Wall clock time and date at job start Mon Mar 30 2020 06:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.47207 * 109.46870 * 2 1 4 4 N 2.60801 * 109.46946 * 359.97438 * 2 1 3 5 5 C 1.50701 * 109.47439 * 240.00386 * 2 1 3 6 6 H 1.08003 * 119.99718 * 239.99671 * 5 2 1 7 7 C 1.37870 * 120.00254 * 59.99432 * 5 2 1 8 8 N 1.31522 * 119.99960 * 0.02562 * 7 5 2 9 9 Si 1.86799 * 120.00193 * 180.02562 * 7 5 2 10 10 H 1.48506 * 109.47193 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47283 * 120.00240 * 9 7 5 12 12 H 1.48503 * 109.47181 * 240.00570 * 9 7 5 13 13 C 1.50697 * 109.47314 * 119.99653 * 2 1 3 14 14 C 1.38248 * 119.98298 * 240.00631 * 13 2 1 15 15 C 1.38202 * 120.08749 * 180.27944 * 14 13 2 16 16 C 1.38451 * 120.04714 * 359.48478 * 15 14 13 17 17 F 1.35101 * 120.02118 * 180.26023 * 16 15 14 18 18 C 1.38573 * 119.95189 * 0.50982 * 16 15 14 19 19 F 1.35104 * 120.03899 * 179.72200 * 18 16 15 20 20 C 1.38412 * 119.97354 * 60.02714 * 13 2 1 21 21 F 1.35101 * 120.02304 * 359.95313 * 20 13 2 22 22 H 1.08998 * 109.47498 * 300.00049 * 1 2 3 23 23 H 1.08999 * 109.46846 * 60.00217 * 1 2 3 24 24 H 1.09008 * 109.46964 * 179.97438 * 1 2 3 25 25 H 0.96997 * 119.99409 * 180.02562 * 8 7 5 26 26 H 1.08002 * 119.95055 * 359.97438 * 14 13 2 27 27 H 1.08008 * 119.97331 * 179.74722 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0206 1.3879 0.0000 4 7 2.3992 2.4589 -0.0011 5 6 2.0324 -0.7103 -1.2305 6 1 2.6534 -1.5884 -1.1314 7 6 1.6993 -0.2393 -2.4827 8 7 0.9435 0.8302 -2.6034 9 14 2.3215 -1.1202 -4.0079 10 1 3.1457 -2.2876 -3.6038 11 1 1.1663 -1.5866 -4.8161 12 1 3.1468 -0.1872 -4.8164 13 6 2.0323 -0.7103 1.2305 14 6 2.8270 -0.0380 2.1403 15 6 3.2937 -0.6890 3.2665 16 6 2.9573 -2.0131 3.4912 17 9 3.4095 -2.6474 4.5951 18 6 2.1608 -2.6887 2.5806 19 9 1.8361 -3.9824 2.7953 20 6 1.6981 -2.0356 1.4488 21 9 0.9211 -2.6921 0.5597 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7089 1.1613 -3.4844 26 1 3.0875 0.9959 1.9681 27 1 3.9178 -0.1631 3.9740 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259529493.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:22 Heat of formation + Delta-G solvation = -84.827577 kcal Electronic energy + Delta-G solvation = -18605.257698 eV Core-core repulsion = 15106.887749 eV Total energy + Delta-G solvation = -3498.369949 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.42482 -48.75692 -48.04144 -39.02487 -36.07573 -33.77432 -31.78179 -30.26132 -28.63917 -25.63194 -23.62532 -22.86434 -21.54446 -18.17013 -18.04049 -17.20769 -16.89936 -16.36623 -15.49386 -15.24716 -15.07879 -14.89836 -14.51157 -14.26733 -14.04393 -13.86858 -13.19383 -12.59395 -12.02840 -11.84507 -11.73221 -11.63551 -11.53189 -11.32092 -11.01468 -10.90735 -10.54593 -10.40568 -10.02142 -9.52070 -8.78321 -8.63145 -8.31722 -6.37444 -4.52759 1.01196 1.09147 3.15552 3.24782 3.28350 3.45858 3.66040 4.02317 4.08366 4.24595 4.42884 4.58729 4.66382 4.94818 4.99116 5.19877 5.47753 5.76548 6.04862 6.09877 6.20342 6.34239 6.51151 6.65382 6.89721 6.98924 7.42593 7.62859 7.77787 8.46916 8.93992 9.18253 10.66061 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.025311 B = 0.008165 C = 0.007012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.959789 B = 3428.367487 C = 3992.265686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.195 3.805 3 C 0.269 3.731 4 N -0.504 5.504 5 C -0.519 4.519 6 H 0.076 0.924 7 C 0.074 3.926 8 N -0.871 5.871 9 Si 0.906 3.094 10 H -0.268 1.268 11 H -0.278 1.278 12 H -0.282 1.282 13 C -0.052 4.052 14 C -0.082 4.082 15 C -0.134 4.134 16 C 0.075 3.925 17 F -0.130 7.130 18 C 0.026 3.974 19 F -0.124 7.124 20 C 0.120 3.880 21 F -0.102 7.102 22 H 0.023 0.977 23 H 0.099 0.901 24 H 0.060 0.940 25 H 0.270 0.730 26 H 0.144 0.856 27 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.095 -5.125 8.664 10.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.191 3.809 3 C -0.047 4.047 4 N -0.181 5.181 5 C -0.557 4.557 6 H 0.094 0.906 7 C -0.132 4.132 8 N -0.506 5.506 9 Si 0.733 3.267 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.207 1.207 13 C -0.055 4.055 14 C -0.100 4.100 15 C -0.153 4.153 16 C 0.054 3.946 17 F -0.108 7.108 18 C 0.005 3.995 19 F -0.103 7.103 20 C 0.099 3.901 21 F -0.080 7.080 22 H 0.043 0.957 23 H 0.118 0.882 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.161 0.839 27 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.543 -3.476 8.528 9.337 hybrid contribution 0.083 -1.262 -0.876 1.539 sum 1.627 -4.738 7.652 9.146 Atomic orbital electron populations 1.21937 0.93362 1.02178 1.02151 1.14919 0.94251 0.81259 0.90495 1.29615 0.91168 0.94435 0.89460 1.80898 1.11867 1.13067 1.12284 1.20835 1.34110 1.12972 0.87783 0.90593 1.25011 0.93988 0.94614 0.99605 1.69836 1.34329 1.21721 1.24713 0.86272 0.78923 0.79676 0.81832 1.19178 1.20390 1.20739 1.20202 0.96419 0.91749 0.97107 1.21036 0.95894 1.00880 0.92197 1.21018 1.02496 0.92003 0.99769 1.17247 1.00188 0.91804 0.85318 1.91506 1.87321 1.82024 1.49963 1.17557 1.04420 0.80510 0.97038 1.91512 1.91284 1.32810 1.94666 1.16967 0.95387 0.90460 0.87300 1.91575 1.70918 1.80030 1.65505 0.95745 0.88249 0.92110 0.91985 0.83851 0.83514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 7.99 37.16 0.30 -2.58 15 2 C 0.19 4.23 0.44 -159.60 -0.07 4.17 15 3 C 0.27 6.26 10.50 -20.76 -0.22 6.04 15 4 N -0.50 -12.21 18.46 42.15 0.78 -11.44 15 5 C -0.52 -12.43 7.01 -34.44 -0.24 -12.67 15 6 H 0.08 1.81 7.60 -52.48 -0.40 1.41 15 7 C 0.07 1.82 5.14 -17.82 -0.09 1.73 15 8 N -0.87 -22.38 10.41 55.43 0.58 -21.80 15 9 Si 0.91 19.63 29.54 -169.99 -5.02 14.61 15 10 H -0.27 -5.73 7.11 56.52 0.40 -5.32 15 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 13 C -0.05 -0.97 4.71 -104.56 -0.49 -1.47 15 14 C -0.08 -1.31 9.14 -39.59 -0.36 -1.67 15 15 C -0.13 -1.81 10.02 -39.52 -0.40 -2.21 15 16 C 0.07 1.11 7.31 -39.38 -0.29 0.82 15 17 F -0.13 -1.87 17.18 2.25 0.04 -1.84 15 18 C 0.03 0.43 7.31 -39.32 -0.29 0.14 15 19 F -0.12 -2.07 17.10 2.25 0.04 -2.03 15 20 C 0.12 2.15 6.69 -39.38 -0.26 1.89 15 21 F -0.10 -1.97 14.29 2.25 0.03 -1.94 15 22 H 0.02 0.45 8.14 -51.93 -0.42 0.02 15 23 H 0.10 2.31 6.07 -51.93 -0.32 2.00 15 24 H 0.06 1.21 6.31 -51.92 -0.33 0.88 15 25 H 0.27 6.69 8.31 -40.82 -0.34 6.35 15 26 H 0.14 2.32 6.42 -52.49 -0.34 1.99 15 27 H 0.15 1.53 8.06 -52.48 -0.42 1.10 15 LS Contribution 255.48 15.07 3.85 3.85 Total: -1.00 -25.87 255.48 -3.48 -29.35 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: -1.36 Total: -2.94 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -2.41 Total: -5.82 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 1.35 Total: -33.24 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.11 Total: -5.80 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -25.87 -3.48 -29.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259529493.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.482 kcal (2) G-P(sol) polarization free energy of solvation -25.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds