Wall clock time and date at job start Mon Mar 30 2020 06:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99746 * 2 1 4 4 H 1.48498 * 109.47240 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47385 * 300.00037 * 3 2 1 6 6 H 1.48505 * 109.47232 * 60.00125 * 3 2 1 7 7 C 1.37875 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99610 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47119 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47266 * 54.99713 * 10 9 7 12 12 N 1.46905 * 109.47076 * 294.99928 * 10 9 7 13 13 C 1.53006 * 109.47216 * 175.00155 * 10 9 7 14 14 H 1.09003 * 109.46516 * 299.99626 * 13 10 9 15 15 O 1.42895 * 109.47051 * 59.99957 * 13 10 9 16 16 C 1.50698 * 109.47032 * 179.97438 * 13 10 9 17 17 C 1.38236 * 120.00583 * 265.00094 * 16 13 10 18 18 C 1.38219 * 120.01155 * 180.02562 * 17 16 13 19 19 C 1.38265 * 120.02927 * 359.97187 * 18 17 16 20 20 C 1.38196 * 120.01248 * 0.02562 * 19 18 17 21 21 C 1.38334 * 120.00545 * 85.01737 * 16 13 10 22 22 Cl 1.73595 * 120.01408 * 0.02562 * 21 16 13 23 23 H 0.97000 * 120.00272 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47372 * 59.99689 * 9 7 2 25 25 H 1.08994 * 109.47534 * 299.99619 * 9 7 2 26 26 H 1.00898 * 110.99903 * 176.04985 * 12 10 9 27 27 H 1.00908 * 111.00053 * 300.00106 * 12 10 9 28 28 H 0.96694 * 114.00194 * 59.99872 * 15 13 10 29 29 H 1.08000 * 119.99583 * 0.03602 * 17 16 13 30 30 H 1.07998 * 119.98921 * 179.97438 * 18 17 16 31 31 H 1.07999 * 119.99413 * 179.74837 * 19 18 17 32 32 H 1.08002 * 120.00655 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9296 -3.5551 0.8423 12 7 3.0085 -3.6538 -1.2547 13 6 1.4846 -4.9835 0.1262 14 1 0.9184 -4.9896 1.0577 15 8 0.5877 -5.1236 -0.9774 16 6 2.4639 -6.1290 0.1256 17 6 2.7547 -6.7892 -1.0536 18 6 3.6525 -7.8401 -1.0542 19 6 4.2606 -8.2313 0.1243 20 6 3.9707 -7.5720 1.3037 21 6 3.0717 -6.5201 1.3051 22 17 2.7061 -5.6922 2.7864 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6242 -2.5567 0.8902 26 1 3.7161 -4.3730 -1.2524 27 1 2.3962 -3.7516 -2.0508 28 1 1.0236 -5.1263 -1.8405 29 1 2.2805 -6.4837 -1.9746 30 1 3.8791 -8.3559 -1.9756 31 1 4.9590 -9.0552 0.1238 32 1 4.4455 -7.8779 2.2243 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259612730.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:09 Heat of formation + Delta-G solvation = -39.607484 kcal Electronic energy + Delta-G solvation = -16795.851291 eV Core-core repulsion = 13974.699218 eV Total energy + Delta-G solvation = -2821.152073 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.98459 -37.44212 -36.40586 -34.02673 -32.31656 -31.19535 -30.86988 -28.46207 -26.42474 -23.49133 -22.72905 -21.36884 -19.76184 -17.77001 -16.50740 -16.08066 -15.98971 -15.30223 -15.12676 -14.39527 -14.16889 -13.95110 -13.88340 -13.28617 -12.54632 -12.18967 -11.95945 -11.74011 -11.53718 -11.41866 -11.09802 -10.93425 -10.66457 -10.48069 -10.18540 -10.16185 -9.30527 -9.04758 -8.96906 -8.77766 -8.24640 -7.84309 -5.86102 -3.84644 1.03827 1.12045 2.15753 3.40001 3.47065 3.48617 3.53222 4.52595 4.56556 4.61998 4.69142 4.81089 5.14833 5.21750 5.26761 5.49945 5.52005 5.64044 5.66758 5.85806 6.06422 6.19527 6.27894 6.40402 6.63937 6.86674 7.56376 7.77836 7.80045 7.99470 8.09120 8.15720 8.58773 9.21893 9.76948 11.25629 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.029281 B = 0.005886 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.035136 B = 4756.051251 C = 5053.549599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.050 3.950 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.492 4.492 8 H 0.061 0.939 9 C 0.037 3.963 10 C 0.078 3.922 11 H 0.080 0.920 12 N -0.821 5.821 13 C 0.101 3.899 14 H 0.114 0.886 15 O -0.544 6.544 16 C -0.097 4.097 17 C -0.109 4.109 18 C -0.111 4.111 19 C -0.117 4.117 20 C -0.108 4.108 21 C -0.030 4.030 22 Cl -0.059 7.059 23 H 0.257 0.743 24 H 0.023 0.977 25 H 0.019 0.981 26 H 0.320 0.680 27 H 0.330 0.670 28 H 0.361 0.639 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.386 -17.483 -0.218 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.149 4.149 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.531 4.531 8 H 0.079 0.921 9 C 0.000 4.000 10 C -0.034 4.034 11 H 0.098 0.902 12 N -0.350 5.350 13 C 0.039 3.961 14 H 0.132 0.868 15 O -0.348 6.348 16 C -0.098 4.098 17 C -0.127 4.127 18 C -0.129 4.129 19 C -0.135 4.135 20 C -0.127 4.127 21 C -0.057 4.057 22 Cl -0.030 7.030 23 H 0.066 0.934 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.132 0.868 27 H 0.143 0.857 28 H 0.209 0.791 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.983 -16.548 0.607 17.971 hybrid contribution 0.476 -0.022 -0.386 0.613 sum 7.459 -16.570 0.221 18.173 Atomic orbital electron populations 1.69989 1.05961 1.26133 1.52124 1.25015 0.94780 0.99101 0.96040 0.86558 0.80195 0.84086 0.77254 1.19812 1.21301 1.21384 1.21199 0.93312 0.90189 1.48401 0.92092 1.19052 0.92754 0.90558 0.97651 1.22337 0.96005 0.92668 0.92386 0.90219 1.58733 1.17733 1.54440 1.04085 1.22118 0.90072 0.92572 0.91321 0.86832 1.86703 1.35940 1.96066 1.16126 1.20745 0.98499 0.98371 0.92165 1.20886 0.98336 0.96276 0.97233 1.21186 0.96485 0.96864 0.98390 1.21072 1.00294 1.00091 0.92086 1.21054 0.97362 0.94968 0.99317 1.20774 1.00362 0.96744 0.87815 1.98396 1.93615 1.77756 1.33211 0.93364 0.95887 0.96300 0.86797 0.85677 0.79101 0.85433 0.85466 0.85302 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.29 55.43 0.74 -26.92 16 2 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 3 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 4 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.49 -14.06 8.84 -34.44 -0.30 -14.37 16 8 H 0.06 1.75 7.74 -52.49 -0.41 1.34 16 9 C 0.04 0.95 4.41 -27.88 -0.12 0.83 16 10 C 0.08 1.56 2.62 -67.70 -0.18 1.38 16 11 H 0.08 1.68 7.91 -51.93 -0.41 1.27 16 12 N -0.82 -14.62 8.75 -4.66 -0.04 -14.67 16 13 C 0.10 1.72 2.58 -27.88 -0.07 1.65 16 14 H 0.11 2.11 7.13 -51.93 -0.37 1.74 16 15 O -0.54 -9.30 12.37 -35.23 -0.44 -9.73 16 16 C -0.10 -1.37 4.37 -104.59 -0.46 -1.82 16 17 C -0.11 -1.27 8.35 -39.59 -0.33 -1.60 16 18 C -0.11 -1.08 10.05 -39.58 -0.40 -1.48 16 19 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 20 C -0.11 -1.21 9.83 -39.55 -0.39 -1.60 16 21 C -0.03 -0.41 6.31 -39.49 -0.25 -0.66 16 22 Cl -0.06 -0.85 27.17 -51.86 -1.41 -2.26 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.02 0.63 7.83 -51.93 -0.41 0.23 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.32 4.90 7.45 -39.29 -0.29 4.61 16 27 H 0.33 5.43 7.52 -39.29 -0.30 5.13 16 28 H 0.36 4.92 5.83 45.56 0.27 5.19 16 29 H 0.13 1.28 6.40 -52.49 -0.34 0.94 16 30 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 283.72 15.07 4.28 4.28 Total: -1.00 -32.26 283.72 -7.97 -40.23 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -3.08 Total: 9.52 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -2.99 Total: -17.82 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.70 Total: -41.59 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.44 Total: -9.73 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.41 Total: -2.26 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.26 -7.97 -40.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259612730.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.623 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds