Wall clock time and date at job start Mon Mar 30 2020 06:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00015 * 2 1 4 4 H 1.48498 * 109.47381 * 270.00061 * 3 2 1 5 5 H 1.48503 * 109.47060 * 29.99819 * 3 2 1 6 6 H 1.48501 * 109.47179 * 149.99819 * 3 2 1 7 7 C 1.37882 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99928 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99937 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47050 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47375 * 54.99891 * 10 9 7 12 12 N 1.46896 * 109.46908 * 294.99684 * 10 9 7 13 13 C 1.52997 * 109.47232 * 174.99758 * 10 9 7 14 14 H 1.09001 * 109.47289 * 60.00075 * 13 10 9 15 15 O 1.42905 * 109.47264 * 299.99908 * 13 10 9 16 16 C 1.50697 * 109.47466 * 179.97438 * 13 10 9 17 17 C 1.38239 * 120.00701 * 94.72095 * 16 13 10 18 18 C 1.38217 * 120.01581 * 179.79480 * 17 16 13 19 19 C 1.38268 * 120.02235 * 0.46393 * 18 17 16 20 20 C 1.38185 * 120.01490 * 359.79237 * 19 18 17 21 21 C 1.38325 * 120.00966 * 275.00490 * 16 13 10 22 22 Cl 1.73603 * 120.01258 * 359.97438 * 21 16 13 23 23 H 0.96996 * 120.00119 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47023 * 59.99622 * 9 7 2 25 25 H 1.09000 * 109.47054 * 299.99534 * 9 7 2 26 26 H 1.00904 * 110.99862 * 176.04955 * 12 10 9 27 27 H 1.00896 * 111.00299 * 299.99662 * 12 10 9 28 28 H 0.96696 * 114.00036 * 299.99911 * 15 13 10 29 29 H 1.08001 * 119.99439 * 0.02562 * 17 16 13 30 30 H 1.07999 * 119.99001 * 180.21436 * 18 17 16 31 31 H 1.08000 * 119.98854 * 179.77136 * 19 18 17 32 32 H 1.08005 * 120.00796 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6365 -0.0001 11 1 3.5873 -3.1754 -0.8422 12 7 3.6325 -3.2935 1.2549 13 6 5.5464 -2.6383 -0.1253 14 1 5.9808 -2.0995 0.7168 15 8 5.9249 -1.9992 -1.3461 16 6 6.0489 -4.0591 -0.1248 17 6 6.2743 -4.7131 -1.3216 18 6 6.7391 -6.0147 -1.3214 19 6 6.9699 -6.6667 -0.1241 20 6 6.7399 -6.0158 1.0729 21 6 6.2790 -4.7111 1.0733 22 17 5.9898 -3.8927 2.5768 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6808 0.8904 25 1 3.8752 -0.6797 -0.8895 26 1 3.9016 -4.2660 1.2524 27 1 4.0231 -2.8124 2.0511 28 1 5.5731 -2.4262 -2.1391 29 1 6.0907 -4.2056 -2.2571 30 1 6.9184 -6.5241 -2.2567 31 1 7.3296 -7.6850 -0.1246 32 1 6.9205 -6.5251 2.0081 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259612732.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:10 Heat of formation + Delta-G solvation = -55.841538 kcal Electronic energy + Delta-G solvation = -16883.535622 eV Core-core repulsion = 14061.679587 eV Total energy + Delta-G solvation = -2821.856034 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.03281 -38.52810 -37.57753 -36.01391 -34.46002 -32.26742 -31.70619 -30.64483 -27.76112 -25.12665 -23.65034 -22.48947 -21.60076 -18.92345 -18.78544 -17.50039 -17.08195 -16.59636 -16.53397 -16.00791 -15.48303 -15.06823 -14.78181 -14.65030 -14.45523 -14.18676 -13.45744 -13.17357 -12.86386 -12.63680 -12.61635 -12.30611 -12.27173 -12.05449 -12.03339 -11.63721 -11.28330 -11.07009 -10.69433 -9.95594 -9.77776 -9.14472 -8.19820 -6.19313 0.11319 0.25471 1.06830 1.36098 1.37660 1.49415 2.40360 2.60591 3.14178 3.37828 3.44563 3.78971 3.93245 4.03126 4.08177 4.18178 4.37870 4.43441 4.62507 4.70743 4.84770 4.95120 5.21667 5.24261 5.34935 5.43761 5.51988 5.71175 5.83160 6.32807 6.49822 6.69800 6.71101 6.89013 7.41708 8.97388 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.030840 B = 0.006247 C = 0.005876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.696149 B = 4481.401044 C = 4763.978216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.256 1.256 7 C -0.494 4.494 8 H 0.037 0.963 9 C 0.002 3.998 10 C 0.097 3.903 11 H 0.067 0.933 12 N -0.831 5.831 13 C 0.117 3.883 14 H 0.094 0.906 15 O -0.559 6.559 16 C -0.121 4.121 17 C -0.111 4.111 18 C -0.107 4.107 19 C -0.107 4.107 20 C -0.111 4.111 21 C -0.053 4.053 22 Cl -0.075 7.075 23 H 0.262 0.738 24 H 0.007 0.993 25 H 0.027 0.973 26 H 0.335 0.665 27 H 0.338 0.662 28 H 0.386 0.614 29 H 0.145 0.855 30 H 0.160 0.840 31 H 0.165 0.835 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.583 -13.865 -0.956 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.195 4.195 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.180 1.180 7 C -0.533 4.533 8 H 0.055 0.945 9 C -0.036 4.036 10 C -0.015 4.015 11 H 0.085 0.915 12 N -0.366 5.366 13 C 0.055 3.945 14 H 0.111 0.889 15 O -0.365 6.365 16 C -0.122 4.122 17 C -0.129 4.129 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.129 4.129 21 C -0.079 4.079 22 Cl -0.046 7.046 23 H 0.071 0.929 24 H 0.025 0.975 25 H 0.046 0.954 26 H 0.149 0.851 27 H 0.154 0.846 28 H 0.236 0.764 29 H 0.163 0.837 30 H 0.178 0.822 31 H 0.182 0.818 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 17.981 -13.095 -0.627 22.253 hybrid contribution 0.389 0.552 0.149 0.692 sum 18.370 -12.543 -0.478 22.249 Atomic orbital electron populations 1.70071 1.08068 1.27558 1.54054 1.25911 0.95517 1.02936 0.95171 0.85755 0.79169 0.79196 0.79005 1.19208 1.21333 1.17989 1.21270 0.91368 0.92871 1.47746 0.94463 1.19477 0.94564 0.93252 0.96270 1.21820 0.90292 0.96231 0.93206 0.91470 1.58693 1.68415 1.05799 1.03650 1.21789 0.95565 0.88890 0.88255 0.88866 1.86567 1.76664 1.57391 1.15916 1.20496 1.01125 0.97171 0.93418 1.21184 0.98929 0.95790 0.96971 1.21627 0.97010 0.93790 1.00045 1.21559 0.98561 1.01386 0.90955 1.21346 0.98790 0.91844 1.00965 1.20966 1.05775 0.95077 0.86107 1.98364 1.94250 1.79331 1.32644 0.92917 0.97459 0.95439 0.85073 0.84614 0.76409 0.83720 0.82250 0.81791 0.83152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.93 13.96 21.45 0.30 -61.63 16 2 C 0.00 -0.01 5.47 84.66 0.46 0.46 16 3 Si 0.94 46.52 27.47 68.60 1.88 48.40 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.26 -12.01 6.54 99.48 0.65 -11.36 16 7 C -0.49 -29.26 9.39 25.60 0.24 -29.02 16 8 H 0.04 2.46 7.99 -2.91 -0.02 2.43 16 9 C 0.00 0.10 3.61 29.85 0.11 0.20 16 10 C 0.10 3.78 2.51 44.91 0.11 3.90 16 11 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 12 N -0.83 -31.97 8.08 -168.69 -1.36 -33.34 16 13 C 0.12 3.72 2.62 29.85 0.08 3.80 16 14 H 0.09 3.19 7.12 -2.39 -0.02 3.18 16 15 O -0.56 -17.20 12.24 -148.98 -1.82 -19.02 16 16 C -0.12 -3.14 4.68 -19.84 -0.09 -3.23 16 17 C -0.11 -2.27 9.30 22.26 0.21 -2.06 16 18 C -0.11 -1.63 10.05 22.27 0.22 -1.41 16 19 C -0.11 -1.53 10.05 22.26 0.22 -1.31 16 20 C -0.11 -2.03 9.83 22.29 0.22 -1.81 16 21 C -0.05 -1.27 5.17 22.32 0.12 -1.16 16 22 Cl -0.07 -1.92 23.65 -2.72 -0.06 -1.99 16 23 H 0.26 15.92 8.31 -92.71 -0.77 15.14 16 24 H 0.01 0.35 7.20 -2.39 -0.02 0.34 16 25 H 0.03 1.31 6.96 -2.39 -0.02 1.29 16 26 H 0.33 11.27 6.44 -89.69 -0.58 10.69 16 27 H 0.34 12.67 6.82 -89.70 -0.61 12.06 16 28 H 0.39 9.02 7.33 -74.06 -0.54 8.48 16 29 H 0.15 2.45 6.41 -2.91 -0.02 2.43 16 30 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 31 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 32 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -72.39 275.72 0.21 -72.18 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.62 Total: 27.03 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 1.90 Total: -31.64 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -1.06 Total: -94.97 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -1.82 Total: -19.02 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.88 Total: 48.40 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.06 Total: -1.99 kcal Total: -72.39 0.21 -72.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259612732.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.341 kcal (2) G-P(sol) polarization free energy of solvation -72.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds