Wall clock time and date at job start Mon Mar 30 2020 06:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00160 * 2 1 4 4 H 1.48503 * 109.46823 * 239.99941 * 3 2 1 5 5 H 1.48494 * 109.47227 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46958 * 120.00329 * 3 2 1 7 7 C 1.37881 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99974 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99828 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46999 * 179.97438 * 9 7 2 11 11 C 1.46903 * 110.99766 * 293.94772 * 10 9 7 12 12 C 1.50698 * 109.47261 * 301.05664 * 11 10 9 13 13 C 1.31167 * 119.99822 * 234.37899 * 12 11 10 14 14 Cl 1.73606 * 119.99736 * 359.97438 * 13 12 11 15 15 C 1.46898 * 110.99930 * 169.99829 * 10 9 7 16 16 C 1.50700 * 109.47082 * 200.29311 * 15 10 9 17 17 C 1.34514 * 125.79063 * 85.21015 * 16 15 10 18 18 C 1.41386 * 106.84173 * 179.88854 * 17 16 15 19 19 C 1.34516 * 106.83801 * 0.37694 * 18 17 16 20 20 O 1.34303 * 125.78893 * 265.52201 * 16 15 10 21 21 H 0.96999 * 119.99700 * 0.02562 * 1 2 3 22 22 H 1.08992 * 109.47740 * 59.99499 * 9 7 2 23 23 H 1.09002 * 109.46896 * 299.99336 * 9 7 2 24 24 H 1.08999 * 109.46918 * 181.05223 * 11 10 9 25 25 H 1.09005 * 109.46958 * 61.05437 * 11 10 9 26 26 H 1.08002 * 120.00420 * 54.36988 * 12 11 10 27 27 H 1.07994 * 120.00112 * 179.97438 * 13 12 11 28 28 H 1.08999 * 109.46962 * 320.29353 * 15 10 9 29 29 H 1.09005 * 109.47339 * 80.29095 * 15 10 9 30 30 H 1.08002 * 126.57834 * 0.02900 * 17 16 15 31 31 H 1.07993 * 126.57933 * 180.16053 * 18 17 16 32 32 H 1.08004 * 125.78720 * 179.74777 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 2.9707 -3.6542 -1.2529 12 6 2.0232 -3.8007 -2.4156 13 6 2.1850 -4.7790 -3.2741 14 17 3.4911 -5.9047 -3.0713 15 6 1.5210 -4.8935 0.2387 16 6 2.5179 -5.9149 0.7225 17 6 2.9093 -6.0896 1.9975 18 6 3.8462 -7.1485 1.9969 19 6 3.9775 -7.5519 0.7204 20 8 3.1705 -6.8012 -0.0470 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8895 23 1 0.6240 -2.5567 0.8904 24 1 3.6565 -4.5011 -1.2340 25 1 3.5379 -2.7296 -1.3607 26 1 1.2109 -3.1002 -2.5419 27 1 1.5059 -4.8843 -4.1071 28 1 0.7467 -4.7557 0.9934 29 1 1.0663 -5.2407 -0.6892 30 1 2.5709 -5.5301 2.8571 31 1 4.3605 -7.5532 2.8560 32 1 4.6227 -8.3448 0.3718 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255310647.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:36 Heat of formation + Delta-G solvation = 34.091203 kcal Electronic energy + Delta-G solvation = -16801.794431 eV Core-core repulsion = 13983.838173 eV Total energy + Delta-G solvation = -2817.956258 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.12442 -37.64929 -36.05443 -32.83484 -32.72276 -32.10206 -30.04295 -27.05073 -26.08228 -23.73466 -21.35142 -21.31366 -20.11264 -18.96869 -17.00525 -16.32590 -15.89585 -15.44656 -14.92500 -14.68376 -14.00261 -13.98084 -13.45829 -12.53436 -12.42005 -12.30766 -12.08071 -11.88484 -11.69722 -11.30267 -11.11632 -10.90924 -10.76348 -10.69973 -10.13817 -9.85323 -9.52483 -9.37523 -8.67802 -8.50056 -8.07595 -7.38900 -6.08956 -4.10375 2.11637 2.30027 2.71735 3.00427 3.30803 3.35087 3.37948 3.40819 4.38947 4.99110 5.12311 5.21122 5.27615 5.37833 5.40293 5.77022 5.82114 5.96194 6.14448 6.16467 6.32322 6.42125 6.49273 6.63842 6.74616 6.88696 7.16650 7.22711 7.56937 7.71722 7.96494 8.07305 8.42536 8.96560 9.54193 11.01579 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.006749 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.937787 B = 4147.915313 C = 4964.155001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.189 3.811 10 N -0.521 5.521 11 C 0.077 3.923 12 C -0.150 4.150 13 C -0.128 4.128 14 Cl -0.101 7.101 15 C 0.127 3.873 16 C 0.016 3.984 17 C -0.206 4.206 18 C -0.215 4.215 19 C -0.059 4.059 20 O -0.167 6.167 21 H 0.262 0.738 22 H 0.000 1.000 23 H 0.032 0.968 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.141 0.859 27 H 0.138 0.862 28 H 0.097 0.903 29 H 0.045 0.955 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.463 -12.519 -2.417 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.065 3.935 10 N -0.244 5.244 11 C -0.051 4.051 12 C -0.171 4.171 13 C -0.173 4.173 14 Cl -0.073 7.073 15 C -0.002 4.002 16 C -0.035 4.035 17 C -0.226 4.226 18 C -0.234 4.234 19 C -0.127 4.127 20 O -0.063 6.063 21 H 0.072 0.928 22 H 0.017 0.983 23 H 0.050 0.950 24 H 0.096 0.904 25 H 0.113 0.887 26 H 0.158 0.842 27 H 0.156 0.844 28 H 0.115 0.885 29 H 0.063 0.937 30 H 0.162 0.838 31 H 0.158 0.842 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 4.694 -12.409 -2.304 13.466 hybrid contribution -0.037 0.760 -0.412 0.866 sum 4.657 -11.649 -2.716 12.836 Atomic orbital electron populations 1.69936 1.06021 1.27002 1.50815 1.24956 0.94849 0.99253 0.95333 0.86569 0.79467 0.82725 0.78735 1.20258 1.21359 1.20122 1.21082 0.93517 0.89710 1.50368 0.91842 1.19851 0.90122 0.86990 0.96539 1.62358 1.28371 1.01699 1.31927 1.21503 0.95155 1.03380 0.85057 1.24228 1.00825 0.95763 0.96243 1.24358 0.94964 0.94939 1.03079 1.98324 1.49916 1.62186 1.96871 1.20532 0.91507 0.87518 1.00607 1.22597 0.98303 0.93094 0.89528 1.21512 1.02226 1.01267 0.97553 1.21752 1.03397 1.00758 0.97494 1.23833 0.98953 0.99646 0.90241 1.84094 1.45222 1.38966 1.37970 0.92802 0.98254 0.94960 0.90365 0.88671 0.84173 0.84436 0.88469 0.93675 0.83791 0.84191 0.79075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.61 13.29 55.43 0.74 -24.87 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.51 -13.61 8.53 -34.44 -0.29 -13.90 16 8 H 0.06 1.70 7.10 -52.49 -0.37 1.33 16 9 C 0.19 4.59 4.50 -4.98 -0.02 4.57 16 10 N -0.52 -10.80 4.62 -238.96 -1.10 -11.90 16 11 C 0.08 1.48 5.34 -4.97 -0.03 1.45 16 12 C -0.15 -2.60 7.56 -36.07 -0.27 -2.87 16 13 C -0.13 -1.92 10.82 28.97 0.31 -1.61 16 14 Cl -0.10 -1.50 26.46 -51.86 -1.37 -2.87 16 15 C 0.13 2.28 5.42 -4.98 -0.03 2.25 16 16 C 0.02 0.27 6.21 -35.62 -0.22 0.05 16 17 C -0.21 -3.32 10.81 -39.70 -0.43 -3.75 16 18 C -0.21 -3.00 10.91 -39.70 -0.43 -3.43 16 19 C -0.06 -0.79 12.09 29.42 0.36 -0.44 16 20 O -0.17 -2.71 9.88 5.71 0.06 -2.65 16 21 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 22 H 0.00 -0.01 6.08 -51.93 -0.32 -0.32 16 23 H 0.03 0.84 7.82 -51.93 -0.41 0.43 16 24 H 0.08 1.45 5.20 -51.93 -0.27 1.18 16 25 H 0.10 1.98 6.89 -51.93 -0.36 1.62 16 26 H 0.14 2.60 6.60 -52.49 -0.35 2.25 16 27 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.10 1.69 7.72 -51.93 -0.40 1.29 16 29 H 0.05 0.79 6.84 -51.93 -0.36 0.44 16 30 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 31 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.19 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 287.53 15.07 4.33 4.33 Total: -1.00 -28.58 287.53 -7.18 -35.75 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -3.65 Total: 2.31 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -1.15 Total: -16.20 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.37 Total: -36.77 kcal Atomic # 8 Polarization: -2.71 SS G_CDS: 0.06 Total: -2.65 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -1.37 Total: -2.87 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.58 -7.18 -35.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255310647.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.844 kcal (2) G-P(sol) polarization free energy of solvation -28.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds