Wall clock time and date at job start Mon Mar 30 2020 06:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35969 * 117.00174 * 2 1 4 4 C 1.38510 * 120.08073 * 359.97438 * 3 2 1 5 5 C 1.38265 * 120.04391 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.89156 * 180.02562 * 5 4 3 7 7 C 1.38453 * 120.21412 * 0.29012 * 5 4 3 8 8 Cl 1.73602 * 119.91879 * 179.70551 * 7 5 4 9 9 C 1.38207 * 120.16022 * 359.45663 * 7 5 4 10 10 C 1.50704 * 120.02124 * 180.27225 * 9 7 5 11 11 C 1.38957 * 119.95483 * 0.52443 * 9 7 5 12 12 N 1.39402 * 120.10487 * 179.77217 * 11 9 7 13 13 C 1.36812 * 120.00245 * 95.76618 * 12 11 9 14 14 H 1.08003 * 119.99656 * 355.57576 * 13 12 11 15 15 C 1.38762 * 119.99855 * 175.57892 * 13 12 11 16 16 N 1.31609 * 120.00312 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99653 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47146 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47306 * 120.00094 * 17 15 13 20 20 H 1.48505 * 109.47109 * 239.99657 * 17 15 13 21 21 H 1.09002 * 109.47330 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46935 * 300.00450 * 1 2 3 23 23 H 1.09003 * 109.46980 * 60.00116 * 1 2 3 24 24 H 1.08005 * 119.97651 * 0.02562 * 4 3 2 25 25 H 1.09000 * 109.47330 * 89.99713 * 6 5 4 26 26 H 1.08996 * 109.47300 * 329.99806 * 6 5 4 27 27 H 1.09005 * 109.47012 * 209.99631 * 6 5 4 28 28 H 1.09004 * 109.46934 * 270.25357 * 10 9 7 29 29 H 1.08999 * 109.47371 * 30.24464 * 10 9 7 30 30 H 1.08995 * 109.47098 * 150.25377 * 10 9 7 31 31 H 0.97003 * 120.00128 * 275.76349 * 12 11 9 32 32 H 0.97003 * 120.00034 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2936 2.3742 -0.0005 5 6 1.9221 3.6057 -0.0011 6 6 1.0998 4.8686 -0.0011 7 6 3.3045 3.6824 -0.0071 8 17 4.0857 5.2328 -0.0155 9 6 4.0641 2.5278 -0.0014 10 6 5.5686 2.6150 -0.0018 11 6 3.4395 1.2865 -0.0004 12 7 4.2026 0.1198 0.0006 13 6 4.4773 -0.5169 1.1799 14 1 4.1644 -0.0783 2.1160 15 6 5.1579 -1.7261 1.1734 16 7 5.5387 -2.2608 0.0327 17 14 5.5323 -2.5958 2.7836 18 1 5.0011 -1.7935 3.9147 19 1 4.8922 -3.9358 2.7830 20 1 7.0018 -2.7493 2.9333 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.2150 2.3188 -0.0005 25 1 0.9019 5.1734 1.0266 26 1 0.1556 4.6874 -0.5145 27 1 1.6472 5.6586 -0.5153 28 1 5.9310 2.6354 -1.0296 29 1 5.8800 3.5248 0.5113 30 1 5.9829 1.7478 0.5124 31 1 4.5388 -0.2406 -0.8349 32 1 6.0142 -3.1063 0.0281 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258868256.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:30 Heat of formation + Delta-G solvation = -31.147240 kcal Electronic energy + Delta-G solvation = -16917.103899 eV Core-core repulsion = 14096.318690 eV Total energy + Delta-G solvation = -2820.785209 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.20334 -38.85175 -37.34897 -36.46993 -34.21483 -32.52646 -31.12957 -28.48605 -27.98354 -27.13915 -25.06881 -22.57313 -21.49435 -19.40896 -18.39657 -17.78347 -17.57558 -16.53976 -16.22043 -15.52770 -15.18740 -14.94637 -14.88787 -14.56161 -13.95978 -13.73099 -13.21394 -13.12548 -12.90655 -12.84733 -12.77425 -12.62647 -12.43728 -12.25750 -12.11823 -11.85904 -11.43101 -11.24702 -11.15061 -9.44750 -9.23930 -8.80556 -7.97001 -5.31717 0.34962 0.38511 1.29542 1.45802 1.46519 1.56600 2.50295 2.55897 2.71346 3.37138 3.71483 3.86466 3.99981 4.21872 4.37894 4.43357 4.49442 4.66001 4.70624 4.77689 4.80500 4.83371 4.87881 5.03769 5.31960 5.38721 5.42686 5.48788 5.56788 5.85041 6.24835 6.65337 7.27579 8.09590 8.19860 9.24435 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021607 B = 0.007593 C = 0.006089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.543823 B = 3686.601261 C = 4597.386437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.105 3.895 4 C -0.200 4.200 5 C -0.053 4.053 6 C -0.109 4.109 7 C -0.078 4.078 8 Cl -0.066 7.066 9 C -0.068 4.068 10 C -0.100 4.100 11 C 0.131 3.869 12 N -0.674 5.674 13 C -0.231 4.231 14 H 0.065 0.935 15 C -0.061 4.061 16 N -0.962 5.962 17 Si 0.971 3.029 18 H -0.270 1.270 19 H -0.291 1.291 20 H -0.288 1.288 21 H 0.105 0.895 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.161 0.839 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.380 0.620 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.315 13.652 -0.482 17.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.239 6.239 3 C 0.056 3.944 4 C -0.219 4.219 5 C -0.054 4.054 6 C -0.165 4.165 7 C -0.105 4.105 8 Cl -0.037 7.037 9 C -0.072 4.072 10 C -0.157 4.157 11 C 0.034 3.966 12 N -0.310 5.310 13 C -0.361 4.361 14 H 0.083 0.917 15 C -0.254 4.254 16 N -0.612 5.612 17 Si 0.800 3.200 18 H -0.194 1.194 19 H -0.218 1.218 20 H -0.215 1.215 21 H 0.124 0.876 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.178 0.822 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.215 0.785 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.143 13.498 -0.298 16.887 hybrid contribution 0.456 -0.939 0.354 1.102 sum -9.687 12.559 0.057 15.861 Atomic orbital electron populations 1.23322 0.77374 1.04885 1.02218 1.86295 1.22647 1.26887 1.88058 1.20327 0.92752 0.85134 0.96205 1.21128 1.00799 0.90012 1.09990 1.19767 0.91297 0.96520 0.97815 1.20872 0.99380 0.92628 1.03665 1.20471 0.92407 0.85520 1.12107 1.98285 1.80981 1.27216 1.97196 1.20317 0.97341 0.90784 0.98732 1.20607 0.90125 1.02626 1.02337 1.17097 0.87672 0.88084 1.03783 1.39509 1.60027 1.24865 1.06563 1.19310 1.29358 1.01524 0.85933 0.91676 1.25494 1.01695 0.98226 0.99999 1.69806 1.45263 1.20266 1.25836 0.85117 0.77251 0.78184 0.79447 1.19449 1.21780 1.21505 0.87636 0.91593 0.91181 0.82165 0.89729 0.89347 0.90648 0.91059 0.90289 0.92396 0.78494 0.93716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.54 16 2 O -0.33 -13.30 10.24 -93.20 -0.95 -14.25 16 3 C 0.10 4.17 6.71 22.65 0.15 4.32 16 4 C -0.20 -6.06 8.68 22.34 0.19 -5.87 16 5 C -0.05 -1.51 5.89 -19.81 -0.12 -1.63 16 6 C -0.11 -2.13 9.61 71.24 0.68 -1.45 16 7 C -0.08 -2.55 6.31 22.31 0.14 -2.41 16 8 Cl -0.07 -1.79 25.60 -2.72 -0.07 -1.86 16 9 C -0.07 -2.69 5.90 -19.70 -0.12 -2.81 16 10 C -0.10 -3.78 9.36 71.24 0.67 -3.12 16 11 C 0.13 5.93 5.86 38.42 0.23 6.16 16 12 N -0.67 -35.83 4.03 -184.01 -0.74 -36.57 16 13 C -0.23 -13.18 9.63 84.04 0.81 -12.38 16 14 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 15 C -0.06 -3.55 5.50 84.85 0.47 -3.08 16 16 N -0.96 -58.97 13.06 21.64 0.28 -58.69 16 17 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 21 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 22 H 0.07 1.46 7.66 -2.39 -0.02 1.44 16 23 H 0.07 1.49 7.66 -2.39 -0.02 1.47 16 24 H 0.16 3.64 6.30 -2.91 -0.02 3.62 16 25 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16 27 H 0.07 1.43 6.88 -2.38 -0.02 1.42 16 28 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.08 2.59 6.91 -2.39 -0.02 2.57 16 30 H 0.06 2.55 7.23 -2.39 -0.02 2.54 16 31 H 0.38 21.68 8.02 -92.71 -0.74 20.94 16 32 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -66.76 286.37 5.17 -61.59 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.40 Total: 21.76 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 4.22 Total: -20.71 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -0.46 Total: -95.26 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.95 Total: -14.25 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.07 Total: -1.86 kcal Total: -66.76 5.17 -61.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258868256.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.444 kcal (2) G-P(sol) polarization free energy of solvation -66.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds