Wall clock time and date at job start Mon Mar 30 2020 06:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00160 * 2 1 4 4 H 1.48503 * 109.46823 * 239.99941 * 3 2 1 5 5 H 1.48494 * 109.47227 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46958 * 120.00329 * 3 2 1 7 7 C 1.37881 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99974 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99828 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46999 * 179.97438 * 9 7 2 11 11 C 1.46903 * 110.99766 * 293.94772 * 10 9 7 12 12 C 1.50698 * 109.47261 * 301.05664 * 11 10 9 13 13 C 1.31167 * 119.99822 * 234.37899 * 12 11 10 14 14 Cl 1.73606 * 119.99736 * 359.97438 * 13 12 11 15 15 C 1.46898 * 110.99930 * 169.99829 * 10 9 7 16 16 C 1.50700 * 109.47082 * 200.29311 * 15 10 9 17 17 C 1.34514 * 125.79063 * 85.21015 * 16 15 10 18 18 C 1.41386 * 106.84173 * 179.88854 * 17 16 15 19 19 C 1.34516 * 106.83801 * 0.37694 * 18 17 16 20 20 O 1.34303 * 125.78893 * 265.52201 * 16 15 10 21 21 H 0.96999 * 119.99700 * 0.02562 * 1 2 3 22 22 H 1.08992 * 109.47740 * 59.99499 * 9 7 2 23 23 H 1.09002 * 109.46896 * 299.99336 * 9 7 2 24 24 H 1.08999 * 109.46918 * 181.05223 * 11 10 9 25 25 H 1.09005 * 109.46958 * 61.05437 * 11 10 9 26 26 H 1.08002 * 120.00420 * 54.36988 * 12 11 10 27 27 H 1.07994 * 120.00112 * 179.97438 * 13 12 11 28 28 H 1.08999 * 109.46962 * 320.29353 * 15 10 9 29 29 H 1.09005 * 109.47339 * 80.29095 * 15 10 9 30 30 H 1.08002 * 126.57834 * 0.02900 * 17 16 15 31 31 H 1.07993 * 126.57933 * 180.16053 * 18 17 16 32 32 H 1.08004 * 125.78720 * 179.74777 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 2.9707 -3.6542 -1.2529 12 6 2.0232 -3.8007 -2.4156 13 6 2.1850 -4.7790 -3.2741 14 17 3.4911 -5.9047 -3.0713 15 6 1.5210 -4.8935 0.2387 16 6 2.5179 -5.9149 0.7225 17 6 2.9093 -6.0896 1.9975 18 6 3.8462 -7.1485 1.9969 19 6 3.9775 -7.5519 0.7204 20 8 3.1705 -6.8012 -0.0470 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8895 23 1 0.6240 -2.5567 0.8904 24 1 3.6565 -4.5011 -1.2340 25 1 3.5379 -2.7296 -1.3607 26 1 1.2109 -3.1002 -2.5419 27 1 1.5059 -4.8843 -4.1071 28 1 0.7467 -4.7557 0.9934 29 1 1.0663 -5.2407 -0.6892 30 1 2.5709 -5.5301 2.8571 31 1 4.3605 -7.5532 2.8560 32 1 4.6227 -8.3448 0.3718 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255310647.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:36 Heat of formation + Delta-G solvation = 17.114767 kcal Electronic energy + Delta-G solvation = -16802.530585 eV Core-core repulsion = 13983.838173 eV Total energy + Delta-G solvation = -2818.692412 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.30937 -39.19779 -37.36833 -34.82360 -33.98474 -33.44058 -31.49961 -28.86552 -27.48382 -25.49211 -22.98541 -22.47341 -21.37090 -20.42657 -18.53487 -17.91628 -17.35150 -16.93498 -16.53236 -16.18702 -15.64016 -15.26875 -15.00669 -14.19651 -13.61733 -13.56287 -13.49268 -13.43926 -13.06260 -13.03022 -12.71014 -12.64181 -12.44189 -12.32194 -11.96646 -11.41029 -11.27908 -10.69333 -10.58874 -10.00712 -9.29806 -9.04194 -8.18168 -6.26566 0.90179 0.99858 1.42874 1.44425 1.45033 1.52345 1.83453 2.22964 2.42611 3.15109 3.45983 3.88355 3.93108 4.22360 4.26735 4.30668 4.50517 4.52914 4.67908 4.94225 5.02710 5.14076 5.18227 5.21648 5.30067 5.35828 5.39365 5.67552 5.74063 6.05130 6.25199 6.40881 6.56335 6.87514 7.42263 8.91949 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.006749 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.937787 B = 4147.915313 C = 4964.155001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.206 3.794 10 N -0.530 5.530 11 C 0.085 3.915 12 C -0.176 4.176 13 C -0.098 4.098 14 Cl -0.093 7.093 15 C 0.132 3.868 16 C -0.010 4.010 17 C -0.213 4.213 18 C -0.223 4.223 19 C -0.048 4.048 20 O -0.178 6.178 21 H 0.264 0.736 22 H -0.013 1.013 23 H 0.007 0.993 24 H 0.087 0.913 25 H 0.071 0.929 26 H 0.124 0.876 27 H 0.169 0.831 28 H 0.094 0.906 29 H 0.048 0.952 30 H 0.143 0.857 31 H 0.167 0.833 32 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.858 -13.768 -2.937 15.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.076 0.924 9 C 0.080 3.920 10 N -0.253 5.253 11 C -0.043 4.043 12 C -0.197 4.197 13 C -0.143 4.143 14 Cl -0.065 7.065 15 C 0.004 3.996 16 C -0.060 4.060 17 C -0.234 4.234 18 C -0.242 4.242 19 C -0.115 4.115 20 O -0.074 6.074 21 H 0.073 0.927 22 H 0.005 0.995 23 H 0.025 0.975 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.142 0.858 27 H 0.186 0.814 28 H 0.112 0.888 29 H 0.066 0.934 30 H 0.161 0.839 31 H 0.185 0.815 32 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 6.102 -13.675 -2.825 15.239 hybrid contribution -0.413 0.996 -0.256 1.108 sum 5.689 -12.679 -3.081 14.235 Atomic orbital electron populations 1.70048 1.07405 1.27844 1.51767 1.25747 0.95633 1.02603 0.94958 0.85571 0.78284 0.78651 0.78938 1.19433 1.20883 1.19742 1.21371 0.93448 0.91066 1.50008 0.92363 1.19477 0.90050 0.87827 0.94608 1.62237 1.27735 1.02071 1.33275 1.21341 0.95239 1.02445 0.85254 1.23863 1.01143 0.97516 0.97170 1.24684 0.94260 0.93088 1.02276 1.98332 1.49679 1.61649 1.96828 1.20403 0.91877 0.86607 1.00675 1.22291 0.99605 0.94123 0.90004 1.21756 1.02522 1.01852 0.97227 1.22067 1.03122 1.00152 0.98860 1.24694 0.97675 0.99175 0.90005 1.84070 1.45693 1.39153 1.38457 0.92715 0.99515 0.97504 0.89528 0.91038 0.85804 0.81365 0.88762 0.93389 0.83946 0.81533 0.75027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.10 13.29 21.45 0.28 -53.81 16 2 C 0.01 0.50 5.46 84.66 0.46 0.96 16 3 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.52 -28.59 8.53 25.60 0.22 -28.37 16 8 H 0.06 3.19 7.10 -2.91 -0.02 3.17 16 9 C 0.21 10.40 4.50 85.56 0.38 10.78 16 10 N -0.53 -22.58 4.62 -909.94 -4.20 -26.78 16 11 C 0.08 3.30 5.34 85.56 0.46 3.76 16 12 C -0.18 -6.11 7.56 25.48 0.19 -5.92 16 13 C -0.10 -2.77 10.82 67.61 0.73 -2.04 16 14 Cl -0.09 -2.56 26.46 -2.72 -0.07 -2.63 16 15 C 0.13 4.84 5.42 85.56 0.46 5.30 16 16 C -0.01 -0.32 6.21 24.83 0.15 -0.17 16 17 C -0.21 -6.71 10.81 22.19 0.24 -6.47 16 18 C -0.22 -5.65 10.91 22.19 0.24 -5.41 16 19 C -0.05 -1.15 12.09 66.97 0.81 -0.34 16 20 O -0.18 -5.42 9.88 -2.50 -0.02 -5.44 16 21 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 22 H -0.01 -0.67 6.08 -2.39 -0.01 -0.68 16 23 H 0.01 0.38 7.82 -2.39 -0.02 0.36 16 24 H 0.09 3.18 5.20 -2.39 -0.01 3.17 16 25 H 0.07 3.06 6.89 -2.38 -0.02 3.05 16 26 H 0.12 4.74 6.60 -2.91 -0.02 4.72 16 27 H 0.17 3.75 8.06 -2.91 -0.02 3.72 16 28 H 0.09 3.41 7.72 -2.39 -0.02 3.40 16 29 H 0.05 1.70 6.84 -2.38 -0.02 1.69 16 30 H 0.14 4.40 8.06 -2.91 -0.02 4.37 16 31 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.23 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -61.53 287.53 3.49 -58.04 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.12 Total: 12.91 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 4.36 Total: -27.92 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -3.92 Total: -80.60 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.02 Total: -5.44 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -0.07 Total: -2.63 kcal Total: -61.53 3.49 -58.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255310647.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.152 kcal (2) G-P(sol) polarization free energy of solvation -61.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds