Wall clock time and date at job start Mon Mar 30 2020 06:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99746 * 2 1 4 4 H 1.48498 * 109.47240 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47385 * 300.00037 * 3 2 1 6 6 H 1.48505 * 109.47232 * 60.00125 * 3 2 1 7 7 C 1.37875 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99610 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47119 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47266 * 54.99713 * 10 9 7 12 12 N 1.46905 * 109.47076 * 294.99928 * 10 9 7 13 13 C 1.53006 * 109.47216 * 175.00155 * 10 9 7 14 14 H 1.09003 * 109.46516 * 299.99626 * 13 10 9 15 15 O 1.42895 * 109.47051 * 59.99957 * 13 10 9 16 16 C 1.50698 * 109.47032 * 179.97438 * 13 10 9 17 17 C 1.38236 * 120.00583 * 265.00094 * 16 13 10 18 18 C 1.38219 * 120.01155 * 180.02562 * 17 16 13 19 19 C 1.38265 * 120.02927 * 359.97187 * 18 17 16 20 20 C 1.38196 * 120.01248 * 0.02562 * 19 18 17 21 21 C 1.38334 * 120.00545 * 85.01737 * 16 13 10 22 22 Cl 1.73595 * 120.01408 * 0.02562 * 21 16 13 23 23 H 0.97000 * 120.00272 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47372 * 59.99689 * 9 7 2 25 25 H 1.08994 * 109.47534 * 299.99619 * 9 7 2 26 26 H 1.00898 * 110.99903 * 176.04985 * 12 10 9 27 27 H 1.00908 * 111.00053 * 300.00106 * 12 10 9 28 28 H 0.96694 * 114.00194 * 59.99872 * 15 13 10 29 29 H 1.08000 * 119.99583 * 0.03602 * 17 16 13 30 30 H 1.07998 * 119.98921 * 179.97438 * 18 17 16 31 31 H 1.07999 * 119.99413 * 179.74837 * 19 18 17 32 32 H 1.08002 * 120.00655 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9296 -3.5551 0.8423 12 7 3.0085 -3.6538 -1.2547 13 6 1.4846 -4.9835 0.1262 14 1 0.9184 -4.9896 1.0577 15 8 0.5877 -5.1236 -0.9774 16 6 2.4639 -6.1290 0.1256 17 6 2.7547 -6.7892 -1.0536 18 6 3.6525 -7.8401 -1.0542 19 6 4.2606 -8.2313 0.1243 20 6 3.9707 -7.5720 1.3037 21 6 3.0717 -6.5201 1.3051 22 17 2.7061 -5.6922 2.7864 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6242 -2.5567 0.8902 26 1 3.7161 -4.3730 -1.2524 27 1 2.3962 -3.7516 -2.0508 28 1 1.0236 -5.1263 -1.8405 29 1 2.2805 -6.4837 -1.9746 30 1 3.8791 -8.3559 -1.9756 31 1 4.9590 -9.0552 0.1238 32 1 4.4455 -7.8779 2.2243 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259612730.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:09 Heat of formation + Delta-G solvation = -63.067172 kcal Electronic energy + Delta-G solvation = -16796.868580 eV Core-core repulsion = 13974.699218 eV Total energy + Delta-G solvation = -2822.169361 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.06235 -38.68893 -37.43163 -35.76535 -34.27494 -32.28180 -31.73999 -30.32080 -27.93854 -25.28458 -23.60296 -22.61172 -21.37367 -18.83057 -18.54128 -17.31274 -17.18965 -16.81834 -16.31773 -16.25908 -15.34927 -15.19276 -14.81803 -14.42333 -14.14678 -14.10102 -13.35520 -13.03687 -12.87141 -12.71711 -12.49668 -12.44856 -12.30760 -12.18718 -11.83113 -11.71787 -11.19395 -11.01496 -10.51522 -9.93342 -9.76340 -9.27413 -8.11257 -6.17813 0.14292 0.25200 1.16193 1.41229 1.41462 1.55419 2.46116 2.62285 3.21427 3.33730 3.47988 3.79741 3.83164 4.04949 4.15188 4.30774 4.39685 4.50667 4.58448 4.73924 4.90803 5.03264 5.26214 5.37329 5.43914 5.47274 5.69446 5.84091 5.88437 6.27528 6.43596 6.64198 6.76230 6.96912 7.48635 9.00821 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.029281 B = 0.005886 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.035136 B = 4756.051251 C = 5053.549599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.006 4.006 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.505 4.505 8 H 0.058 0.942 9 C 0.045 3.955 10 C 0.095 3.905 11 H 0.067 0.933 12 N -0.825 5.825 13 C 0.114 3.886 14 H 0.089 0.911 15 O -0.558 6.558 16 C -0.118 4.118 17 C -0.112 4.112 18 C -0.104 4.104 19 C -0.105 4.105 20 C -0.113 4.113 21 C -0.049 4.049 22 Cl -0.081 7.081 23 H 0.259 0.741 24 H -0.002 1.002 25 H -0.016 1.016 26 H 0.339 0.661 27 H 0.338 0.662 28 H 0.376 0.624 29 H 0.141 0.859 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.608 -19.033 -1.397 21.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.203 4.203 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.007 3.993 10 C -0.017 4.017 11 H 0.085 0.915 12 N -0.357 5.357 13 C 0.053 3.947 14 H 0.107 0.893 15 O -0.365 6.365 16 C -0.119 4.119 17 C -0.130 4.130 18 C -0.122 4.122 19 C -0.123 4.123 20 C -0.131 4.131 21 C -0.075 4.075 22 Cl -0.052 7.052 23 H 0.068 0.932 24 H 0.016 0.984 25 H 0.002 0.998 26 H 0.153 0.847 27 H 0.152 0.848 28 H 0.226 0.774 29 H 0.159 0.841 30 H 0.180 0.820 31 H 0.183 0.817 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.225 -18.118 -0.584 20.340 hybrid contribution -0.196 0.352 -0.066 0.408 sum 9.029 -17.766 -0.650 19.939 Atomic orbital electron populations 1.70124 1.07647 1.27191 1.53139 1.25913 0.95653 1.03039 0.95655 0.85454 0.79053 0.79367 0.77453 1.18932 1.20599 1.20824 1.21517 0.93297 0.91548 1.47935 0.92362 1.18847 0.93188 0.92525 0.94708 1.21817 0.94635 0.92246 0.93043 0.91531 1.58575 1.18132 1.55658 1.03322 1.21639 0.90018 0.92623 0.90445 0.89286 1.86659 1.36752 1.96063 1.17047 1.20428 0.99134 0.98590 0.93727 1.21120 0.98711 0.96587 0.96627 1.21605 0.94906 0.95693 0.99949 1.21552 0.99690 0.99983 0.91071 1.21351 0.96637 0.94110 1.01019 1.20999 1.01738 0.97914 0.86887 1.98384 1.93894 1.78424 1.34511 0.93202 0.98360 0.99759 0.84674 0.84760 0.77388 0.84101 0.82020 0.81685 0.83347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.10 13.29 21.45 0.28 -58.82 16 2 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 3 Si 0.96 46.38 29.54 68.60 2.03 48.40 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.50 -29.48 8.84 25.60 0.23 -29.25 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.04 2.41 4.41 29.85 0.13 2.54 16 10 C 0.09 3.88 2.62 44.92 0.12 4.00 16 11 H 0.07 2.90 7.91 -2.39 -0.02 2.88 16 12 N -0.82 -28.96 8.75 -168.65 -1.48 -30.44 16 13 C 0.11 4.02 2.58 29.85 0.08 4.09 16 14 H 0.09 3.52 7.13 -2.39 -0.02 3.50 16 15 O -0.56 -19.37 12.37 -148.98 -1.84 -21.21 16 16 C -0.12 -3.24 4.37 -19.84 -0.09 -3.32 16 17 C -0.11 -2.32 8.35 22.26 0.19 -2.13 16 18 C -0.10 -1.57 10.05 22.27 0.22 -1.34 16 19 C -0.11 -1.54 10.05 22.27 0.22 -1.32 16 20 C -0.11 -2.22 9.83 22.29 0.22 -2.00 16 21 C -0.05 -1.29 6.31 22.33 0.14 -1.15 16 22 Cl -0.08 -2.41 27.17 -2.72 -0.07 -2.48 16 23 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 24 H 0.00 -0.11 7.83 -2.39 -0.02 -0.13 16 25 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 26 H 0.34 9.84 7.45 -89.70 -0.67 9.17 16 27 H 0.34 10.90 7.52 -89.69 -0.67 10.22 16 28 H 0.38 10.06 5.83 -74.06 -0.43 9.63 16 29 H 0.14 2.43 6.40 -2.91 -0.02 2.42 16 30 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 31 H 0.17 1.27 8.06 -2.91 -0.02 1.24 16 32 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -71.67 283.72 0.23 -71.44 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -0.61 Total: 22.91 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 1.92 Total: -29.80 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -1.19 Total: -89.26 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -1.84 Total: -21.21 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Atomic # 17 Polarization: -2.41 SS G_CDS: -0.07 Total: -2.48 kcal Total: -71.67 0.23 -71.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259612730.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.369 kcal (2) G-P(sol) polarization free energy of solvation -71.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds