Wall clock time and date at job start Mon Mar 30 2020 06:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86800 * 120.00266 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00354 * 3 2 1 5 5 H 1.48502 * 109.46821 * 29.99741 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99925 * 3 2 1 7 7 C 1.40337 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00264 * 180.27704 * 7 2 1 9 9 C 1.39765 * 119.99558 * 359.97438 * 7 2 1 10 10 N 1.32840 * 125.78026 * 0.02838 * 9 7 2 11 11 C 1.33101 * 108.65438 * 180.02562 * 10 9 7 12 12 Cl 1.73595 * 126.02572 * 180.02562 * 11 10 9 13 13 C 1.36119 * 107.94807 * 359.97438 * 11 10 9 14 14 C 1.50701 * 126.33494 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46850 * 240.00081 * 14 13 11 16 16 C 1.53001 * 109.47252 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.47029 * 59.99674 * 16 15 14 18 18 C 1.53005 * 109.47066 * 300.00251 * 17 16 15 19 19 C 1.52994 * 109.47552 * 119.99942 * 14 13 11 20 20 O 1.34634 * 107.33351 * 359.74046 * 13 11 10 21 21 H 0.96996 * 119.99703 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46482 * 359.97438 * 14 13 11 23 23 H 1.09002 * 109.47013 * 299.99885 * 15 14 13 24 24 H 1.09008 * 109.47330 * 59.99792 * 15 14 13 25 25 H 1.09000 * 109.46498 * 300.00016 * 16 15 14 26 26 H 1.08994 * 109.47158 * 179.97438 * 16 15 14 27 27 H 1.09000 * 109.47265 * 180.02562 * 17 16 15 28 28 H 1.09002 * 109.46836 * 60.00098 * 17 16 15 29 29 H 1.08994 * 109.47319 * 299.99928 * 18 17 16 30 30 H 1.09000 * 109.46727 * 179.97438 * 18 17 16 31 31 H 1.09008 * 109.46994 * 300.00368 * 19 14 13 32 32 H 1.09002 * 109.46942 * 59.99729 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4378 2.6526 0.7000 6 1 3.5379 1.4401 0.7000 7 6 2.0080 -1.2153 -0.0005 8 1 3.0880 -1.2153 0.0040 9 6 1.3092 -2.4257 -0.0005 10 7 -0.0125 -2.5594 -0.0006 11 6 -0.3091 -3.8570 0.0000 12 17 -1.9053 -4.5394 -0.0005 13 6 0.8598 -4.5545 -0.0002 14 6 1.0045 -6.0545 -0.0002 15 6 1.7715 -6.4928 1.2490 16 6 1.9180 -8.0158 1.2493 17 6 2.6844 -8.4548 0.0000 18 6 1.9172 -8.0164 -1.2492 19 6 1.7712 -6.4930 -1.2495 20 8 1.8628 -3.6564 -0.0067 21 1 -0.4849 0.8400 0.0004 22 1 0.0164 -6.5147 0.0004 23 1 2.7596 -6.0325 1.2488 24 1 1.2253 -6.1805 2.1391 25 1 0.9297 -8.4757 1.2497 26 1 2.4648 -8.3280 2.1390 27 1 2.7883 -9.5398 0.0000 28 1 3.6725 -7.9947 -0.0004 29 1 0.9291 -8.4763 -1.2488 30 1 2.4635 -8.3287 -2.1392 31 1 1.2247 -6.1806 -2.1394 32 1 2.7592 -6.0326 -1.2496 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259726436.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:58 Heat of formation + Delta-G solvation = -45.427820 kcal Electronic energy + Delta-G solvation = -16829.136343 eV Core-core repulsion = 14007.731881 eV Total energy + Delta-G solvation = -2821.404462 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.20105 -39.25745 -37.53012 -35.91006 -34.38952 -32.95459 -31.63105 -30.32354 -27.20523 -23.70814 -23.41550 -23.08431 -21.58778 -20.47101 -19.51615 -17.77964 -16.87250 -16.76503 -16.07842 -15.51634 -15.17551 -15.02938 -14.81974 -14.49240 -13.54458 -13.42931 -13.27210 -13.16518 -13.06448 -12.96724 -12.91413 -12.19489 -12.01111 -11.98315 -11.88063 -11.57342 -11.37199 -11.15958 -11.02747 -10.91159 -10.30072 -9.31944 -8.65087 -6.74856 0.93526 1.10710 1.40306 1.51180 1.58887 2.14410 2.26401 2.70100 3.19424 3.73304 3.91368 3.92888 4.24858 4.38844 4.48376 4.52913 4.60570 4.62428 4.66390 4.78116 5.01337 5.07138 5.15822 5.21142 5.27597 5.30593 5.30981 5.46022 5.53267 5.57380 5.77474 6.01303 6.40994 6.60115 7.72834 8.30409 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.006318 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.559401 B = 4430.586123 C = 5123.364735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.029 3.971 3 Si 1.015 2.985 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.249 1.249 7 C -0.459 4.459 8 H 0.107 0.893 9 C 0.308 3.692 10 N -0.570 5.570 11 C 0.046 3.954 12 Cl -0.026 7.026 13 C -0.150 4.150 14 C 0.024 3.976 15 C -0.109 4.109 16 C -0.111 4.111 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.109 4.109 20 O -0.242 6.242 21 H 0.290 0.710 22 H 0.093 0.907 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.672 -10.880 0.016 11.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.192 4.192 3 Si 0.832 3.168 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.172 1.172 7 C -0.494 4.494 8 H 0.125 0.875 9 C 0.125 3.875 10 N -0.304 5.304 11 C -0.104 4.104 12 Cl 0.002 6.998 13 C -0.206 4.206 14 C 0.006 3.994 15 C -0.147 4.147 16 C -0.149 4.149 17 C -0.155 4.155 18 C -0.149 4.149 19 C -0.147 4.147 20 O -0.139 6.139 21 H 0.100 0.900 22 H 0.111 0.889 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.913 -10.338 0.016 10.741 hybrid contribution 0.110 0.438 -0.009 0.451 sum 3.023 -9.900 0.007 10.352 Atomic orbital electron populations 1.70090 1.09355 1.30620 1.29048 1.27083 0.95845 1.04521 0.91799 0.84736 0.78631 0.73537 0.79888 1.18151 1.18851 1.17192 1.18724 0.95399 0.86340 1.48888 0.87546 1.22502 0.86236 0.84166 0.94612 1.71090 1.12775 1.14500 1.32032 1.22153 0.86890 0.91981 1.09369 1.98226 1.21961 1.82107 1.97502 1.22981 0.84271 0.93057 1.20297 1.19508 1.00742 0.82328 0.96849 1.21554 0.99384 0.97634 0.96113 1.21528 1.01466 0.92978 0.98888 1.21559 0.98604 1.01531 0.93769 1.21536 1.01465 0.92969 0.98888 1.21560 0.99385 0.97635 0.96106 1.84464 1.36735 1.16786 1.75926 0.89972 0.88889 0.93327 0.93203 0.90933 0.90584 0.89667 0.92529 0.90930 0.90591 0.93214 0.93320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -42.38 11.88 21.89 0.26 -42.12 16 2 C 0.03 1.50 5.50 85.38 0.47 1.97 16 3 Si 1.01 37.24 29.56 68.60 2.03 39.27 16 4 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 5 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 6 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 7 C -0.46 -25.35 9.45 23.15 0.22 -25.13 16 8 H 0.11 5.38 7.85 -2.91 -0.02 5.36 16 9 C 0.31 18.20 7.74 84.91 0.66 18.86 16 10 N -0.57 -34.32 9.43 -300.23 -2.83 -37.15 16 11 C 0.05 2.41 7.72 84.01 0.65 3.06 16 12 Cl -0.03 -1.11 28.57 -2.72 -0.08 -1.19 16 13 C -0.15 -7.20 5.93 25.19 0.15 -7.05 16 14 C 0.02 0.87 2.59 -11.54 -0.03 0.84 16 15 C -0.11 -3.43 5.19 30.59 0.16 -3.27 16 16 C -0.11 -2.47 5.92 30.60 0.18 -2.29 16 17 C -0.12 -2.35 5.92 30.60 0.18 -2.17 16 18 C -0.11 -2.48 5.92 30.61 0.18 -2.29 16 19 C -0.11 -3.43 5.19 30.61 0.16 -3.28 16 20 O -0.24 -13.16 10.82 -12.17 -0.13 -13.30 16 21 H 0.29 14.26 8.29 -92.71 -0.77 13.50 16 22 H 0.09 3.13 7.43 -2.39 -0.02 3.11 16 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -66.51 283.65 3.34 -63.17 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 1.12 Total: 12.08 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 2.97 Total: -20.75 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -2.57 Total: -79.28 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.13 Total: -13.30 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -66.51 3.34 -63.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259726436.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.740 kcal (2) G-P(sol) polarization free energy of solvation -66.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds