Wall clock time and date at job start Mon Mar 30 2020 06:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48505 * 109.46838 * 269.99539 * 3 2 1 5 5 H 1.48497 * 109.47159 * 29.99967 * 3 2 1 6 6 H 1.48498 * 109.47047 * 150.00111 * 3 2 1 7 7 C 1.37873 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00068 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00032 * 180.02562 * 7 2 1 10 10 F 1.39894 * 109.47152 * 59.99879 * 9 7 2 11 11 F 1.39900 * 109.46615 * 299.99661 * 9 7 2 12 12 C 1.50707 * 109.47128 * 180.02562 * 9 7 2 13 13 C 1.38399 * 119.84516 * 89.99445 * 12 9 7 14 14 C 1.38135 * 120.18778 * 179.97438 * 13 12 9 15 15 C 1.38612 * 119.82295 * 0.02562 * 14 13 12 16 16 N 1.39457 * 133.36692 * 180.02562 * 15 14 13 17 17 H 0.97003 * 126.24936 * 359.95347 * 16 15 14 18 18 C 1.34775 * 107.49412 * 179.97438 * 16 15 14 19 19 O 1.21604 * 125.27597 * 179.97438 * 18 16 15 20 20 O 1.34232 * 109.45018 * 359.97438 * 18 16 15 21 21 C 1.35559 * 109.17655 * 0.02562 * 20 18 16 22 22 C 1.38123 * 119.83791 * 269.97573 * 12 9 7 23 23 H 0.97002 * 119.99718 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.91225 * 359.97438 * 13 12 9 25 25 H 1.07999 * 120.09225 * 179.72510 * 14 13 12 26 26 H 1.08002 * 120.04631 * 359.97438 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1941 0.0011 10 9 3.9775 -0.5343 1.1434 11 9 3.9783 -0.5349 -1.1412 12 6 4.0139 -2.6149 0.0010 13 6 4.2438 -3.2641 -1.1995 14 6 4.7048 -4.5662 -1.2079 15 6 4.9366 -5.2232 -0.0095 16 7 5.3899 -6.5030 0.3089 17 1 5.6359 -7.1977 -0.3218 18 6 5.4231 -6.5983 1.6528 19 8 5.7707 -7.5813 2.2787 20 8 5.0132 -5.4401 2.1934 21 6 4.7050 -4.5698 1.2007 22 6 4.2430 -3.2630 1.1991 23 1 -0.4850 0.8401 -0.0004 24 1 4.0624 -2.7512 -2.1325 25 1 4.8794 -5.0728 -2.1456 26 1 4.0628 -2.7520 2.1333 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259043839.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:18 Heat of formation + Delta-G solvation = -109.121874 kcal Electronic energy + Delta-G solvation = -18464.181052 eV Core-core repulsion = 14952.384835 eV Total energy + Delta-G solvation = -3511.796218 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.049 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.86394 -45.74162 -43.21221 -38.59139 -37.33165 -35.36943 -32.95316 -30.87840 -30.12084 -27.15973 -23.76528 -23.42942 -23.22556 -21.12615 -18.44964 -18.12945 -17.66155 -17.30400 -16.68899 -16.11769 -15.85831 -15.30157 -14.82462 -14.15772 -13.93607 -13.60487 -13.35715 -13.10757 -12.80779 -12.74922 -12.60384 -12.15389 -11.72968 -11.29334 -11.21583 -10.95627 -10.86068 -10.59354 -9.65236 -9.42666 -8.96926 -8.74061 -8.13283 -6.49840 -4.76559 1.11382 1.20920 2.24410 2.43042 2.88585 3.24731 3.30091 3.41183 3.61310 4.19169 4.34910 4.60063 4.80134 4.88701 5.08853 5.24261 5.44596 5.65863 5.85260 5.93550 6.21263 6.32600 6.41097 6.52213 6.69839 6.90175 7.14982 7.64082 7.92519 8.46920 9.03495 10.58260 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.042625 B = 0.006063 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.737538 B = 4617.335905 C = 4736.882239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.100 3.900 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.242 1.242 7 C -0.581 4.581 8 H 0.101 0.899 9 C 0.410 3.590 10 F -0.217 7.217 11 F -0.218 7.218 12 C -0.083 4.083 13 C -0.068 4.068 14 C -0.104 4.104 15 C 0.060 3.940 16 N -0.647 5.647 17 H 0.440 0.560 18 C 0.638 3.362 19 O -0.499 6.499 20 O -0.234 6.234 21 C 0.030 3.970 22 C -0.050 4.050 23 H 0.275 0.725 24 H 0.149 0.851 25 H 0.137 0.863 26 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.968 -7.055 -3.220 11.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.110 4.110 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.165 1.165 7 C -0.617 4.617 8 H 0.119 0.881 9 C 0.373 3.627 10 F -0.198 7.198 11 F -0.200 7.200 12 C -0.085 4.085 13 C -0.087 4.087 14 C -0.125 4.125 15 C -0.038 4.038 16 N -0.304 5.304 17 H 0.283 0.717 18 C 0.392 3.608 19 O -0.383 6.383 20 O -0.139 6.139 21 C -0.016 4.016 22 C -0.069 4.069 23 H 0.085 0.915 24 H 0.166 0.834 25 H 0.155 0.845 26 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.964 -7.367 -2.475 11.864 hybrid contribution 0.417 0.451 -0.374 0.719 sum 9.381 -6.916 -2.848 11.998 Atomic orbital electron populations 1.69874 1.06420 1.28446 1.44777 1.24934 0.95026 0.99845 0.91168 0.86994 0.81457 0.81946 0.79282 1.19851 1.21611 1.16497 1.21153 0.85317 0.96936 1.58307 0.88140 1.17553 0.93490 0.80835 0.70782 1.92920 1.91110 1.83066 1.52682 1.92824 1.91118 1.83031 1.53005 1.20289 0.98102 0.97455 0.92619 1.20901 0.95942 0.93016 0.98800 1.20004 1.03134 0.94637 0.94688 1.18482 1.03855 0.85571 0.95914 1.43534 1.64376 1.14418 1.08089 0.71682 1.18531 0.78641 0.82581 0.81035 1.91166 1.53026 1.28474 1.65657 1.84977 1.72979 1.22339 1.33648 1.18814 1.06535 0.92836 0.83407 1.19792 0.97791 0.89122 1.00148 0.91510 0.83359 0.84473 0.83258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.40 13.96 55.43 0.77 -23.63 15 2 C 0.10 2.71 5.47 -17.82 -0.10 2.61 15 3 Si 0.88 20.99 25.99 -169.99 -4.42 16.57 15 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.24 -5.71 5.49 56.52 0.31 -5.40 15 7 C -0.58 -15.14 9.19 -34.44 -0.32 -15.45 15 8 H 0.10 2.76 7.98 -52.49 -0.42 2.34 15 9 C 0.41 9.24 1.50 -29.03 -0.04 9.20 15 10 F -0.22 -5.01 13.32 2.25 0.03 -4.98 15 11 F -0.22 -4.89 14.15 2.25 0.03 -4.86 15 12 C -0.08 -1.53 4.93 -104.60 -0.52 -2.05 15 13 C -0.07 -1.03 9.39 -39.56 -0.37 -1.41 15 14 C -0.10 -1.28 10.07 -39.48 -0.40 -1.67 15 15 C 0.06 0.81 7.25 -83.79 -0.61 0.20 15 16 N -0.65 -7.58 6.22 -14.39 -0.09 -7.67 15 17 H 0.44 3.50 8.96 -40.82 -0.37 3.14 15 18 C 0.64 9.68 9.44 54.05 0.51 10.19 15 19 O -0.50 -8.66 18.05 -19.01 -0.34 -9.01 15 20 O -0.23 -3.82 10.72 -21.99 -0.24 -4.06 15 21 C 0.03 0.48 7.35 -38.98 -0.29 0.19 15 22 C -0.05 -0.86 9.41 -39.48 -0.37 -1.23 15 23 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 24 H 0.15 2.12 7.59 -52.49 -0.40 1.72 15 25 H 0.14 1.18 8.06 -52.49 -0.42 0.75 15 26 H 0.15 2.55 7.59 -52.49 -0.40 2.15 15 LS Contribution 244.61 15.07 3.69 3.69 Total: -1.00 -29.94 244.61 -4.29 -34.24 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: -1.23 Total: -0.86 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -2.50 Total: 0.57 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.68 Total: -31.30 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.58 Total: -13.07 kcal Atomic # 9 Polarization: -9.90 SS G_CDS: 0.06 Total: -9.84 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.42 Total: 16.57 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.94 -4.29 -34.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259043839.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.886 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds