Wall clock time and date at job start Mon Mar 30 2020 06:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 119.99674 * 2 1 4 4 C 1.50697 * 109.47166 * 269.99846 * 3 2 1 5 5 H 1.07999 * 120.00392 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00173 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99733 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00195 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47310 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47048 * 119.99876 * 8 6 4 11 11 H 1.48496 * 109.47200 * 239.99796 * 8 6 4 12 12 C 1.34779 * 119.99720 * 180.02562 * 2 1 3 13 13 O 1.21513 * 119.99692 * 179.97438 * 12 2 1 14 14 O 1.34631 * 120.00158 * 359.97438 * 12 2 1 15 15 C 1.45208 * 116.99596 * 179.97438 * 14 12 2 16 16 C 1.50702 * 109.46874 * 180.02562 * 15 14 12 17 17 C 1.33381 * 125.20534 * 90.00176 * 16 15 14 18 18 C 1.38427 * 114.92374 * 180.02562 * 17 16 15 19 19 C 1.33387 * 114.91991 * 0.25034 * 18 17 16 20 20 S 1.75886 * 109.59194 * 359.63459 * 19 18 17 21 21 H 1.08996 * 109.47119 * 269.99442 * 1 2 3 22 22 H 1.08998 * 109.47144 * 30.00099 * 1 2 3 23 23 H 1.08999 * 109.46674 * 149.99929 * 1 2 3 24 24 H 1.09000 * 109.47264 * 30.00347 * 3 2 1 25 25 H 1.09008 * 109.46879 * 150.00415 * 3 2 1 26 26 H 0.96998 * 120.00140 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.46880 * 60.00561 * 15 14 12 28 28 H 1.08995 * 109.47409 * 300.00523 * 15 14 12 29 29 H 1.08001 * 122.53741 * 0.05729 * 17 16 15 30 30 H 1.08002 * 122.53759 * 179.97438 * 18 17 16 31 31 H 1.08002 * 125.20431 * 179.75072 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5540 3.6176 -0.6731 8 14 3.4375 3.4171 -3.4339 9 1 2.8597 2.4171 -4.3673 10 1 2.8004 4.7382 -3.6665 11 1 4.9000 3.5248 -3.6679 12 6 2.1389 -1.1673 -0.0005 13 8 3.3540 -1.1672 -0.0010 14 8 1.4657 -2.3332 -0.0005 15 6 2.2566 -3.5510 -0.0017 16 6 1.3386 -4.7461 -0.0021 17 6 0.8698 -5.3552 -1.0922 18 6 0.0397 -6.4352 -0.8456 19 6 -0.1697 -6.6999 0.4449 20 16 0.7208 -5.5506 1.4348 21 1 -0.3633 -0.0001 1.0276 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3632 -0.8900 -0.5139 24 1 1.6084 2.0283 0.5139 25 1 3.1500 1.1384 0.5138 26 1 4.0315 4.4432 -0.8503 27 1 2.8860 -3.5762 0.8879 28 1 2.8848 -3.5754 -0.8921 29 1 1.1193 -5.0307 -2.0916 30 1 -0.4081 -7.0165 -1.6380 31 1 -0.7896 -7.4989 0.8240 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258605062.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:28 Heat of formation + Delta-G solvation = -41.613135 kcal Electronic energy + Delta-G solvation = -16186.926108 eV Core-core repulsion = 13367.730770 eV Total energy + Delta-G solvation = -2819.195338 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.77943 -37.99632 -36.22544 -34.75312 -32.60868 -31.13856 -27.87870 -26.57554 -25.55604 -23.43551 -22.69160 -19.85192 -19.42767 -17.57427 -17.17438 -16.63917 -16.15437 -15.69291 -15.41997 -14.66266 -13.83943 -13.63342 -13.27255 -13.01857 -12.83556 -12.62228 -12.15863 -11.88701 -11.85466 -11.76810 -11.22575 -10.94207 -10.87358 -10.62325 -10.22849 -10.18131 -9.70464 -9.59198 -8.93431 -8.61438 -8.46053 -7.75386 -6.06915 -4.11796 0.72484 1.45730 1.84711 2.46246 3.09699 3.29590 3.37012 3.42008 3.63897 4.40597 4.52435 4.85395 4.93926 5.11891 5.27682 5.37134 5.45666 5.51735 5.84576 5.95222 6.03128 6.09900 6.30054 6.30534 6.60796 7.07348 7.40803 7.46052 7.89285 8.18133 8.32876 8.87972 9.14298 9.53679 11.01252 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.041425 B = 0.004293 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.760810 B = 6519.979347 C = 6710.804542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.580 5.580 3 C 0.258 3.742 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.639 3.361 13 O -0.571 6.571 14 O -0.374 6.374 15 C 0.159 3.841 16 C -0.182 4.182 17 C -0.114 4.114 18 C -0.138 4.138 19 C -0.212 4.212 20 S 0.117 5.883 21 H 0.044 0.956 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.041 0.959 25 H 0.047 0.953 26 H 0.264 0.736 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.572 -18.083 2.315 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.319 5.319 3 C 0.140 3.860 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.392 3.608 13 O -0.460 6.460 14 O -0.289 6.289 15 C 0.082 3.918 16 C -0.299 4.299 17 C -0.145 4.145 18 C -0.168 4.168 19 C -0.348 4.348 20 S 0.381 5.619 21 H 0.063 0.937 22 H 0.093 0.907 23 H 0.081 0.919 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.161 0.839 30 H 0.159 0.841 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.926 -17.738 3.933 19.823 hybrid contribution 0.010 0.105 -2.492 2.494 sum -7.916 -17.634 1.441 19.383 Atomic orbital electron populations 1.21594 0.80386 1.02768 1.00645 1.47206 1.06652 1.04312 1.73766 1.19408 0.92480 0.76230 0.97869 1.21494 1.36637 1.06451 0.92263 0.92228 1.24931 0.95236 0.96273 0.97608 1.69939 1.38296 1.14372 1.30721 0.86403 0.78084 0.78320 0.84391 1.19777 1.20896 1.20829 1.18118 0.84298 0.80784 0.77586 1.90959 1.12198 1.86508 1.56294 1.86267 1.40859 1.13798 1.88020 1.20905 0.89720 0.77450 1.03759 1.24190 1.07207 1.02260 0.96237 1.20255 0.98300 0.96348 0.99599 1.20174 1.01024 0.99108 0.96534 1.25710 1.06875 1.05167 0.97041 1.84346 1.43727 1.24493 1.09295 0.93726 0.90685 0.91903 0.94111 0.93513 0.92670 0.90367 0.89368 0.83871 0.84107 0.81800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.58 10.44 59.85 0.63 2.21 16 2 N -0.58 -13.16 2.86 -188.81 -0.54 -13.70 16 3 C 0.26 6.84 5.16 -5.20 -0.03 6.82 16 4 C -0.53 -15.14 9.39 -34.44 -0.32 -15.47 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.64 14.53 8.39 54.06 0.45 14.98 16 13 O -0.57 -14.83 15.71 -19.28 -0.30 -15.13 16 14 O -0.37 -7.00 9.03 -40.30 -0.36 -7.36 16 15 C 0.16 2.44 5.96 36.01 0.21 2.66 16 16 C -0.18 -2.35 6.15 -36.00 -0.22 -2.57 16 17 C -0.11 -1.30 10.05 -41.21 -0.41 -1.71 16 18 C -0.14 -1.32 10.18 -41.21 -0.42 -1.74 16 19 C -0.21 -1.94 11.23 29.04 0.33 -1.62 16 20 S 0.12 1.29 23.33 -107.50 -2.51 -1.22 16 21 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 23 H 0.06 1.01 7.37 -51.93 -0.38 0.63 16 24 H 0.04 1.07 8.07 -51.93 -0.42 0.66 16 25 H 0.05 1.38 7.42 -51.92 -0.39 0.99 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 293.13 15.07 4.42 4.42 Total: -1.00 -32.73 293.13 -7.15 -39.88 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -3.69 Total: -3.21 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 0.12 Total: 5.22 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.20 Total: -39.44 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.67 Total: -22.49 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.51 Total: -1.22 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.73 -7.15 -39.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258605062.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.734 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds