Wall clock time and date at job start Mon Mar 30 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31472 * 1 3 3 Si 1.86797 * 120.00231 * 2 1 4 4 H 1.48504 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46917 * 299.99755 * 3 2 1 6 6 H 1.48506 * 109.47061 * 59.99325 * 3 2 1 7 7 C 1.38889 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99388 * 180.02562 * 7 2 1 9 9 N 1.37195 * 119.99965 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99793 * 180.02562 * 9 7 2 11 11 O 1.21507 * 119.99943 * 359.97438 * 10 9 7 12 12 O 1.34660 * 119.99855 * 180.02562 * 10 9 7 13 13 C 1.45201 * 116.99725 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.47197 * 180.02562 * 13 12 10 15 15 C 1.38237 * 120.00455 * 0.02562 * 14 13 12 16 16 C 1.38224 * 120.01313 * 179.74163 * 15 14 13 17 17 C 1.38264 * 120.02445 * 0.26351 * 16 15 14 18 18 C 1.38190 * 120.01695 * 0.02562 * 17 16 15 19 19 C 1.38328 * 120.01174 * 180.27757 * 14 13 12 20 20 Cl 1.73603 * 120.01189 * 0.02562 * 19 14 13 21 21 H 0.96999 * 119.99645 * 0.02562 * 1 2 3 22 22 H 0.96991 * 120.00179 * 359.97438 * 9 7 2 23 23 H 1.09001 * 109.47024 * 60.00473 * 13 12 10 24 24 H 1.08995 * 109.47608 * 300.00070 * 13 12 10 25 25 H 1.08002 * 119.99593 * 0.02780 * 15 14 13 26 26 H 1.07996 * 119.98813 * 180.23496 * 16 15 14 27 27 H 1.08004 * 119.98845 * 179.97438 * 17 16 15 28 28 H 1.08000 * 120.00844 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 3.7088 1.3463 0.0006 5 1 1.8900 2.3964 -1.2126 6 1 1.8899 2.3965 1.2125 7 6 2.0091 -1.2029 0.0005 8 1 3.0891 -1.2028 0.0010 9 7 1.3230 -2.3910 0.0005 10 6 1.9969 -3.5582 0.0016 11 8 3.2119 -3.5582 0.0021 12 8 1.3235 -4.7243 0.0011 13 6 2.1143 -5.9421 0.0017 14 6 1.1963 -7.1372 0.0003 15 6 -0.1742 -6.9562 -0.0017 16 6 -1.0163 -8.0522 -0.0084 17 6 -0.4886 -9.3302 -0.0074 18 6 0.8812 -9.5125 0.0007 19 6 1.7247 -8.4156 0.0064 20 17 3.4457 -8.6437 0.0163 21 1 -0.4849 0.8401 -0.0004 22 1 0.3531 -2.3909 0.0005 23 1 2.7424 -5.9670 0.8922 24 1 2.7438 -5.9670 -0.8877 25 1 -0.5870 -5.9582 -0.0028 26 1 -2.0869 -7.9103 -0.0138 27 1 -1.1472 -10.1862 -0.0122 28 1 1.2933 -10.5108 0.0010 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258564652.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:05 Heat of formation + Delta-G solvation = -68.049904 kcal Electronic energy + Delta-G solvation = -15772.277036 eV Core-core repulsion = 12814.058513 eV Total energy + Delta-G solvation = -2958.218523 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.72586 -38.88093 -36.50209 -35.85625 -33.95391 -32.11714 -31.18592 -30.79972 -26.58384 -24.84645 -22.82047 -21.56911 -20.28229 -18.23683 -17.47149 -16.82095 -15.88734 -15.73810 -15.33365 -14.91927 -14.38975 -13.85048 -13.84075 -13.48180 -13.39588 -12.57577 -12.08523 -11.70555 -11.58281 -11.57199 -11.22343 -11.16285 -10.74948 -10.37511 -10.27074 -10.20007 -9.61376 -9.22836 -8.94024 -8.71513 -8.09403 -6.44955 -3.90023 1.03700 1.18842 2.05223 3.15129 3.16487 3.27325 3.39781 3.53631 4.02258 4.23751 4.63830 4.77394 4.91666 5.19760 5.24690 5.32324 5.49687 5.67994 5.73850 5.82399 5.97309 6.10342 6.34278 6.37766 6.72112 7.18358 7.52501 8.03448 8.45622 9.08277 9.41223 9.99942 10.73523 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.038274 B = 0.004489 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.393026 B = 6235.346291 C = 6951.586071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.295 4.295 8 H 0.107 0.893 9 N -0.540 5.540 10 C 0.585 3.415 11 O -0.613 6.613 12 O -0.383 6.383 13 C 0.132 3.868 14 C -0.074 4.074 15 C -0.085 4.085 16 C -0.115 4.115 17 C -0.114 4.114 18 C -0.112 4.112 19 C -0.033 4.033 20 Cl -0.068 7.068 21 H 0.272 0.728 22 H 0.400 0.600 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.146 0.854 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.410 -16.792 -0.008 16.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.763 3.237 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.423 4.423 8 H 0.125 0.875 9 N -0.184 5.184 10 C 0.337 3.663 11 O -0.507 6.507 12 O -0.298 6.298 13 C 0.057 3.943 14 C -0.075 4.075 15 C -0.103 4.103 16 C -0.133 4.133 17 C -0.133 4.133 18 C -0.130 4.130 19 C -0.060 4.060 20 Cl -0.039 7.039 21 H 0.082 0.918 22 H 0.235 0.765 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.163 0.837 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.810 -16.706 -0.007 16.804 hybrid contribution 0.084 0.737 0.001 0.742 sum -1.726 -15.969 -0.006 16.062 Atomic orbital electron populations 1.69669 1.05863 1.28193 1.50361 1.25270 0.95780 0.99588 0.97225 0.85696 0.79563 0.80659 0.77772 1.19140 1.20637 1.20642 1.19702 0.93152 0.80625 1.48869 0.87535 1.40557 1.09469 1.01190 1.67199 1.17941 0.84447 0.80649 0.83247 1.90812 1.12460 1.86614 1.60811 1.86051 1.40593 1.14020 1.89175 1.21269 0.90856 0.78926 1.03271 1.19654 0.95103 0.92265 1.00472 1.21169 0.91667 1.00438 0.97010 1.21322 1.00363 0.92336 0.99311 1.21114 0.94271 0.97616 1.00255 1.20952 0.93154 0.97623 1.01297 1.20637 0.85007 0.93885 1.06448 1.98379 1.11381 1.97298 1.96819 0.91785 0.76532 0.89954 0.89957 0.83654 0.85218 0.85231 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.53 13.05 55.49 0.72 -23.80 15 2 C 0.02 0.62 5.50 -17.46 -0.10 0.52 15 3 Si 0.94 20.89 29.55 -169.99 -5.02 15.86 15 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 15 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 7 C -0.30 -8.27 9.68 -14.91 -0.14 -8.42 15 8 H 0.11 3.09 7.16 -52.49 -0.38 2.71 15 9 N -0.54 -14.26 5.29 -15.38 -0.08 -14.35 15 10 C 0.59 14.81 8.70 54.05 0.47 15.28 15 11 O -0.61 -17.06 15.71 -19.28 -0.30 -17.37 15 12 O -0.38 -8.03 8.74 -40.38 -0.35 -8.39 15 13 C 0.13 2.35 4.84 36.00 0.17 2.53 15 14 C -0.07 -1.10 5.88 -104.59 -0.62 -1.71 15 15 C -0.08 -1.15 9.38 -39.59 -0.37 -1.52 15 16 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 15 17 C -0.11 -1.10 10.05 -39.59 -0.40 -1.49 15 18 C -0.11 -1.18 9.83 -39.55 -0.39 -1.57 15 19 C -0.03 -0.43 6.31 -39.50 -0.25 -0.68 15 20 Cl -0.07 -0.86 27.99 -51.86 -1.45 -2.31 15 21 H 0.27 6.96 8.31 -40.82 -0.34 6.62 15 22 H 0.40 10.23 8.01 -40.82 -0.33 9.90 15 23 H 0.08 1.48 8.13 -51.93 -0.42 1.06 15 24 H 0.08 1.48 8.14 -51.93 -0.42 1.06 15 25 H 0.15 2.08 6.99 -52.49 -0.37 1.71 15 26 H 0.13 1.08 8.06 -52.49 -0.42 0.66 15 27 H 0.13 0.86 8.06 -52.48 -0.42 0.44 15 28 H 0.13 1.10 8.06 -52.49 -0.42 0.68 15 LS Contribution 272.78 15.07 4.11 4.11 Total: -1.00 -30.41 272.78 -6.71 -37.12 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -2.32 Total: 7.82 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -2.02 Total: 1.30 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.64 Total: -38.15 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.66 Total: -25.75 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.45 Total: -2.31 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.41 -6.71 -37.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258564652.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.928 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds