cl -0.065 7.065 7 C -0.102 4.102 8 C -0.077 4.077 9 C 0.255 3.745 10 H 0.026 0.974 11 N -0.840 5.840 12 C -0.549 4.549 13 H 0.036 0.964 14 C 0.028 3.972 15 N -0.911 5.911 16 Si 0.950 3.050 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.279 1.279 20 C 0.095 3.905 21 O -0.495 6.495 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.128 0.872 29 H 0.338 0.662 30 H 0.320 0.680 31 H 0.267 0.733 32 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.435 12.731 2.697 14.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.109 4.109 3 C -0.087 4.087 4 C -0.167 4.167 5 C -0.076 4.076 6 Cl -0.036 7.036 7 C -0.121 4.121 8 C -0.079 4.079 9 C 0.145 3.855 10 H 0.044 0.956 11 N -0.367 5.367 12 C -0.589 4.589 13 H 0.054 0.946 14 C -0.173 4.173 15 N -0.550 5.550 16 Si 0.776 3.224 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.204 1.204 20 C 0.050 3.950 21 O -0.306 6.306 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.113 0.887 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.146 0.854 29 H 0.150 0.850 30 H 0.131 0.869 31 H 0.076 0.924 32 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -7.662 13.031 2.791 15.372 hybrid contribution 1.072 -1.292 -1.345 2.151 sum -6.590 11.739 1.446 13.539 Atomic orbital electron populations 1.20734 0.87971 1.03961 1.03045 1.20190 0.98244 0.90521 1.01963 1.19673 0.91044 0.96708 1.01292 1.20922 1.00497 0.91744 1.03538 1.20815 0.92286 0.86684 1.07786 1.98306 1.76675 1.31620 1.97042 1.20696 1.00476 0.89878 1.01039 1.20631 0.93847 0.96186 0.97231 1.17543 0.87436 0.88204 0.92313 0.95581 1.59522 1.06044 1.16858 1.54228 1.21791 1.41049 1.02700 0.93364 0.94615 1.25622 0.95304 0.95710 1.00615 1.69984 1.43809 1.08698 1.32473 0.85700 0.78693 0.77296 0.80721 1.19682 1.20500 1.20372 1.18384 0.89107 0.85846 1.01670 1.84846 1.75667 1.36170 1.33901 0.90851 0.91038 0.88721 0.90050 0.88859 0.90708 0.85380 0.85031 0.86902 0.92413 0.74788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.31 9.38 71.24 0.67 -1.65 16 2 C -0.11 -3.42 5.89 -19.77 -0.12 -3.54 16 3 C -0.09 -2.57 5.88 -19.86 -0.12 -2.68 16 4 C -0.11 -2.30 9.20 71.24 0.66 -1.65 16 5 C -0.05 -1.64 6.31 22.33 0.14 -1.50 16 6 Cl -0.07 -1.83 27.28 -2.72 -0.07 -1.91 16 7 C -0.10 -4.02 9.05 22.28 0.20 -3.82 16 8 C -0.08 -3.41 5.01 -19.77 -0.10 -3.51 16 9 C 0.25 12.88 2.52 43.43 0.11 12.99 16 10 H 0.03 1.47 7.64 -2.39 -0.02 1.46 16 11 N -0.84 -39.54 8.73 -174.95 -1.53 -41.07 16 12 C -0.55 -30.51 8.63 25.60 0.22 -30.29 16 13 H 0.04 2.07 7.76 -2.91 -0.02 2.05 16 14 C 0.03 1.56 5.32 84.65 0.45 2.01 16 15 N -0.91 -51.05 12.32 21.45 0.26 -50.78 16 16 Si 0.95 43.89 29.55 68.60 2.03 45.91 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 C 0.10 3.74 6.65 22.50 0.15 3.89 16 21 O -0.49 -19.14 11.70 -92.68 -1.08 -20.23 16 22 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.07 1.57 7.54 -2.39 -0.02 1.55 16 24 H 0.09 1.60 5.95 -2.39 -0.01 1.59 16 25 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.09 1.50 5.95 -2.39 -0.01 1.48 16 27 H 0.07 1.48 6.90 -2.38 -0.02 1.47 16 28 H 0.13 5.04 6.36 -2.91 -0.02 5.03 16 29 H 0.34 16.90 7.96 -89.69 -0.71 16.19 16 30 H 0.32 14.31 7.33 -89.70 -0.66 13.66 16 31 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 32 H 0.39 11.72 9.06 -74.06 -0.67 11.05 16 Total: -1.00 -62.25 281.80 1.02 -61.23 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: -0.85 Total: 36.58 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 2.26 Total: -29.75 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -1.26 Total: -91.85 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -1.08 Total: -20.23 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.07 Total: -1.91 kcal Total: -62.25 1.02 -61.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238543235.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.063 kcal (2) G-P(sol) polarization free energy of solvation -62.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds