Wall clock time and date at job start Mon Mar 30 2020 06:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86800 * 120.00266 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00354 * 3 2 1 5 5 H 1.48502 * 109.46821 * 29.99741 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99925 * 3 2 1 7 7 C 1.40337 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00264 * 180.27704 * 7 2 1 9 9 C 1.39765 * 119.99558 * 359.97438 * 7 2 1 10 10 N 1.32840 * 125.78026 * 0.02838 * 9 7 2 11 11 C 1.33101 * 108.65438 * 180.02562 * 10 9 7 12 12 Cl 1.73595 * 126.02572 * 180.02562 * 11 10 9 13 13 C 1.36119 * 107.94807 * 359.97438 * 11 10 9 14 14 C 1.50701 * 126.33494 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46850 * 240.00081 * 14 13 11 16 16 C 1.53001 * 109.47252 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.47029 * 59.99674 * 16 15 14 18 18 C 1.53005 * 109.47066 * 300.00251 * 17 16 15 19 19 C 1.52994 * 109.47552 * 119.99942 * 14 13 11 20 20 O 1.34634 * 107.33351 * 359.74046 * 13 11 10 21 21 H 0.96996 * 119.99703 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46482 * 359.97438 * 14 13 11 23 23 H 1.09002 * 109.47013 * 299.99885 * 15 14 13 24 24 H 1.09008 * 109.47330 * 59.99792 * 15 14 13 25 25 H 1.09000 * 109.46498 * 300.00016 * 16 15 14 26 26 H 1.08994 * 109.47158 * 179.97438 * 16 15 14 27 27 H 1.09000 * 109.47265 * 180.02562 * 17 16 15 28 28 H 1.09002 * 109.46836 * 60.00098 * 17 16 15 29 29 H 1.08994 * 109.47319 * 299.99928 * 18 17 16 30 30 H 1.09000 * 109.46727 * 179.97438 * 18 17 16 31 31 H 1.09008 * 109.46994 * 300.00368 * 19 14 13 32 32 H 1.09002 * 109.46942 * 59.99729 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4378 2.6526 0.7000 6 1 3.5379 1.4401 0.7000 7 6 2.0080 -1.2153 -0.0005 8 1 3.0880 -1.2153 0.0040 9 6 1.3092 -2.4257 -0.0005 10 7 -0.0125 -2.5594 -0.0006 11 6 -0.3091 -3.8570 0.0000 12 17 -1.9053 -4.5394 -0.0005 13 6 0.8598 -4.5545 -0.0002 14 6 1.0045 -6.0545 -0.0002 15 6 1.7715 -6.4928 1.2490 16 6 1.9180 -8.0158 1.2493 17 6 2.6844 -8.4548 0.0000 18 6 1.9172 -8.0164 -1.2492 19 6 1.7712 -6.4930 -1.2495 20 8 1.8628 -3.6564 -0.0067 21 1 -0.4849 0.8400 0.0004 22 1 0.0164 -6.5147 0.0004 23 1 2.7596 -6.0325 1.2488 24 1 1.2253 -6.1805 2.1391 25 1 0.9297 -8.4757 1.2497 26 1 2.4648 -8.3280 2.1390 27 1 2.7883 -9.5398 0.0000 28 1 3.6725 -7.9947 -0.0004 29 1 0.9291 -8.4763 -1.2488 30 1 2.4635 -8.3287 -2.1392 31 1 1.2247 -6.1806 -2.1394 32 1 2.7592 -6.0326 -1.2496 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259726436.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:58 Heat of formation + Delta-G solvation = -27.328526 kcal Electronic energy + Delta-G solvation = -16828.351499 eV Core-core repulsion = 14007.731881 eV Total energy + Delta-G solvation = -2820.619617 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.21176 -38.01645 -35.70817 -33.96840 -32.36605 -31.53073 -30.46709 -28.46712 -25.41703 -22.25078 -22.16948 -21.13574 -19.92576 -19.12963 -17.54874 -15.87234 -15.33841 -14.86720 -14.47166 -14.00994 -13.93340 -13.85056 -13.09530 -12.89432 -12.16202 -11.93161 -11.90899 -11.56369 -11.44867 -11.34509 -11.01926 -10.86754 -10.84569 -10.51114 -10.31432 -10.03149 -9.90324 -9.86291 -9.65461 -8.96026 -8.29789 -7.36709 -6.75251 -4.72084 2.78600 2.99204 3.02576 3.06746 3.13711 3.79957 4.21377 4.55647 4.94951 5.05351 5.09944 5.21716 5.47521 5.54850 5.77152 5.78024 5.85899 5.86837 5.87688 6.20849 6.23677 6.35116 6.42538 6.47417 6.57009 6.62172 6.71513 6.81017 6.99161 7.34353 7.71881 8.00112 8.41036 8.60611 9.74859 10.16611 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.006318 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.559401 B = 4430.586123 C = 5123.364735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.721 5.721 2 C 0.074 3.926 3 Si 0.928 3.072 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.430 4.430 8 H 0.096 0.904 9 C 0.342 3.658 10 N -0.532 5.532 11 C 0.085 3.915 12 Cl -0.055 7.055 13 C -0.167 4.167 14 C 0.027 3.973 15 C -0.112 4.112 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.118 4.118 19 C -0.112 4.112 20 O -0.231 6.231 21 H 0.281 0.719 22 H 0.083 0.917 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.770 -9.707 0.008 10.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.152 4.152 3 Si 0.751 3.249 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.114 0.886 9 C 0.159 3.841 10 N -0.264 5.264 11 C -0.067 4.067 12 Cl -0.027 7.027 13 C -0.224 4.224 14 C 0.008 3.992 15 C -0.150 4.150 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.150 4.150 20 O -0.128 6.128 21 H 0.092 0.908 22 H 0.101 0.899 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.027 -9.113 0.009 9.335 hybrid contribution 0.460 0.185 -0.005 0.496 sum 2.487 -8.927 0.004 9.267 Atomic orbital electron populations 1.69992 1.07243 1.28929 1.28307 1.25891 0.95023 1.00903 0.93370 0.85986 0.80058 0.79409 0.79403 1.19141 1.19866 1.18305 1.18170 0.94567 0.85748 1.48010 0.88639 1.21973 0.85714 0.83208 0.93199 1.71181 1.12237 1.12468 1.30544 1.21770 0.84777 0.92437 1.07687 1.98242 1.24152 1.82828 1.97523 1.21915 0.85229 0.91117 1.24106 1.19208 0.99345 0.86000 0.94608 1.21598 1.00946 0.94547 0.97884 1.21548 1.00196 0.96371 0.97432 1.21541 0.99285 0.99792 0.95017 1.21557 1.00196 0.96366 0.97432 1.21604 1.00948 0.94546 0.97878 1.84468 1.35748 1.16640 1.75942 0.90784 0.89912 0.91782 0.92057 0.92174 0.92359 0.92576 0.92079 0.92171 0.92363 0.92060 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.42 11.88 55.57 0.66 -18.76 16 2 C 0.07 1.87 5.50 -17.27 -0.10 1.78 16 3 Si 0.93 18.26 29.56 -169.99 -5.03 13.23 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 7 C -0.43 -11.54 9.45 -38.22 -0.36 -11.90 16 8 H 0.10 2.36 7.85 -52.49 -0.41 1.95 16 9 C 0.34 9.69 7.74 -16.55 -0.13 9.56 16 10 N -0.53 -15.40 9.43 -10.54 -0.10 -15.50 16 11 C 0.09 2.17 7.72 -17.76 -0.14 2.04 16 12 Cl -0.06 -1.18 28.57 -51.86 -1.48 -2.66 16 13 C -0.17 -3.91 5.93 -35.07 -0.21 -4.12 16 14 C 0.03 0.49 2.59 -91.77 -0.24 0.26 16 15 C -0.11 -1.81 5.19 -26.73 -0.14 -1.95 16 16 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 17 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 18 C -0.12 -1.49 5.92 -26.71 -0.16 -1.65 16 19 C -0.11 -1.81 5.19 -26.71 -0.14 -1.95 16 20 O -0.23 -6.04 10.82 3.00 0.03 -6.01 16 21 H 0.28 6.79 8.29 -40.82 -0.34 6.45 16 22 H 0.08 1.44 7.43 -51.93 -0.39 1.06 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 24 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 283.65 15.07 4.27 4.27 Total: -1.00 -29.45 283.65 -7.72 -37.17 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -4.16 Total: -0.61 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -1.92 Total: -11.14 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.56 Total: -34.26 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: 0.03 Total: -6.01 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.48 Total: -2.66 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.45 -7.72 -37.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259726436.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.844 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds