Wall clock time and date at job start Mon Mar 30 2020 06:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.47207 * 109.46870 * 2 1 4 4 N 2.60801 * 109.46946 * 359.97438 * 2 1 3 5 5 C 1.50701 * 109.47439 * 240.00386 * 2 1 3 6 6 H 1.08003 * 119.99718 * 239.99671 * 5 2 1 7 7 C 1.37870 * 120.00254 * 59.99432 * 5 2 1 8 8 N 1.31522 * 119.99960 * 0.02562 * 7 5 2 9 9 Si 1.86799 * 120.00193 * 180.02562 * 7 5 2 10 10 H 1.48506 * 109.47193 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47283 * 120.00240 * 9 7 5 12 12 H 1.48503 * 109.47181 * 240.00570 * 9 7 5 13 13 C 1.50697 * 109.47314 * 119.99653 * 2 1 3 14 14 C 1.38248 * 119.98298 * 240.00631 * 13 2 1 15 15 C 1.38202 * 120.08749 * 180.27944 * 14 13 2 16 16 C 1.38451 * 120.04714 * 359.48478 * 15 14 13 17 17 F 1.35101 * 120.02118 * 180.26023 * 16 15 14 18 18 C 1.38573 * 119.95189 * 0.50982 * 16 15 14 19 19 F 1.35104 * 120.03899 * 179.72200 * 18 16 15 20 20 C 1.38412 * 119.97354 * 60.02714 * 13 2 1 21 21 F 1.35101 * 120.02304 * 359.95313 * 20 13 2 22 22 H 1.08998 * 109.47498 * 300.00049 * 1 2 3 23 23 H 1.08999 * 109.46846 * 60.00217 * 1 2 3 24 24 H 1.09008 * 109.46964 * 179.97438 * 1 2 3 25 25 H 0.96997 * 119.99409 * 180.02562 * 8 7 5 26 26 H 1.08002 * 119.95055 * 359.97438 * 14 13 2 27 27 H 1.08008 * 119.97331 * 179.74722 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0206 1.3879 0.0000 4 7 2.3992 2.4589 -0.0011 5 6 2.0324 -0.7103 -1.2305 6 1 2.6534 -1.5884 -1.1314 7 6 1.6993 -0.2393 -2.4827 8 7 0.9435 0.8302 -2.6034 9 14 2.3215 -1.1202 -4.0079 10 1 3.1457 -2.2876 -3.6038 11 1 1.1663 -1.5866 -4.8161 12 1 3.1468 -0.1872 -4.8164 13 6 2.0323 -0.7103 1.2305 14 6 2.8270 -0.0380 2.1403 15 6 3.2937 -0.6890 3.2665 16 6 2.9573 -2.0131 3.4912 17 9 3.4095 -2.6474 4.5951 18 6 2.1608 -2.6887 2.5806 19 9 1.8361 -3.9824 2.7953 20 6 1.6981 -2.0356 1.4488 21 9 0.9211 -2.6921 0.5597 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7089 1.1613 -3.4844 26 1 3.0875 0.9959 1.9681 27 1 3.9178 -0.1631 3.9740 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259529493.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:22 Heat of formation + Delta-G solvation = -97.151416 kcal Electronic energy + Delta-G solvation = -18605.792100 eV Core-core repulsion = 15106.887749 eV Total energy + Delta-G solvation = -3498.904350 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.70149 -50.05219 -49.37309 -40.41841 -37.73128 -35.58664 -33.49071 -31.53498 -30.08721 -27.44914 -25.13534 -24.18412 -23.04515 -19.76401 -19.35118 -18.54719 -18.40683 -17.66515 -17.00750 -16.73736 -16.56960 -16.33249 -15.86946 -15.63534 -15.42032 -15.29319 -14.87948 -14.10036 -13.76047 -13.44598 -13.29470 -13.16209 -13.09423 -12.87857 -12.71998 -12.54845 -12.24219 -12.11456 -11.68113 -11.26395 -10.65377 -9.90966 -9.67230 -8.24211 -6.43381 -0.27284 -0.17131 1.42507 1.47636 1.57209 2.14764 2.21197 2.28018 2.40898 2.44005 3.00063 3.18844 3.29602 3.42485 3.62099 3.84285 3.94604 4.52577 4.68757 4.82924 4.84529 4.86066 4.93254 5.16802 5.29188 5.56884 5.63532 5.84403 6.01235 6.58714 7.11462 7.29558 8.77868 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.025311 B = 0.008165 C = 0.007012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.959789 B = 3428.367487 C = 3992.265686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.188 3.812 3 C 0.278 3.722 4 N -0.528 5.528 5 C -0.523 4.523 6 H 0.073 0.927 7 C 0.033 3.967 8 N -0.897 5.897 9 Si 0.956 3.044 10 H -0.263 1.263 11 H -0.275 1.275 12 H -0.287 1.287 13 C -0.069 4.069 14 C -0.079 4.079 15 C -0.106 4.106 16 C 0.086 3.914 17 F -0.123 7.123 18 C 0.024 3.976 19 F -0.127 7.127 20 C 0.107 3.893 21 F -0.116 7.116 22 H 0.042 0.958 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.268 0.732 26 H 0.143 0.857 27 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.043 -5.643 10.075 11.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.184 3.816 3 C -0.038 4.038 4 N -0.205 5.205 5 C -0.561 4.561 6 H 0.091 0.909 7 C -0.170 4.170 8 N -0.533 5.533 9 Si 0.781 3.219 10 H -0.187 1.187 11 H -0.201 1.201 12 H -0.213 1.213 13 C -0.071 4.071 14 C -0.097 4.097 15 C -0.124 4.124 16 C 0.066 3.934 17 F -0.101 7.101 18 C 0.003 3.997 19 F -0.106 7.106 20 C 0.086 3.914 21 F -0.094 7.094 22 H 0.061 0.939 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.160 0.840 27 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 2.493 -4.006 9.951 11.013 hybrid contribution -0.184 -1.121 -1.225 1.671 sum 2.309 -5.128 8.726 10.381 Atomic orbital electron populations 1.21820 0.93106 1.02318 1.01745 1.14972 0.94584 0.80558 0.91487 1.29921 0.90538 0.94638 0.88694 1.80884 1.12701 1.13713 1.13198 1.21075 1.33501 1.12762 0.88779 0.90880 1.25641 0.94291 0.95201 1.01894 1.69941 1.35545 1.22922 1.24881 0.85506 0.78411 0.78744 0.79204 1.18660 1.20090 1.21296 1.19956 0.98252 0.92058 0.96864 1.21033 0.95415 1.00791 0.92504 1.21305 1.01022 0.91160 0.98952 1.17272 0.99220 0.92016 0.84874 1.91536 1.87071 1.82000 1.49502 1.17601 1.04694 0.80437 0.96977 1.91505 1.91384 1.33049 1.94634 1.17005 0.96104 0.90422 0.87845 1.91532 1.71474 1.80276 1.66163 0.93853 0.90826 0.91673 0.92277 0.83966 0.79402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 7.99 71.98 0.58 -4.91 15 2 C 0.19 8.10 0.44 -55.48 -0.02 8.08 15 3 C 0.28 12.80 10.50 89.44 0.94 13.74 15 4 N -0.53 -25.37 18.46 20.01 0.37 -25.00 15 5 C -0.52 -24.99 7.01 25.60 0.18 -24.81 15 6 H 0.07 3.47 7.60 -2.91 -0.02 3.44 15 7 C 0.03 1.61 5.14 84.65 0.44 2.04 15 8 N -0.90 -46.57 10.41 21.45 0.22 -46.35 15 9 Si 0.96 40.22 29.54 68.60 2.03 42.25 15 10 H -0.26 -10.73 7.11 99.48 0.71 -10.02 15 11 H -0.28 -11.37 7.11 99.48 0.71 -10.66 15 12 H -0.29 -12.23 7.11 99.48 0.71 -11.52 15 13 C -0.07 -2.47 4.71 -19.82 -0.09 -2.57 15 14 C -0.08 -2.33 9.14 22.26 0.20 -2.13 15 15 C -0.11 -2.44 10.02 22.31 0.22 -2.22 15 16 C 0.09 2.27 7.31 22.40 0.16 2.43 15 17 F -0.12 -3.09 17.18 44.97 0.77 -2.31 15 18 C 0.02 0.74 7.31 22.44 0.16 0.90 15 19 F -0.13 -4.03 17.10 44.97 0.77 -3.26 15 20 C 0.11 3.72 6.69 22.40 0.15 3.87 15 21 F -0.12 -4.44 14.29 44.97 0.64 -3.80 15 22 H 0.04 1.59 8.14 -2.39 -0.02 1.57 15 23 H 0.07 3.47 6.07 -2.39 -0.01 3.46 15 24 H 0.06 2.61 6.31 -2.38 -0.02 2.59 15 25 H 0.27 13.46 8.31 -92.71 -0.77 12.69 15 26 H 0.14 4.30 6.42 -2.91 -0.02 4.28 15 27 H 0.19 2.84 8.06 -2.91 -0.02 2.81 15 Total: -1.00 -54.37 255.48 8.96 -45.41 By element: Atomic # 1 Polarization: -2.60 SS G_CDS: 1.24 Total: -1.37 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 2.92 Total: -5.56 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: 0.59 Total: -71.35 kcal Atomic # 9 Polarization: -11.56 SS G_CDS: 2.18 Total: -9.38 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -54.37 8.96 -45.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259529493.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.743 kcal (2) G-P(sol) polarization free energy of solvation -54.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds