Wall clock time and date at job start Mon Mar 30 2020 06:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35924 * 116.99661 * 2 1 4 4 C 1.38744 * 120.04108 * 0.27591 * 3 2 1 5 5 C 1.38126 * 119.95468 * 180.22904 * 4 3 2 6 6 C 1.50703 * 119.98109 * 179.79278 * 5 4 3 7 7 C 1.38387 * 120.04283 * 359.77041 * 5 4 3 8 8 Cl 1.73598 * 119.96027 * 180.02562 * 7 5 4 9 9 C 1.38342 * 120.08896 * 359.97400 * 7 5 4 10 10 C 1.38174 * 120.03701 * 0.02562 * 9 7 5 11 11 C 1.50703 * 120.01927 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47064 * 259.99741 * 11 10 9 13 13 C 1.36936 * 119.99992 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99834 * 0.02562 * 13 12 11 15 15 C 1.38801 * 120.00093 * 180.02562 * 13 12 11 16 16 N 1.31619 * 120.00176 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00265 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46951 * 89.99797 * 17 15 13 19 19 H 1.48500 * 109.47313 * 210.00112 * 17 15 13 20 20 H 1.48501 * 109.46991 * 330.00153 * 17 15 13 21 21 H 1.09007 * 109.46610 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47132 * 299.99821 * 1 2 3 23 23 H 1.09001 * 109.47244 * 60.00210 * 1 2 3 24 24 H 1.07995 * 120.02463 * 359.97438 * 4 3 2 25 25 H 1.09004 * 109.47083 * 269.98104 * 6 5 4 26 26 H 1.09005 * 109.46755 * 29.97598 * 6 5 4 27 27 H 1.09001 * 109.47257 * 149.97767 * 6 5 4 28 28 H 1.07991 * 119.98684 * 180.02562 * 9 7 5 29 29 H 1.09002 * 109.47152 * 139.99824 * 11 10 9 30 30 H 1.09001 * 109.46980 * 19.99925 * 11 10 9 31 31 H 0.96996 * 119.99606 * 0.02562 * 12 11 10 32 32 H 0.97001 * 120.00803 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2912 2.3752 0.0058 5 6 1.9200 3.6050 0.0010 6 6 1.1006 4.8698 0.0025 7 6 3.3020 3.6765 -0.0048 8 17 4.0901 5.2233 -0.0101 9 6 4.0565 2.5169 -0.0052 10 6 3.4310 1.2848 -0.0004 11 6 4.2533 0.0219 -0.0015 12 7 4.3132 -0.5207 -1.3610 13 6 5.0108 -1.6728 -1.6083 14 1 5.5165 -2.1817 -0.8009 15 6 5.0679 -2.1867 -2.8964 16 7 4.4520 -1.5663 -3.8804 17 14 6.0189 -3.7587 -3.2337 18 1 5.1163 -4.9271 -3.0743 19 1 6.5495 -3.7285 -4.6203 20 1 7.1470 -3.8703 -2.2743 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 0.2126 2.3199 0.0099 25 1 0.8988 5.1733 -1.0248 26 1 0.1582 4.6915 0.5205 27 1 1.6521 5.6594 0.5130 28 1 5.1348 2.5746 -0.0093 29 1 3.7946 -0.7109 0.6623 30 1 5.2623 0.2450 0.3455 31 1 3.8593 -0.0634 -2.0860 32 1 4.4922 -1.9251 -4.7807 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258896949.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:33 Heat of formation + Delta-G solvation = -13.562846 kcal Electronic energy + Delta-G solvation = -16495.328850 eV Core-core repulsion = 13675.306157 eV Total energy + Delta-G solvation = -2820.022693 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.13358 -37.64732 -36.10026 -34.88291 -32.77490 -30.60966 -29.75005 -27.93218 -26.97192 -24.41968 -22.39895 -22.14294 -20.69821 -17.46076 -17.06709 -16.40945 -15.74973 -15.52938 -14.51733 -14.26090 -13.97582 -13.89612 -13.30704 -13.18107 -12.88974 -12.31961 -12.27506 -11.95701 -11.77041 -11.60045 -11.48104 -11.06167 -10.88677 -10.76246 -10.39638 -10.33367 -9.99568 -9.69868 -8.82710 -8.62415 -7.79918 -6.84152 -5.68896 -2.97290 1.38731 1.45030 2.34312 3.48155 3.52025 3.52785 3.54783 3.77112 4.66889 4.74527 4.84909 5.09771 5.20484 5.29294 5.37788 5.55996 5.58921 5.62515 5.65232 5.70618 5.80185 6.08794 6.16656 6.27001 6.35416 6.43589 6.62401 6.83681 6.99358 7.61093 7.75667 8.48836 9.60392 10.17777 10.53999 11.53976 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023833 B = 0.005780 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.578602 B = 4843.262255 C = 5601.785170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.291 6.291 3 C 0.154 3.846 4 C -0.207 4.207 5 C -0.045 4.045 6 C -0.116 4.116 7 C -0.077 4.077 8 Cl -0.081 7.081 9 C -0.055 4.055 10 C -0.104 4.104 11 C 0.198 3.802 12 N -0.723 5.723 13 C -0.235 4.235 14 H 0.071 0.929 15 C -0.014 4.014 16 N -0.933 5.933 17 Si 0.907 3.093 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 H 0.099 0.901 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.133 0.867 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.139 0.861 29 H 0.034 0.966 30 H 0.028 0.972 31 H 0.385 0.615 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.438 11.713 9.630 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.203 6.203 3 C 0.107 3.893 4 C -0.226 4.226 5 C -0.046 4.046 6 C -0.173 4.173 7 C -0.104 4.104 8 Cl -0.052 7.052 9 C -0.074 4.074 10 C -0.105 4.105 11 C 0.071 3.929 12 N -0.367 5.367 13 C -0.366 4.366 14 H 0.089 0.911 15 C -0.210 4.210 16 N -0.582 5.582 17 Si 0.738 3.262 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.208 1.208 21 H 0.118 0.882 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.150 0.850 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.157 0.843 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.218 0.782 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.178 11.491 9.654 17.091 hybrid contribution 0.131 -0.471 -0.596 0.771 sum -8.047 11.019 9.058 16.378 Atomic orbital electron populations 1.23056 0.79098 1.03974 1.00738 1.86306 1.20582 1.25863 1.87558 1.18948 0.91913 0.84325 0.94065 1.20964 0.99889 0.91070 1.10659 1.19393 0.91701 0.95340 0.98212 1.20841 0.99116 0.94507 1.02789 1.20545 0.91981 0.86256 1.11585 1.98318 1.80538 1.29054 1.97296 1.20813 1.00351 0.89335 0.96911 1.19609 0.90925 0.96306 1.03664 1.19478 0.94725 0.88777 0.89896 1.42283 1.62733 1.28522 1.03124 1.19237 1.23987 1.00019 0.93361 0.91125 1.24724 1.01222 0.99270 0.95800 1.69677 1.47855 1.40702 0.99990 0.86185 0.79458 0.83386 0.77138 1.21800 1.21853 1.20760 0.88248 0.93132 0.92743 0.84954 0.90727 0.91464 0.90860 0.84310 0.94838 0.95441 0.78188 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.29 -5.16 9.73 -19.50 -0.19 -5.35 16 3 C 0.15 2.67 6.66 -39.22 -0.26 2.41 16 4 C -0.21 -2.96 8.69 -39.44 -0.34 -3.30 16 5 C -0.05 -0.63 5.88 -104.61 -0.62 -1.24 16 6 C -0.12 -1.21 9.61 36.01 0.35 -0.86 16 7 C -0.08 -1.16 6.31 -39.49 -0.25 -1.41 16 8 Cl -0.08 -1.07 27.29 -51.86 -1.41 -2.49 16 9 C -0.05 -0.92 9.45 -39.57 -0.37 -1.29 16 10 C -0.10 -1.94 5.26 -104.47 -0.55 -2.48 16 11 C 0.20 4.29 6.04 -5.19 -0.03 4.25 16 12 N -0.72 -19.19 5.59 -61.08 -0.34 -19.53 16 13 C -0.23 -6.76 9.99 -15.06 -0.15 -6.91 16 14 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 15 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 16 N -0.93 -28.98 13.06 55.49 0.72 -28.26 16 17 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 22 H 0.05 0.49 7.65 -51.93 -0.40 0.10 16 23 H 0.05 0.62 7.67 -51.93 -0.40 0.22 16 24 H 0.13 1.52 6.30 -52.49 -0.33 1.19 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 27 H 0.07 0.73 6.90 -51.93 -0.36 0.38 16 28 H 0.14 2.20 8.04 -52.49 -0.42 1.78 16 29 H 0.03 0.74 7.86 -51.93 -0.41 0.33 16 30 H 0.03 0.58 8.00 -51.93 -0.42 0.16 16 31 H 0.38 10.92 7.66 -40.82 -0.31 10.61 16 32 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 290.35 15.07 4.38 4.38 Total: -1.00 -32.06 290.35 -7.06 -39.12 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -3.85 Total: 4.36 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -1.33 Total: -10.04 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.38 Total: -47.79 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.19 Total: -5.35 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.41 Total: -2.49 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.06 -7.06 -39.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258896949.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.554 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds