Wall clock time and date at job start Mon Mar 30 2020 06:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35967 * 116.99382 * 2 1 4 4 C 1.38768 * 119.97371 * 0.02562 * 3 2 1 5 5 C 1.38012 * 120.04400 * 179.97438 * 4 3 2 6 6 C 1.50695 * 120.00464 * 180.02562 * 5 4 3 7 7 C 1.39097 * 119.98789 * 0.02562 * 5 4 3 8 8 N 1.39393 * 120.02866 * 179.97438 * 7 5 4 9 9 C 1.46498 * 120.00548 * 270.00209 * 8 7 5 10 10 C 1.36837 * 120.00125 * 90.00332 * 8 7 5 11 11 H 1.08006 * 119.99718 * 23.09425 * 10 8 7 12 12 C 1.38751 * 120.00145 * 203.10073 * 10 8 7 13 13 N 1.31620 * 120.00294 * 13.32439 * 12 10 8 14 14 Si 1.86804 * 119.99884 * 193.32508 * 12 10 8 15 15 H 1.48501 * 109.47135 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47115 * 119.99947 * 14 12 10 17 17 H 1.48498 * 109.47263 * 239.99869 * 14 12 10 18 18 C 1.39063 * 119.93961 * 0.02562 * 7 5 4 19 19 C 1.38109 * 119.95086 * 359.74174 * 18 7 5 20 20 Cl 1.73601 * 119.98897 * 180.27361 * 19 18 7 21 21 H 1.08996 * 109.47086 * 59.99865 * 1 2 3 22 22 H 1.08993 * 109.46737 * 299.99490 * 1 2 3 23 23 H 1.09004 * 109.46509 * 179.97438 * 1 2 3 24 24 H 1.07996 * 119.98040 * 359.95723 * 4 3 2 25 25 H 1.09003 * 109.47109 * 89.99717 * 6 5 4 26 26 H 1.09001 * 109.47402 * 210.00130 * 6 5 4 27 27 H 1.09003 * 109.47289 * 330.00398 * 6 5 4 28 28 H 1.09004 * 109.47236 * 95.12228 * 9 8 7 29 29 H 1.08996 * 109.47390 * 215.12876 * 9 8 7 30 30 H 1.09008 * 109.47050 * 335.12839 * 9 8 7 31 31 H 0.96997 * 119.99968 * 180.02562 * 13 12 10 32 32 H 1.07996 * 120.02287 * 180.02562 * 18 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2898 2.3749 0.0005 5 6 1.9147 3.6054 0.0011 6 6 1.0924 4.8682 0.0022 7 6 3.3037 3.6798 0.0005 8 7 3.9358 4.9222 0.0005 9 6 4.2674 5.5754 -1.2681 10 6 4.2465 5.5318 1.1856 11 1 4.3585 4.9417 2.0832 12 6 4.4177 6.9078 1.2340 13 7 4.0311 7.6551 0.2218 14 14 5.1967 7.6998 2.7358 15 1 5.5403 6.6492 3.7274 16 1 6.4299 8.4216 2.3312 17 1 4.2388 8.6585 3.3428 18 6 4.0612 2.5136 -0.0011 19 6 3.4332 1.2835 0.0032 20 17 4.3779 -0.1730 0.0084 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3632 0.5137 0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 0.2114 2.3174 0.0003 25 1 0.8945 5.1720 1.0302 26 1 1.6397 5.6587 -0.5113 27 1 0.1480 4.6874 -0.5113 28 1 3.4734 6.2724 -1.5364 29 1 5.2069 6.1179 -1.1628 30 1 4.3686 4.8219 -2.0493 31 1 4.1511 8.6171 0.2555 32 1 5.1397 2.5697 -0.0011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258898967.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:12 Heat of formation + Delta-G solvation = 4.037984 kcal Electronic energy + Delta-G solvation = -16897.643817 eV Core-core repulsion = 14078.384354 eV Total energy + Delta-G solvation = -2819.259463 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.81645 -37.72952 -36.11092 -34.75108 -31.84509 -31.32491 -28.63754 -27.50444 -26.15755 -25.67902 -23.01554 -21.41198 -20.32975 -17.48103 -17.06495 -16.15515 -15.75431 -15.56096 -14.37810 -13.90785 -13.74778 -13.52814 -13.28144 -12.81932 -12.47574 -12.31823 -12.08409 -11.70270 -11.19955 -11.15492 -11.06506 -10.91207 -10.71139 -10.53918 -10.42882 -10.22000 -10.02350 -9.96150 -8.69774 -8.23032 -7.39695 -7.00674 -5.85690 -3.36099 1.70306 1.90023 2.63100 3.32561 3.40614 3.43160 3.48365 4.15936 4.42196 5.07584 5.21120 5.23148 5.29349 5.35511 5.46082 5.54619 5.73335 6.00450 6.19577 6.29039 6.36851 6.44794 6.66538 6.69416 6.92858 7.12337 7.23333 7.44038 7.60027 7.64537 7.75958 8.34924 9.10850 9.79678 10.19625 11.19135 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.026962 B = 0.006505 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.258439 B = 4303.573063 C = 4770.481507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.109 3.891 4 C -0.198 4.198 5 C -0.055 4.055 6 C -0.102 4.102 7 C 0.189 3.811 8 N -0.561 5.561 9 C 0.162 3.838 10 C -0.257 4.257 11 H 0.071 0.929 12 C 0.010 3.990 13 N -0.902 5.902 14 Si 0.907 3.093 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.289 1.289 18 C -0.092 4.092 19 C -0.066 4.066 20 Cl -0.082 7.082 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.094 0.906 24 H 0.126 0.874 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.045 0.955 28 H 0.038 0.962 29 H 0.047 0.953 30 H 0.002 0.998 31 H 0.254 0.746 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.916 -10.679 -1.900 12.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.064 3.936 4 C -0.217 4.217 5 C -0.058 4.058 6 C -0.158 4.158 7 C 0.094 3.906 8 N -0.280 5.280 9 C 0.019 3.981 10 C -0.385 4.385 11 H 0.089 0.911 12 C -0.189 4.189 13 N -0.546 5.546 14 Si 0.736 3.264 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.216 1.216 18 C -0.113 4.113 19 C -0.094 4.094 20 Cl -0.053 7.053 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.113 0.887 24 H 0.144 0.856 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.021 0.979 31 H 0.065 0.935 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.706 -10.753 -1.934 12.326 hybrid contribution 0.215 0.528 0.850 1.024 sum -5.491 -10.225 -1.084 11.657 Atomic orbital electron populations 1.22975 0.79054 1.03288 1.01236 1.86101 1.20728 1.26541 1.89316 1.18498 0.90243 0.84563 1.00338 1.20886 0.99206 0.91281 1.10333 1.20735 0.95154 0.94313 0.95570 1.20637 0.97293 0.95449 1.02446 1.17393 0.89106 0.87765 0.96365 1.41338 1.66658 1.15926 1.04098 1.20900 1.00351 0.93402 0.83436 1.19159 1.42315 0.89603 0.87455 0.91133 1.24999 1.00101 0.96071 0.97698 1.70066 1.48828 1.04550 1.31156 0.86155 0.78796 0.79220 0.82217 1.20167 1.21410 1.21588 1.21643 1.00842 0.89671 0.99171 1.19973 0.88190 0.87697 1.13539 1.98309 1.72420 1.37211 1.97400 0.92894 0.92857 0.88720 0.85601 0.91384 0.89223 0.93558 0.94338 0.93462 0.97928 0.93545 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -4.80 9.95 -19.64 -0.20 -5.00 16 3 C 0.11 1.88 6.68 -39.15 -0.26 1.62 16 4 C -0.20 -3.33 8.68 -39.47 -0.34 -3.67 16 5 C -0.05 -1.07 5.90 -104.39 -0.62 -1.69 16 6 C -0.10 -1.93 9.77 36.00 0.35 -1.57 16 7 C 0.19 4.10 5.00 -83.80 -0.42 3.68 16 8 N -0.56 -13.69 1.99 -120.48 -0.24 -13.93 16 9 C 0.16 3.85 8.65 59.85 0.52 4.37 16 10 C -0.26 -6.83 9.63 -15.13 -0.15 -6.97 16 11 H 0.07 1.90 7.86 -52.48 -0.41 1.48 16 12 C 0.01 0.28 5.09 -17.45 -0.09 0.19 16 13 N -0.90 -24.76 10.73 55.49 0.60 -24.17 16 14 Si 0.91 21.20 29.57 -169.99 -5.03 16.17 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 C -0.09 -1.83 9.75 -39.32 -0.38 -2.21 16 19 C -0.07 -1.21 6.33 -39.39 -0.25 -1.46 16 20 Cl -0.08 -1.35 28.49 -51.86 -1.48 -2.83 16 21 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 22 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 23 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.13 1.75 6.29 -52.49 -0.33 1.42 16 25 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 26 H 0.09 1.97 6.53 -51.93 -0.34 1.63 16 27 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 28 H 0.04 0.96 6.69 -51.93 -0.35 0.61 16 29 H 0.05 1.19 7.35 -51.93 -0.38 0.81 16 30 H 0.00 0.05 8.01 -51.92 -0.42 -0.37 16 31 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.13 2.62 8.06 -52.49 -0.42 2.20 16 LS Contribution 286.14 15.07 4.31 4.31 Total: -1.00 -28.06 286.14 -6.52 -34.59 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -3.85 Total: -2.74 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.65 Total: -6.41 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.35 Total: -38.09 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.20 Total: -5.00 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -1.48 Total: -2.83 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.06 -6.52 -34.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258898967.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.625 kcal (2) G-P(sol) polarization free energy of solvation -28.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds