Wall clock time and date at job start Mon Mar 30 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99735 * 2 1 4 4 H 1.48496 * 109.46824 * 269.99561 * 3 2 1 5 5 H 1.48493 * 109.47028 * 30.00060 * 3 2 1 6 6 H 1.48504 * 109.46678 * 149.99963 * 3 2 1 7 7 C 1.37877 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00321 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99718 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47163 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00135 * 180.02562 * 10 9 7 12 12 O 1.21518 * 119.99891 * 359.97438 * 11 10 9 13 13 O 1.34684 * 119.99923 * 179.97438 * 11 10 9 14 14 C 1.35937 * 116.99706 * 185.95566 * 13 11 10 15 15 C 1.38756 * 120.04492 * 249.72766 * 14 13 11 16 16 C 1.38141 * 119.96672 * 179.69976 * 15 14 13 17 17 C 1.38262 * 120.06708 * 0.59864 * 16 15 14 18 18 C 1.38353 * 120.09728 * 359.67870 * 17 16 15 19 19 Cl 1.73603 * 119.98674 * 180.02562 * 18 17 16 20 20 C 1.38283 * 120.03028 * 0.02562 * 18 17 16 21 21 H 0.96991 * 120.00095 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47264 * 60.00028 * 9 7 2 23 23 H 1.08998 * 109.47186 * 299.99925 * 9 7 2 24 24 H 0.97001 * 120.00092 * 359.97438 * 10 9 7 25 25 H 1.08003 * 120.01536 * 359.97438 * 15 14 13 26 26 H 1.08000 * 119.96179 * 180.27448 * 16 15 14 27 27 H 1.07999 * 119.94529 * 179.69729 * 17 16 15 28 28 H 1.07999 * 120.03303 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6127 0.0027 11 6 1.7539 -4.8833 0.0033 12 8 0.5592 -5.1054 0.0035 13 8 2.6292 -5.9070 0.0037 14 6 2.1146 -7.1589 -0.1214 15 6 2.1466 -8.0340 0.9550 16 6 1.6176 -9.3037 0.8281 17 6 1.0673 -9.7078 -0.3743 18 6 1.0392 -8.8396 -1.4510 19 17 0.3470 -9.3498 -2.9592 20 6 1.5621 -7.5655 -1.3266 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6248 -2.5563 0.8920 24 1 3.1568 -3.4354 0.0022 25 1 2.5809 -7.7209 1.8930 26 1 1.6385 -9.9832 1.6673 27 1 0.6587 -10.7027 -0.4728 28 1 1.5397 -6.8876 -2.1670 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259094752.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:02 Heat of formation + Delta-G solvation = -79.018232 kcal Electronic energy + Delta-G solvation = -15702.091672 eV Core-core repulsion = 12743.397526 eV Total energy + Delta-G solvation = -2958.694146 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.35412 -40.00900 -38.24128 -37.33017 -36.32388 -34.49175 -31.97971 -31.37535 -29.40593 -25.62305 -24.07241 -23.79410 -22.21382 -20.51995 -19.02764 -18.15753 -17.89779 -17.51248 -16.84321 -16.25588 -16.12574 -15.39988 -15.21376 -14.79856 -14.44789 -14.35203 -14.07370 -13.32618 -13.03804 -12.92889 -12.72732 -12.53671 -12.27041 -12.07297 -12.04225 -11.80921 -11.53203 -10.86658 -10.12100 -10.05032 -9.79167 -8.32171 -6.49065 -0.21102 0.03982 0.94825 1.28779 1.46207 1.46919 1.59003 1.61544 2.36975 2.51307 3.03558 3.34245 3.70166 3.92674 3.96474 4.19085 4.38844 4.54988 4.96349 5.01080 5.10017 5.14417 5.17113 5.22679 5.37724 5.54200 5.74360 5.76844 6.53702 6.65897 7.18601 7.34795 8.79847 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.039983 B = 0.004015 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.124275 B = 6972.185004 C = 7350.485480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.987 3.013 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.256 1.256 7 C -0.559 4.559 8 H 0.086 0.914 9 C 0.282 3.718 10 N -0.677 5.677 11 C 0.634 3.366 12 O -0.600 6.600 13 O -0.302 6.302 14 C 0.086 3.914 15 C -0.117 4.117 16 C -0.079 4.079 17 C -0.103 4.103 18 C -0.031 4.031 19 Cl -0.062 7.062 20 C -0.135 4.135 21 H 0.271 0.729 22 H -0.001 1.001 23 H 0.000 1.000 24 H 0.415 0.585 25 H 0.155 0.845 26 H 0.186 0.814 27 H 0.171 0.829 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.173 -18.871 0.250 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.810 3.190 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.180 1.180 7 C -0.596 4.596 8 H 0.104 0.896 9 C 0.162 3.838 10 N -0.334 5.334 11 C 0.387 3.613 12 O -0.490 6.490 13 O -0.215 6.215 14 C 0.044 3.956 15 C -0.135 4.135 16 C -0.097 4.097 17 C -0.122 4.122 18 C -0.058 4.058 19 Cl -0.033 7.033 20 C -0.154 4.154 21 H 0.080 0.920 22 H 0.016 0.984 23 H 0.018 0.982 24 H 0.252 0.748 25 H 0.173 0.827 26 H 0.203 0.797 27 H 0.189 0.811 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.365 -18.932 0.130 19.678 hybrid contribution 0.229 1.188 -0.470 1.298 sum 5.594 -17.744 -0.340 18.608 Atomic orbital electron populations 1.70118 1.08167 1.28823 1.49470 1.26023 0.95805 1.03731 0.93656 0.85119 0.78470 0.76804 0.78615 1.19631 1.20817 1.17963 1.21548 0.94518 0.89988 1.53591 0.89556 1.18756 0.87768 0.82052 0.95249 1.45129 1.12473 1.01253 1.74555 1.18636 0.83315 0.82328 0.76993 1.90969 1.16148 1.84562 1.57365 1.84323 1.37766 1.13314 1.86054 1.18588 1.00267 0.82399 0.94345 1.21609 0.99634 0.94795 0.97473 1.21474 0.95036 0.94875 0.98300 1.21571 0.98995 1.00603 0.90991 1.20808 1.01121 0.94337 0.89538 1.98372 1.83003 1.90522 1.31408 1.21236 0.99632 0.96529 0.98048 0.92025 0.98351 0.98201 0.74829 0.82711 0.79652 0.81150 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.63 13.29 21.45 0.28 -54.34 15 2 C 0.01 0.44 5.46 84.65 0.46 0.90 15 3 Si 0.99 41.51 29.54 68.60 2.03 43.54 15 4 H -0.27 -11.05 7.11 99.48 0.71 -10.35 15 5 H -0.28 -11.76 7.11 99.48 0.71 -11.06 15 6 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 7 C -0.56 -29.80 9.28 25.60 0.24 -29.56 15 8 H 0.09 4.17 7.60 -2.91 -0.02 4.15 15 9 C 0.28 15.25 5.43 85.63 0.46 15.71 15 10 N -0.68 -29.77 5.55 -594.54 -3.30 -33.07 15 11 C 0.63 27.69 8.53 129.79 1.11 28.80 15 12 O -0.60 -30.51 15.84 19.78 0.31 -30.19 15 13 O -0.30 -10.88 10.09 0.21 0.00 -10.88 15 14 C 0.09 2.73 5.25 22.50 0.12 2.85 15 15 C -0.12 -2.73 9.99 22.37 0.22 -2.50 15 16 C -0.08 -1.31 10.04 22.25 0.22 -1.08 15 17 C -0.10 -1.87 9.83 22.30 0.22 -1.65 15 18 C -0.03 -0.78 6.32 22.31 0.14 -0.64 15 19 Cl -0.06 -1.43 28.95 -2.72 -0.08 -1.51 15 20 C -0.14 -4.17 9.18 22.39 0.21 -3.97 15 21 H 0.27 14.87 8.31 -92.71 -0.77 14.10 15 22 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 15 23 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 15 24 H 0.42 15.48 8.43 -92.71 -0.78 14.70 15 25 H 0.16 3.01 8.06 -2.91 -0.02 2.98 15 26 H 0.19 1.41 8.06 -2.91 -0.02 1.39 15 27 H 0.17 1.94 8.06 -2.91 -0.02 1.91 15 28 H 0.12 4.00 8.06 -2.91 -0.02 3.98 15 Total: -1.00 -68.30 276.72 3.06 -65.24 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.41 Total: 12.35 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 3.40 Total: 8.86 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -3.02 Total: -87.41 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: 0.32 Total: -41.07 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -68.30 3.06 -65.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259094752.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.780 kcal (2) G-P(sol) polarization free energy of solvation -68.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds