Wall clock time and date at job start Mon Mar 30 2020 06:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31464 * 1 3 3 Si 1.86803 * 119.99904 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99546 * 3 2 1 5 5 H 1.48494 * 109.47191 * 29.99495 * 3 2 1 6 6 H 1.48500 * 109.47362 * 150.00005 * 3 2 1 7 7 C 1.38884 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00134 * 359.97438 * 7 2 1 9 9 N 1.37195 * 119.99927 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00019 * 180.02562 * 9 7 2 11 11 O 1.21507 * 120.00243 * 359.97438 * 10 9 7 12 12 O 1.34665 * 119.99839 * 179.97438 * 10 9 7 13 13 C 1.45201 * 117.00111 * 179.97438 * 12 10 9 14 14 C 1.50693 * 109.47687 * 180.02562 * 13 12 10 15 15 C 1.38240 * 119.98557 * 269.73032 * 14 13 12 16 16 C 1.38216 * 120.01374 * 179.72350 * 15 14 13 17 17 C 1.38359 * 119.98608 * 0.54248 * 16 15 14 18 18 Cl 1.73596 * 120.01492 * 179.70551 * 17 16 15 19 19 C 1.38352 * 119.97127 * 359.72993 * 17 16 15 20 20 C 1.38214 * 119.98645 * 359.97438 * 19 17 16 21 21 H 0.96996 * 120.00364 * 0.02562 * 1 2 3 22 22 H 0.96999 * 119.99933 * 359.97438 * 9 7 2 23 23 H 1.08998 * 109.46979 * 300.00557 * 13 12 10 24 24 H 1.08999 * 109.46835 * 59.99928 * 13 12 10 25 25 H 1.07995 * 119.99765 * 359.97438 * 15 14 13 26 26 H 1.08001 * 120.01298 * 180.27264 * 16 15 14 27 27 H 1.07994 * 120.00719 * 179.97438 * 19 17 16 28 28 H 1.08000 * 119.99781 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 2.4962 2.0464 -1.4001 5 1 1.4461 2.6527 0.6999 6 1 3.5462 1.4403 0.7000 7 6 2.0091 -1.2028 0.0005 8 1 1.4691 -2.1381 0.0014 9 7 3.3810 -1.2027 0.0011 10 6 4.0549 -2.3699 0.0011 11 8 3.4475 -3.4222 0.0011 12 8 5.4016 -2.3699 0.0011 13 6 6.0609 -3.6636 0.0016 14 6 7.5548 -3.4662 0.0022 15 6 8.2410 -3.3815 -1.1949 16 6 9.6104 -3.1948 -1.1951 17 6 10.2961 -3.1037 0.0032 18 17 12.0172 -2.8768 0.0038 19 6 9.6096 -3.1941 1.2009 20 6 8.2393 -3.3748 1.1998 21 1 -0.4850 0.8400 -0.0004 22 1 3.8660 -0.3627 0.0007 23 1 5.7679 -4.2202 0.8918 24 1 5.7680 -4.2209 -0.8881 25 1 7.7064 -3.4573 -2.1302 26 1 10.1459 -3.1242 -2.1304 27 1 10.1442 -3.1236 2.1366 28 1 7.7032 -3.4458 2.1347 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258550480.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:03 Heat of formation + Delta-G solvation = -82.213743 kcal Electronic energy + Delta-G solvation = -15575.373065 eV Core-core repulsion = 12616.540351 eV Total energy + Delta-G solvation = -2958.832714 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.31698 -40.28341 -37.86805 -37.33175 -36.07886 -33.89776 -32.85057 -32.11456 -28.01477 -26.52189 -23.88629 -22.66997 -22.08632 -20.98267 -18.92295 -18.24965 -17.59698 -17.51330 -16.57716 -16.33797 -16.15051 -15.02077 -14.92118 -14.55991 -14.53990 -14.28910 -14.21854 -13.81889 -13.04633 -12.64354 -12.56725 -12.46425 -12.29535 -12.03748 -11.83335 -11.70165 -11.56899 -11.35480 -10.39216 -10.06571 -9.75480 -8.44693 -6.10443 -0.10593 0.27096 1.08264 1.31707 1.35311 1.42526 1.62380 1.93596 2.20698 2.63510 3.09791 3.49589 3.69728 3.88848 3.95838 4.09198 4.24446 4.44597 4.51740 4.64156 4.95114 5.10419 5.17217 5.23892 5.46743 5.50838 5.71614 5.91217 6.45198 6.71331 7.21755 7.82534 8.71231 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.037210 B = 0.004002 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.304143 B = 6995.093985 C = 7442.678844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.003 4.003 3 Si 0.959 3.041 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.241 1.241 7 C -0.325 4.325 8 H 0.069 0.931 9 N -0.565 5.565 10 C 0.602 3.398 11 O -0.634 6.634 12 O -0.372 6.372 13 C 0.125 3.875 14 C -0.100 4.100 15 C -0.086 4.086 16 C -0.114 4.114 17 C -0.034 4.034 18 Cl -0.065 7.065 19 C -0.114 4.114 20 C -0.086 4.086 21 H 0.283 0.717 22 H 0.394 0.606 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.146 0.854 26 H 0.155 0.845 27 H 0.155 0.845 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.003 -2.403 0.003 24.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.779 3.221 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.165 1.165 7 C -0.453 4.453 8 H 0.087 0.913 9 N -0.214 5.214 10 C 0.354 3.646 11 O -0.529 6.529 12 O -0.287 6.287 13 C 0.050 3.950 14 C -0.100 4.100 15 C -0.104 4.104 16 C -0.133 4.133 17 C -0.061 4.061 18 Cl -0.036 7.036 19 C -0.133 4.133 20 C -0.104 4.104 21 H 0.093 0.907 22 H 0.230 0.770 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.164 0.836 26 H 0.173 0.827 27 H 0.173 0.827 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 23.746 -2.807 0.005 23.911 hybrid contribution -0.104 0.662 0.008 0.670 sum 23.642 -2.144 0.013 23.739 Atomic orbital electron populations 1.69765 1.07637 1.29508 1.49494 1.25882 0.96418 1.02202 0.95782 0.85443 0.79265 0.77273 0.80114 1.17976 1.19257 1.16472 1.18893 0.78766 0.95768 1.51828 0.91306 1.40621 1.05694 1.04883 1.70211 1.17855 0.80707 0.84691 0.81303 1.90821 1.69456 1.31929 1.60661 1.86205 1.18162 1.36099 1.88240 1.21733 0.87805 0.81721 1.03694 1.19669 0.92686 1.02848 0.94838 1.21271 0.93902 0.96992 0.98250 1.21263 0.93875 1.00238 0.97886 1.21183 0.85328 1.03935 0.95609 1.98376 1.10947 1.95359 1.98966 1.21257 0.93846 1.00268 0.97899 1.21271 0.93907 0.97011 0.98254 0.90719 0.76970 0.90452 0.90410 0.83645 0.82714 0.82730 0.83685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.34 13.96 21.65 0.30 -54.04 15 2 C 0.00 -0.16 5.50 84.90 0.47 0.31 15 3 Si 0.96 39.03 27.74 68.60 1.90 40.93 15 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 15 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 15 6 H -0.24 -8.72 6.52 99.48 0.65 -8.08 15 7 C -0.32 -18.93 10.16 84.01 0.85 -18.07 15 8 H 0.07 4.66 7.39 -2.91 -0.02 4.64 15 9 N -0.57 -28.07 5.10 -432.96 -2.21 -30.28 15 10 C 0.60 29.14 8.70 129.79 1.13 30.27 15 11 O -0.63 -35.15 15.71 19.82 0.31 -34.84 15 12 O -0.37 -14.34 10.26 -55.74 -0.57 -14.91 15 13 C 0.12 3.79 5.60 71.23 0.40 4.19 15 14 C -0.10 -2.39 5.52 -19.86 -0.11 -2.50 15 15 C -0.09 -1.76 9.70 22.26 0.22 -1.55 15 16 C -0.11 -2.03 9.83 22.29 0.22 -1.81 15 17 C -0.03 -0.62 6.32 22.33 0.14 -0.47 15 18 Cl -0.07 -1.07 28.96 -2.72 -0.08 -1.15 15 19 C -0.11 -2.03 9.83 22.29 0.22 -1.81 15 20 C -0.09 -1.77 9.70 22.27 0.22 -1.56 15 21 H 0.28 15.14 8.31 -92.71 -0.77 14.37 15 22 H 0.39 16.94 5.87 -92.71 -0.54 16.40 15 23 H 0.08 2.32 8.08 -2.39 -0.02 2.30 15 24 H 0.08 2.33 8.08 -2.39 -0.02 2.31 15 25 H 0.15 2.62 8.06 -2.91 -0.02 2.60 15 26 H 0.16 2.06 8.06 -2.91 -0.02 2.04 15 27 H 0.16 2.07 8.06 -2.91 -0.02 2.05 15 28 H 0.15 2.63 8.06 -2.91 -0.02 2.61 15 Total: -1.00 -69.11 273.27 4.00 -65.11 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.59 Total: 22.19 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 3.75 Total: 7.00 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -1.90 Total: -84.32 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -0.26 Total: -49.75 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 1.90 Total: 40.93 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -69.11 4.00 -65.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258550480.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.104 kcal (2) G-P(sol) polarization free energy of solvation -69.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds