Wall clock time and date at job start Mon Mar 30 2020 06:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 119.99674 * 2 1 4 4 C 1.50697 * 109.47166 * 269.99846 * 3 2 1 5 5 H 1.07999 * 120.00392 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00173 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99733 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00195 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47310 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47048 * 119.99876 * 8 6 4 11 11 H 1.48496 * 109.47200 * 239.99796 * 8 6 4 12 12 C 1.34779 * 119.99720 * 180.02562 * 2 1 3 13 13 O 1.21513 * 119.99692 * 179.97438 * 12 2 1 14 14 O 1.34631 * 120.00158 * 359.97438 * 12 2 1 15 15 C 1.45208 * 116.99596 * 179.97438 * 14 12 2 16 16 C 1.50702 * 109.46874 * 180.02562 * 15 14 12 17 17 C 1.33381 * 125.20534 * 90.00176 * 16 15 14 18 18 C 1.38427 * 114.92374 * 180.02562 * 17 16 15 19 19 C 1.33387 * 114.91991 * 0.25034 * 18 17 16 20 20 S 1.75886 * 109.59194 * 359.63459 * 19 18 17 21 21 H 1.08996 * 109.47119 * 269.99442 * 1 2 3 22 22 H 1.08998 * 109.47144 * 30.00099 * 1 2 3 23 23 H 1.08999 * 109.46674 * 149.99929 * 1 2 3 24 24 H 1.09000 * 109.47264 * 30.00347 * 3 2 1 25 25 H 1.09008 * 109.46879 * 150.00415 * 3 2 1 26 26 H 0.96998 * 120.00140 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.46880 * 60.00561 * 15 14 12 28 28 H 1.08995 * 109.47409 * 300.00523 * 15 14 12 29 29 H 1.08001 * 122.53741 * 0.05729 * 17 16 15 30 30 H 1.08002 * 122.53759 * 179.97438 * 18 17 16 31 31 H 1.08002 * 125.20431 * 179.75072 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5540 3.6176 -0.6731 8 14 3.4375 3.4171 -3.4339 9 1 2.8597 2.4171 -4.3673 10 1 2.8004 4.7382 -3.6665 11 1 4.9000 3.5248 -3.6679 12 6 2.1389 -1.1673 -0.0005 13 8 3.3540 -1.1672 -0.0010 14 8 1.4657 -2.3332 -0.0005 15 6 2.2566 -3.5510 -0.0017 16 6 1.3386 -4.7461 -0.0021 17 6 0.8698 -5.3552 -1.0922 18 6 0.0397 -6.4352 -0.8456 19 6 -0.1697 -6.6999 0.4449 20 16 0.7208 -5.5506 1.4348 21 1 -0.3633 -0.0001 1.0276 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3632 -0.8900 -0.5139 24 1 1.6084 2.0283 0.5139 25 1 3.1500 1.1384 0.5138 26 1 4.0315 4.4432 -0.8503 27 1 2.8860 -3.5762 0.8879 28 1 2.8848 -3.5754 -0.8921 29 1 1.1193 -5.0307 -2.0916 30 1 -0.4081 -7.0165 -1.6380 31 1 -0.7896 -7.4989 0.8240 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258605062.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:28 Heat of formation + Delta-G solvation = -61.879689 kcal Electronic energy + Delta-G solvation = -16187.804932 eV Core-core repulsion = 13367.730770 eV Total energy + Delta-G solvation = -2820.074162 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.46557 -38.96285 -37.77845 -36.60579 -34.73153 -32.20428 -29.85661 -27.80513 -27.05867 -25.18184 -23.87971 -21.58379 -20.27595 -19.00789 -18.77371 -18.55335 -17.62639 -17.30845 -16.62430 -16.36063 -15.44065 -15.19600 -14.60569 -14.28050 -14.02014 -13.87665 -13.60654 -13.45202 -13.17959 -13.09075 -13.01535 -12.82089 -12.56962 -12.24406 -11.82663 -11.71615 -11.61708 -11.49701 -10.65289 -9.80685 -9.61539 -9.44963 -8.24214 -6.38866 -0.16745 0.59806 1.03829 1.29078 1.38757 1.40936 1.53290 1.83005 1.89006 2.39001 3.05486 3.12958 3.69018 3.95680 4.21492 4.21597 4.40766 4.59625 4.65966 4.68899 4.82999 4.94384 5.09140 5.13982 5.27025 5.33660 5.49034 5.50250 5.74543 6.00619 6.52986 6.68678 7.25200 7.41489 8.83639 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.041425 B = 0.004293 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.760810 B = 6519.979347 C = 6710.804542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.588 5.588 3 C 0.272 3.728 4 C -0.549 4.549 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.926 5.926 8 Si 0.970 3.030 9 H -0.269 1.269 10 H -0.268 1.268 11 H -0.280 1.280 12 C 0.639 3.361 13 O -0.613 6.613 14 O -0.363 6.363 15 C 0.156 3.844 16 C -0.217 4.217 17 C -0.105 4.105 18 C -0.147 4.147 19 C -0.192 4.192 20 S 0.106 5.894 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.040 0.960 25 H 0.007 0.993 26 H 0.269 0.731 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.150 0.850 30 H 0.171 0.829 31 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.290 -19.526 1.205 22.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.326 5.326 3 C 0.153 3.847 4 C -0.587 4.587 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.565 5.565 8 Si 0.795 3.205 9 H -0.193 1.193 10 H -0.193 1.193 11 H -0.206 1.206 12 C 0.393 3.607 13 O -0.505 6.505 14 O -0.278 6.278 15 C 0.080 3.920 16 C -0.334 4.334 17 C -0.138 4.138 18 C -0.177 4.177 19 C -0.327 4.327 20 S 0.370 5.630 21 H 0.087 0.913 22 H 0.096 0.904 23 H 0.098 0.902 24 H 0.058 0.942 25 H 0.025 0.975 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.167 0.833 30 H 0.188 0.812 31 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -9.693 -19.212 2.834 21.704 hybrid contribution 0.487 0.418 -2.101 2.197 sum -9.206 -18.794 0.732 20.940 Atomic orbital electron populations 1.21832 0.77197 1.03776 1.02589 1.47148 1.08580 1.03320 1.73590 1.18944 0.91189 0.77912 0.96682 1.21716 1.37308 1.06869 0.92821 0.92850 1.25830 0.94654 0.96185 1.02132 1.70042 1.38643 1.14839 1.32991 0.85326 0.77935 0.78401 0.78882 1.19286 1.19250 1.20605 1.18196 0.83819 0.81766 0.76922 1.90919 1.14174 1.87354 1.58059 1.86278 1.40681 1.13473 1.87359 1.21075 0.90435 0.76970 1.03525 1.23984 1.09180 1.02319 0.97870 1.20551 0.97410 0.96309 0.99485 1.20443 1.00820 0.98818 0.97587 1.26146 1.05536 1.04588 0.96464 1.84382 1.44260 1.25210 1.09116 0.91277 0.90367 0.90152 0.94226 0.97487 0.92191 0.90729 0.89712 0.83276 0.81204 0.78573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.00 10.44 127.77 1.33 4.33 16 2 N -0.59 -26.98 2.86 -981.66 -2.80 -29.78 16 3 C 0.27 14.89 5.16 85.63 0.44 15.33 16 4 C -0.55 -31.84 9.39 25.60 0.24 -31.60 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.66 5.46 84.66 0.46 1.12 16 7 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 8 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 C 0.64 29.68 8.39 129.79 1.09 30.77 16 13 O -0.61 -33.13 15.71 19.80 0.31 -32.82 16 14 O -0.36 -13.65 9.03 -55.40 -0.50 -14.15 16 15 C 0.16 4.88 5.96 71.24 0.42 5.31 16 16 C -0.22 -5.42 6.15 24.59 0.15 -5.27 16 17 C -0.11 -2.21 10.05 21.22 0.21 -2.00 16 18 C -0.15 -2.33 10.18 21.22 0.22 -2.11 16 19 C -0.19 -2.86 11.23 66.72 0.75 -2.11 16 20 S 0.11 2.18 23.33 -56.49 -1.32 0.87 16 21 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.08 2.61 8.07 -2.39 -0.02 2.59 16 23 H 0.08 2.45 7.37 -2.39 -0.02 2.43 16 24 H 0.04 2.15 8.07 -2.39 -0.02 2.13 16 25 H 0.01 0.43 7.42 -2.38 -0.02 0.42 16 26 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 27 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 30 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.20 1.62 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -71.34 293.13 4.45 -66.90 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: 1.13 Total: 3.60 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 5.32 Total: 13.77 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -2.52 Total: -84.92 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -0.19 Total: -46.96 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -1.32 Total: 0.87 kcal Total: -71.34 4.45 -66.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258605062.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.017 kcal (2) G-P(sol) polarization free energy of solvation -71.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds