Wall clock time and date at job start Mon Mar 30 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31464 * 1 3 3 Si 1.86803 * 119.99904 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99546 * 3 2 1 5 5 H 1.48494 * 109.47191 * 29.99495 * 3 2 1 6 6 H 1.48500 * 109.47362 * 150.00005 * 3 2 1 7 7 C 1.38884 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00134 * 359.97438 * 7 2 1 9 9 N 1.37195 * 119.99927 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00019 * 180.02562 * 9 7 2 11 11 O 1.21507 * 120.00243 * 359.97438 * 10 9 7 12 12 O 1.34665 * 119.99839 * 179.97438 * 10 9 7 13 13 C 1.45201 * 117.00111 * 179.97438 * 12 10 9 14 14 C 1.50693 * 109.47687 * 180.02562 * 13 12 10 15 15 C 1.38240 * 119.98557 * 269.73032 * 14 13 12 16 16 C 1.38216 * 120.01374 * 179.72350 * 15 14 13 17 17 C 1.38359 * 119.98608 * 0.54248 * 16 15 14 18 18 Cl 1.73596 * 120.01492 * 179.70551 * 17 16 15 19 19 C 1.38352 * 119.97127 * 359.72993 * 17 16 15 20 20 C 1.38214 * 119.98645 * 359.97438 * 19 17 16 21 21 H 0.96996 * 120.00364 * 0.02562 * 1 2 3 22 22 H 0.96999 * 119.99933 * 359.97438 * 9 7 2 23 23 H 1.08998 * 109.46979 * 300.00557 * 13 12 10 24 24 H 1.08999 * 109.46835 * 59.99928 * 13 12 10 25 25 H 1.07995 * 119.99765 * 359.97438 * 15 14 13 26 26 H 1.08001 * 120.01298 * 180.27264 * 16 15 14 27 27 H 1.07994 * 120.00719 * 179.97438 * 19 17 16 28 28 H 1.08000 * 119.99781 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 2.4962 2.0464 -1.4001 5 1 1.4461 2.6527 0.6999 6 1 3.5462 1.4403 0.7000 7 6 2.0091 -1.2028 0.0005 8 1 1.4691 -2.1381 0.0014 9 7 3.3810 -1.2027 0.0011 10 6 4.0549 -2.3699 0.0011 11 8 3.4475 -3.4222 0.0011 12 8 5.4016 -2.3699 0.0011 13 6 6.0609 -3.6636 0.0016 14 6 7.5548 -3.4662 0.0022 15 6 8.2410 -3.3815 -1.1949 16 6 9.6104 -3.1948 -1.1951 17 6 10.2961 -3.1037 0.0032 18 17 12.0172 -2.8768 0.0038 19 6 9.6096 -3.1941 1.2009 20 6 8.2393 -3.3748 1.1998 21 1 -0.4850 0.8400 -0.0004 22 1 3.8660 -0.3627 0.0007 23 1 5.7679 -4.2202 0.8918 24 1 5.7680 -4.2209 -0.8881 25 1 7.7064 -3.4573 -2.1302 26 1 10.1459 -3.1242 -2.1304 27 1 10.1442 -3.1236 2.1366 28 1 7.7032 -3.4458 2.1347 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258550480.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:04 Heat of formation + Delta-G solvation = -61.949121 kcal Electronic energy + Delta-G solvation = -15574.494325 eV Core-core repulsion = 12616.540351 eV Total energy + Delta-G solvation = -2957.953974 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.83327 -39.06719 -36.79305 -35.89390 -34.04060 -32.06992 -31.55159 -31.30095 -26.61682 -24.72160 -23.06671 -21.58066 -20.35310 -18.96558 -17.42706 -16.91668 -16.16020 -16.00749 -15.25344 -15.07534 -14.60100 -13.81281 -13.74666 -13.67550 -13.06686 -12.73318 -12.49425 -12.22372 -11.74514 -11.73673 -11.29263 -11.24860 -11.04867 -10.59538 -10.12463 -10.06746 -9.68100 -9.37539 -9.25668 -8.86683 -8.31186 -6.34893 -3.91373 0.80790 1.08080 1.87258 3.01416 3.06223 3.10664 3.17721 3.67976 3.85034 4.08816 4.53944 4.64087 4.67224 5.05288 5.10942 5.20493 5.41956 5.48484 5.56949 5.72621 5.75468 5.97994 5.98004 6.36325 6.55124 6.95438 7.52389 8.06047 8.47849 8.82452 9.31257 9.75963 10.77177 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.037210 B = 0.004002 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.304143 B = 6995.093985 C = 7442.678844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.303 4.303 8 H 0.123 0.877 9 N -0.566 5.566 10 C 0.594 3.406 11 O -0.598 6.598 12 O -0.382 6.382 13 C 0.130 3.870 14 C -0.082 4.082 15 C -0.083 4.083 16 C -0.115 4.115 17 C -0.031 4.031 18 Cl -0.075 7.075 19 C -0.115 4.115 20 C -0.083 4.083 21 H 0.275 0.725 22 H 0.380 0.620 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.228 -3.953 -0.009 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.157 4.157 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.430 4.430 8 H 0.141 0.859 9 N -0.212 5.212 10 C 0.346 3.654 11 O -0.491 6.491 12 O -0.298 6.298 13 C 0.055 3.945 14 C -0.082 4.082 15 C -0.101 4.101 16 C -0.133 4.133 17 C -0.057 4.057 18 Cl -0.046 7.046 19 C -0.133 4.133 20 C -0.101 4.101 21 H 0.086 0.914 22 H 0.213 0.787 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.154 0.846 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 20.929 -4.340 -0.008 21.374 hybrid contribution 0.681 1.279 0.014 1.449 sum 21.610 -3.061 0.007 21.826 Atomic orbital electron populations 1.69617 1.05438 1.27683 1.49169 1.24910 0.95495 0.97903 0.97403 0.86672 0.79899 0.83833 0.79129 1.19431 1.19985 1.19252 1.19300 0.77166 0.97032 1.49536 0.85936 1.40881 1.06789 1.03900 1.69661 1.17752 0.79419 0.85473 0.82739 1.90847 1.68084 1.30604 1.59561 1.86187 1.21055 1.33570 1.88967 1.21420 0.86150 0.83449 1.03507 1.19826 0.94668 1.00268 0.93478 1.21125 0.93280 0.97332 0.98352 1.21048 0.94299 1.01037 0.96959 1.20990 0.84712 1.04643 0.95370 1.98368 1.11808 1.95482 1.98976 1.21044 0.94276 1.01055 0.96969 1.21126 0.93277 0.97324 0.98358 0.91406 0.78679 0.90524 0.90507 0.84575 0.84736 0.84740 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.38 13.96 55.49 0.77 -24.61 15 2 C 0.05 1.26 5.50 -17.47 -0.10 1.17 15 3 Si 0.88 19.50 27.74 -169.99 -4.71 14.78 15 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 5 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 6 H -0.27 -5.55 6.52 56.52 0.37 -5.18 15 7 C -0.30 -8.58 10.16 -14.91 -0.15 -8.73 15 8 H 0.12 3.90 7.39 -52.49 -0.39 3.51 15 9 N -0.57 -14.06 5.10 -15.38 -0.08 -14.14 15 10 C 0.59 14.28 8.70 54.06 0.47 14.75 15 11 O -0.60 -16.11 15.71 -19.28 -0.30 -16.41 15 12 O -0.38 -7.50 10.26 -40.39 -0.41 -7.92 15 13 C 0.13 2.01 5.60 36.00 0.20 2.21 15 14 C -0.08 -1.04 5.52 -104.62 -0.58 -1.61 15 15 C -0.08 -0.92 9.70 -39.59 -0.38 -1.31 15 16 C -0.11 -1.17 9.83 -39.54 -0.39 -1.55 15 17 C -0.03 -0.32 6.32 -39.49 -0.25 -0.57 15 18 Cl -0.08 -0.71 28.96 -51.86 -1.50 -2.22 15 19 C -0.11 -1.17 9.83 -39.55 -0.39 -1.56 15 20 C -0.08 -0.93 9.70 -39.59 -0.38 -1.31 15 21 H 0.28 7.32 8.31 -40.82 -0.34 6.98 15 22 H 0.38 8.51 5.87 -40.82 -0.24 8.27 15 23 H 0.08 1.15 8.08 -51.93 -0.42 0.73 15 24 H 0.08 1.15 8.08 -51.93 -0.42 0.73 15 25 H 0.14 1.34 8.06 -52.49 -0.42 0.92 15 26 H 0.13 1.10 8.06 -52.49 -0.42 0.68 15 27 H 0.13 1.10 8.06 -52.49 -0.42 0.68 15 28 H 0.14 1.35 8.06 -52.49 -0.42 0.93 15 LS Contribution 273.27 15.07 4.12 4.12 Total: -1.00 -31.37 273.27 -6.39 -37.76 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -2.33 Total: 7.15 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.95 Total: 1.48 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.70 Total: -38.75 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.72 Total: -24.33 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.71 Total: 14.78 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.37 -6.39 -37.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258550480.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.190 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds