Wall clock time and date at job start Mon Mar 30 2020 06:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.47197 * 109.46954 * 2 1 4 4 N 2.60801 * 109.46956 * 0.02562 * 2 1 3 5 5 C 1.50704 * 109.47633 * 120.00120 * 2 1 3 6 6 H 1.07993 * 119.99824 * 119.99515 * 5 2 1 7 7 C 1.37882 * 119.99753 * 300.00507 * 5 2 1 8 8 N 1.31516 * 119.99626 * 359.97438 * 7 5 2 9 9 Si 1.86790 * 119.99773 * 179.97438 * 7 5 2 10 10 H 1.48506 * 109.47401 * 59.99485 * 9 7 5 11 11 H 1.48497 * 109.47445 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47414 * 300.00008 * 9 7 5 13 13 C 1.50702 * 109.46991 * 240.00517 * 2 1 3 14 14 C 1.38241 * 119.98135 * 359.97438 * 13 2 1 15 15 C 1.38203 * 120.09282 * 179.97438 * 14 13 2 16 16 C 1.38446 * 120.04250 * 0.27949 * 15 14 13 17 17 F 1.35097 * 120.02250 * 179.71947 * 16 15 14 18 18 C 1.38578 * 119.95425 * 359.46959 * 16 15 14 19 19 F 1.35107 * 120.04362 * 180.27496 * 18 16 15 20 20 C 1.38409 * 119.97368 * 180.02562 * 13 2 1 21 21 F 1.35100 * 120.02609 * 0.02562 * 20 13 2 22 22 H 1.09008 * 109.47217 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47278 * 299.99505 * 1 2 3 24 24 H 1.09000 * 109.47602 * 60.00161 * 1 2 3 25 25 H 0.97000 * 119.99235 * 180.02562 * 8 7 5 26 26 H 1.08000 * 119.95219 * 0.02562 * 14 13 2 27 27 H 1.08002 * 119.97607 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0205 1.3878 0.0000 4 7 2.3992 2.4589 0.0011 5 6 2.0324 -0.7104 1.2304 6 1 2.6532 -1.5885 1.1313 7 6 1.6993 -0.2394 2.4828 8 7 0.9434 0.8301 2.6034 9 14 2.3215 -1.1204 4.0078 10 1 3.8065 -1.1209 4.0080 11 1 1.8271 -0.4201 5.2204 12 1 1.8261 -2.5203 4.0076 13 6 2.0322 -0.7103 -1.2306 14 6 1.1335 -1.2359 -2.1400 15 6 1.5916 -1.8873 -3.2696 16 6 2.9521 -2.0197 -3.4895 17 9 3.3994 -2.6615 -4.5909 18 6 3.8547 -1.4890 -2.5817 19 9 5.1827 -1.6124 -2.7973 20 6 3.3931 -0.8369 -1.4488 21 9 4.2711 -0.3245 -0.5590 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 0.7094 1.1616 3.4844 26 1 0.0719 -1.1366 -1.9680 27 1 0.8879 -2.2976 -3.9787 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259529495.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:23 Heat of formation + Delta-G solvation = -99.594759 kcal Electronic energy + Delta-G solvation = -18620.043691 eV Core-core repulsion = 15121.033390 eV Total energy + Delta-G solvation = -3499.010302 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.72004 -50.07650 -49.40789 -40.37413 -37.69784 -35.54804 -33.53052 -31.56220 -29.83163 -27.55246 -25.25314 -23.99217 -22.73277 -19.70776 -19.32787 -18.85524 -18.31184 -17.66419 -17.22679 -16.81843 -16.44346 -16.36366 -15.91607 -15.55748 -15.39480 -15.29394 -14.60431 -14.15572 -13.78451 -13.53777 -13.29534 -13.05141 -12.85709 -12.76658 -12.72448 -12.55236 -12.23983 -12.02843 -11.65378 -11.22304 -10.61013 -9.87009 -9.71021 -8.22215 -6.41333 -0.21926 -0.14746 1.44008 1.47825 1.53217 2.19695 2.27650 2.29655 2.46199 2.46909 3.07882 3.18454 3.34028 3.51451 3.68173 3.87435 4.20149 4.46709 4.71730 4.85615 4.93431 5.00827 5.06783 5.26192 5.41074 5.60673 5.69679 5.93177 6.11413 6.59713 7.16624 7.31248 8.78598 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.026016 B = 0.007837 C = 0.007398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.996782 B = 3571.963120 C = 3783.741772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.186 3.814 3 C 0.272 3.728 4 N -0.546 5.546 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.034 3.966 8 N -0.895 5.895 9 Si 0.952 3.048 10 H -0.286 1.286 11 H -0.286 1.286 12 H -0.254 1.254 13 C -0.078 4.078 14 C -0.054 4.054 15 C -0.106 4.106 16 C 0.085 3.915 17 F -0.125 7.125 18 C 0.007 3.993 19 F -0.136 7.136 20 C 0.079 3.921 21 F -0.135 7.135 22 H 0.085 0.915 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.267 0.733 26 H 0.192 0.808 27 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.671 -8.852 -10.474 14.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.182 3.818 3 C -0.043 4.043 4 N -0.224 5.224 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.169 4.169 8 N -0.531 5.531 9 Si 0.778 3.222 10 H -0.212 1.212 11 H -0.211 1.211 12 H -0.178 1.178 13 C -0.080 4.080 14 C -0.072 4.072 15 C -0.124 4.124 16 C 0.065 3.935 17 F -0.103 7.103 18 C -0.014 4.014 19 F -0.115 7.115 20 C 0.059 3.941 21 F -0.114 7.114 22 H 0.104 0.896 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.209 0.791 27 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.082 -7.110 -10.345 12.926 hybrid contribution 1.411 -0.327 1.327 1.964 sum -1.671 -7.438 -9.018 11.808 Atomic orbital electron populations 1.21870 0.91455 1.03225 1.02280 1.15115 0.95956 0.79489 0.91242 1.30495 0.90270 0.95024 0.88532 1.80825 1.12991 1.14967 1.13577 1.21006 1.33321 1.12800 0.88978 0.91305 1.25608 0.94329 0.95222 1.01774 1.69933 1.35542 1.22703 1.24882 0.85678 0.78195 0.79744 0.78630 1.21158 1.21105 1.17799 1.20204 0.90326 1.00002 0.97497 1.21467 1.02129 0.93427 0.90176 1.21564 0.91775 0.99595 0.99507 1.17483 0.92709 0.98751 0.84594 1.91527 1.90093 1.78963 1.49766 1.17804 0.78332 1.07686 0.97572 1.91473 1.30648 1.94648 1.94701 1.17671 0.88390 1.00014 0.88039 1.91518 1.68394 1.84736 1.66716 0.89593 0.91454 0.92371 0.92346 0.79102 0.78209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 6.86 71.98 0.49 -4.16 15 2 C 0.19 7.88 0.46 -55.48 -0.03 7.86 15 3 C 0.27 13.53 11.54 89.44 1.03 14.56 15 4 N -0.55 -29.25 18.54 20.01 0.37 -28.88 15 5 C -0.52 -25.01 7.01 25.60 0.18 -24.83 15 6 H 0.07 3.29 7.60 -2.91 -0.02 3.27 15 7 C 0.03 1.67 5.14 84.66 0.44 2.11 15 8 N -0.89 -46.49 10.41 21.45 0.22 -46.27 15 9 Si 0.95 40.45 29.54 68.60 2.03 42.47 15 10 H -0.29 -12.61 7.11 99.48 0.71 -11.90 15 11 H -0.29 -12.09 7.11 99.48 0.71 -11.38 15 12 H -0.25 -10.02 7.11 99.48 0.71 -9.32 15 13 C -0.08 -2.74 4.70 -19.82 -0.09 -2.83 15 14 C -0.05 -1.27 8.97 22.26 0.20 -1.07 15 15 C -0.11 -2.04 10.02 22.31 0.22 -1.82 15 16 C 0.08 2.22 7.31 22.40 0.16 2.39 15 17 F -0.13 -3.18 17.18 44.97 0.77 -2.41 15 18 C 0.01 0.24 7.31 22.44 0.16 0.40 15 19 F -0.14 -4.88 17.10 44.97 0.77 -4.11 15 20 C 0.08 3.05 6.70 22.40 0.15 3.20 15 21 F -0.14 -6.22 15.30 44.97 0.69 -5.53 15 22 H 0.09 2.55 7.51 -2.38 -0.02 2.53 15 23 H 0.07 2.90 6.07 -2.38 -0.01 2.88 15 24 H 0.06 1.69 7.51 -2.39 -0.02 1.68 15 25 H 0.27 13.54 8.31 -92.71 -0.77 12.77 15 26 H 0.19 3.19 5.89 -2.91 -0.02 3.17 15 27 H 0.20 1.92 8.06 -2.91 -0.02 1.89 15 Total: -1.00 -62.34 256.35 9.01 -53.33 By element: Atomic # 1 Polarization: -5.64 SS G_CDS: 1.24 Total: -4.40 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 2.92 Total: -4.20 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: 0.59 Total: -75.15 kcal Atomic # 9 Polarization: -14.28 SS G_CDS: 2.23 Total: -12.05 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Total: -62.34 9.01 -53.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259529495.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.267 kcal (2) G-P(sol) polarization free energy of solvation -62.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds