Wall clock time and date at job start Mon Mar 30 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31472 * 1 3 3 Si 1.86797 * 120.00231 * 2 1 4 4 H 1.48504 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46917 * 299.99755 * 3 2 1 6 6 H 1.48506 * 109.47061 * 59.99325 * 3 2 1 7 7 C 1.38889 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99388 * 180.02562 * 7 2 1 9 9 N 1.37195 * 119.99965 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99793 * 180.02562 * 9 7 2 11 11 O 1.21507 * 119.99943 * 359.97438 * 10 9 7 12 12 O 1.34660 * 119.99855 * 180.02562 * 10 9 7 13 13 C 1.45201 * 116.99725 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.47197 * 180.02562 * 13 12 10 15 15 C 1.38237 * 120.00455 * 0.02562 * 14 13 12 16 16 C 1.38224 * 120.01313 * 179.74163 * 15 14 13 17 17 C 1.38264 * 120.02445 * 0.26351 * 16 15 14 18 18 C 1.38190 * 120.01695 * 0.02562 * 17 16 15 19 19 C 1.38328 * 120.01174 * 180.27757 * 14 13 12 20 20 Cl 1.73603 * 120.01189 * 0.02562 * 19 14 13 21 21 H 0.96999 * 119.99645 * 0.02562 * 1 2 3 22 22 H 0.96991 * 120.00179 * 359.97438 * 9 7 2 23 23 H 1.09001 * 109.47024 * 60.00473 * 13 12 10 24 24 H 1.08995 * 109.47608 * 300.00070 * 13 12 10 25 25 H 1.08002 * 119.99593 * 0.02780 * 15 14 13 26 26 H 1.07996 * 119.98813 * 180.23496 * 16 15 14 27 27 H 1.08004 * 119.98845 * 179.97438 * 17 16 15 28 28 H 1.08000 * 120.00844 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 3.7088 1.3463 0.0006 5 1 1.8900 2.3964 -1.2126 6 1 1.8899 2.3965 1.2125 7 6 2.0091 -1.2029 0.0005 8 1 3.0891 -1.2028 0.0010 9 7 1.3230 -2.3910 0.0005 10 6 1.9969 -3.5582 0.0016 11 8 3.2119 -3.5582 0.0021 12 8 1.3235 -4.7243 0.0011 13 6 2.1143 -5.9421 0.0017 14 6 1.1963 -7.1372 0.0003 15 6 -0.1742 -6.9562 -0.0017 16 6 -1.0163 -8.0522 -0.0084 17 6 -0.4886 -9.3302 -0.0074 18 6 0.8812 -9.5125 0.0007 19 6 1.7247 -8.4156 0.0064 20 17 3.4457 -8.6437 0.0163 21 1 -0.4849 0.8401 -0.0004 22 1 0.3531 -2.3909 0.0005 23 1 2.7424 -5.9670 0.8922 24 1 2.7438 -5.9670 -0.8877 25 1 -0.5870 -5.9582 -0.0028 26 1 -2.0869 -7.9103 -0.0138 27 1 -1.1472 -10.1862 -0.0122 28 1 1.2933 -10.5108 0.0010 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258564652.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:05 Heat of formation + Delta-G solvation = -87.042932 kcal Electronic energy + Delta-G solvation = -15773.100636 eV Core-core repulsion = 12814.058513 eV Total energy + Delta-G solvation = -2959.042123 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.28368 -40.23715 -37.70364 -37.46052 -36.04170 -33.59830 -32.93808 -31.71589 -28.03850 -26.72890 -23.86238 -22.72805 -22.01351 -20.31604 -19.11257 -18.15340 -17.47699 -17.46638 -16.51171 -16.31083 -15.94112 -15.36469 -15.24777 -14.77741 -14.72377 -14.00478 -13.57136 -13.49323 -12.97173 -12.66529 -12.53618 -12.47603 -12.25463 -12.08672 -11.89519 -11.76161 -11.63132 -11.32665 -10.18737 -9.89732 -9.69640 -8.51517 -6.05518 0.09427 0.26026 1.07156 1.36862 1.39252 1.50534 1.66926 2.01351 2.37969 2.61729 3.15194 3.45844 3.79416 4.02513 4.06405 4.19523 4.24717 4.39434 4.48251 4.65349 4.95449 5.14509 5.22561 5.37211 5.43235 5.55170 5.83869 5.95717 6.38214 6.98349 7.32750 7.95451 8.67401 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.038274 B = 0.004489 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.393026 B = 6235.346291 C = 6951.586071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 1.005 2.995 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.331 4.331 8 H 0.089 0.911 9 N -0.545 5.545 10 C 0.587 3.413 11 O -0.643 6.643 12 O -0.373 6.373 13 C 0.132 3.868 14 C -0.099 4.099 15 C -0.104 4.104 16 C -0.110 4.110 17 C -0.099 4.099 18 C -0.107 4.107 19 C -0.043 4.043 20 Cl -0.073 7.073 21 H 0.281 0.719 22 H 0.402 0.598 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.129 0.871 26 H 0.158 0.842 27 H 0.171 0.829 28 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.616 -17.892 -0.014 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.828 3.172 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.459 4.459 8 H 0.107 0.893 9 N -0.190 5.190 10 C 0.339 3.661 11 O -0.539 6.539 12 O -0.288 6.288 13 C 0.058 3.942 14 C -0.100 4.100 15 C -0.122 4.122 16 C -0.127 4.127 17 C -0.116 4.116 18 C -0.125 4.125 19 C -0.069 4.069 20 Cl -0.044 7.044 21 H 0.090 0.910 22 H 0.237 0.763 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.147 0.853 26 H 0.175 0.825 27 H 0.189 0.811 28 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.047 -17.837 -0.013 18.096 hybrid contribution 0.372 0.945 0.003 1.016 sum -2.675 -16.892 -0.011 17.103 Atomic orbital electron populations 1.69738 1.06988 1.29646 1.49589 1.26175 0.96714 1.02459 0.95725 0.84700 0.77969 0.76085 0.78483 1.19375 1.19348 1.19360 1.19740 0.92732 0.81893 1.51497 0.89325 1.40567 1.09473 1.01436 1.67486 1.18025 0.84099 0.81488 0.82455 1.90773 1.13827 1.87345 1.61980 1.86066 1.40378 1.13762 1.88557 1.21417 0.91609 0.78685 1.02528 1.19465 0.95201 0.91554 1.03736 1.21173 0.91569 1.01000 0.98497 1.21641 1.01414 0.91890 0.97799 1.21605 0.94275 0.98342 0.97414 1.21351 0.93473 0.97943 0.99740 1.20783 0.85150 0.93881 1.07108 1.98375 1.11941 1.97231 1.96881 0.90969 0.76330 0.90864 0.90864 0.85275 0.82460 0.81115 0.82195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.83 13.05 21.66 0.28 -49.55 15 2 C -0.01 -0.57 5.50 84.90 0.47 -0.10 15 3 Si 1.01 42.38 29.55 68.60 2.03 44.41 15 4 H -0.27 -11.38 7.11 99.48 0.71 -10.68 15 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 15 6 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 7 C -0.33 -18.98 9.68 84.01 0.81 -18.17 15 8 H 0.09 5.32 7.16 -2.91 -0.02 5.30 15 9 N -0.55 -29.74 5.29 -432.97 -2.29 -32.03 15 10 C 0.59 30.88 8.70 129.79 1.13 32.01 15 11 O -0.64 -37.25 15.71 19.82 0.31 -36.94 15 12 O -0.37 -16.33 8.74 -55.70 -0.49 -16.81 15 13 C 0.13 4.93 4.84 71.24 0.34 5.27 15 14 C -0.10 -2.94 5.88 -19.84 -0.12 -3.06 15 15 C -0.10 -2.79 9.38 22.27 0.21 -2.58 15 16 C -0.11 -2.05 10.05 22.27 0.22 -1.82 15 17 C -0.10 -1.48 10.05 22.26 0.22 -1.26 15 18 C -0.11 -1.93 9.83 22.29 0.22 -1.71 15 19 C -0.04 -1.07 6.31 22.32 0.14 -0.92 15 20 Cl -0.07 -1.85 27.99 -2.72 -0.08 -1.92 15 21 H 0.28 14.06 8.31 -92.71 -0.77 13.29 15 22 H 0.40 21.18 8.01 -92.72 -0.74 20.43 15 23 H 0.07 2.79 8.13 -2.39 -0.02 2.77 15 24 H 0.07 2.79 8.14 -2.39 -0.02 2.77 15 25 H 0.13 3.80 6.99 -2.91 -0.02 3.78 15 26 H 0.16 2.04 8.06 -2.91 -0.02 2.02 15 27 H 0.17 1.24 8.06 -2.91 -0.02 1.22 15 28 H 0.16 2.01 8.06 -2.91 -0.02 1.99 15 Total: -1.00 -66.33 272.78 3.88 -62.46 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.46 Total: 22.75 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 3.65 Total: 7.64 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -2.01 Total: -81.58 kcal Atomic # 8 Polarization: -53.58 SS G_CDS: -0.18 Total: -53.75 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.08 Total: -1.92 kcal Total: -66.33 3.88 -62.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258564652.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.588 kcal (2) G-P(sol) polarization free energy of solvation -66.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds