Wall clock time and date at job start Mon Mar 30 2020 06:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99896 * 2 1 4 4 H 1.48500 * 109.47171 * 239.99658 * 3 2 1 5 5 H 1.48501 * 109.46895 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47110 * 119.99846 * 3 2 1 7 7 C 1.37875 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00704 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99899 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.29879 * 59.99800 * 9 7 2 11 11 N 1.46636 * 109.29826 * 300.41989 * 9 7 2 12 12 C 1.47168 * 110.23204 * 187.38094 * 11 9 7 13 13 C 1.52887 * 108.50400 * 71.28011 * 12 11 9 14 14 C 1.50722 * 109.96499 * 309.64827 * 13 12 11 15 15 C 1.38797 * 118.48063 * 196.71158 * 14 13 12 16 16 Cl 1.73601 * 119.81357 * 0.15159 * 15 14 13 17 17 C 1.38146 * 120.37525 * 180.17732 * 15 14 13 18 18 C 1.38217 * 119.84636 * 359.97438 * 17 15 14 19 19 C 1.38237 * 119.84690 * 359.92762 * 18 17 15 20 20 F 1.35100 * 119.81950 * 180.02562 * 19 18 17 21 21 C 1.37785 * 121.66240 * 16.76132 * 14 13 12 22 22 H 0.97000 * 120.00000 * 359.97438 * 1 2 3 23 23 H 1.00893 * 111.00320 * 63.96126 * 11 9 7 24 24 H 1.09002 * 109.63021 * 190.98701 * 12 11 9 25 25 H 1.09005 * 109.62668 * 311.37327 * 12 11 9 26 26 H 1.09006 * 109.38945 * 69.80124 * 13 12 11 27 27 H 1.09003 * 109.38635 * 189.49459 * 13 12 11 28 28 H 1.08010 * 120.08011 * 180.02562 * 17 15 14 29 29 H 1.07996 * 120.07604 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6258 -2.5542 -0.8906 11 7 0.4015 -2.5682 1.1937 12 6 -0.2086 -3.9027 1.3075 13 6 0.8810 -4.9028 1.6951 14 6 2.0646 -4.7573 0.7734 15 6 2.9967 -5.7846 0.7259 16 17 2.7774 -7.1953 1.7135 17 6 4.0984 -5.6905 -0.1023 18 6 4.2737 -4.5676 -0.8889 19 6 3.3451 -3.5445 -0.8443 20 9 3.5168 -2.4474 -1.6138 21 6 2.2367 -3.6381 -0.0117 22 1 -0.4850 0.8400 0.0004 23 1 -0.3048 -1.8479 1.1769 24 1 -0.9818 -3.8875 2.0756 25 1 -0.6478 -4.1873 0.3513 26 1 1.1963 -4.7148 2.7214 27 1 0.4857 -5.9158 1.6194 28 1 4.8206 -6.4929 -0.1358 29 1 5.1338 -4.4900 -1.5375 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259774349.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:21 Heat of formation + Delta-G solvation = -43.701281 kcal Electronic energy + Delta-G solvation = -16932.431467 eV Core-core repulsion = 13987.641569 eV Total energy + Delta-G solvation = -2944.789898 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.68164 -40.79072 -37.82576 -37.05917 -34.88278 -32.66317 -31.95006 -29.82454 -27.50999 -24.69151 -24.27946 -22.75282 -20.59477 -18.96724 -18.03184 -17.55349 -17.30488 -16.51776 -16.27301 -15.90033 -15.63974 -15.05158 -14.63682 -14.41011 -14.23686 -13.85890 -13.54466 -13.33498 -12.88703 -12.80890 -12.62569 -12.45348 -12.13269 -11.98574 -11.85656 -11.35041 -11.12680 -10.66203 -9.70024 -9.40413 -8.89094 -8.19591 -6.26921 0.06087 0.24725 1.14340 1.41435 1.42979 1.50604 2.40067 2.52760 3.07241 3.41815 3.69701 3.76840 3.87263 4.16659 4.24723 4.42858 4.51006 4.61858 4.82339 4.88016 4.92345 5.05463 5.12161 5.18861 5.24684 5.40653 5.73833 5.81786 6.08872 6.53223 6.86283 6.99615 7.41973 8.90468 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.028509 B = 0.008004 C = 0.006620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.924458 B = 3497.242230 C = 4228.833213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.024 3.976 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.253 3.747 10 H -0.029 1.029 11 N -0.684 5.684 12 C 0.044 3.956 13 C -0.066 4.066 14 C -0.056 4.056 15 C -0.055 4.055 16 Cl -0.053 7.053 17 C -0.083 4.083 18 C -0.147 4.147 19 C 0.088 3.912 20 F -0.139 7.139 21 C -0.100 4.100 22 H 0.266 0.734 23 H 0.354 0.646 24 H 0.087 0.913 25 H 0.012 0.988 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.176 0.824 29 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.224 -12.525 1.511 13.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.175 4.175 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.144 3.856 10 H -0.012 1.012 11 N -0.319 5.319 12 C -0.086 4.086 13 C -0.103 4.103 14 C -0.057 4.057 15 C -0.082 4.082 16 Cl -0.024 7.024 17 C -0.102 4.102 18 C -0.166 4.166 19 C 0.069 3.931 20 F -0.117 7.117 21 C -0.101 4.101 22 H 0.076 0.924 23 H 0.177 0.823 24 H 0.106 0.894 25 H 0.030 0.970 26 H 0.105 0.895 27 H 0.117 0.883 28 H 0.193 0.807 29 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.558 -12.621 2.005 13.935 hybrid contribution -0.597 1.403 -0.941 1.792 sum 4.961 -11.217 1.064 12.312 Atomic orbital electron populations 1.69739 1.06990 1.27897 1.51715 1.25647 0.95745 1.02233 0.93869 0.85595 0.78423 0.78891 0.78629 1.20006 1.20494 1.19822 1.21315 0.93031 0.90533 1.50266 0.92486 1.17684 0.89491 0.90753 0.87625 1.01190 1.61039 1.25714 1.03954 1.41149 1.22077 0.96272 0.91091 0.99187 1.20578 0.92042 0.99671 0.98007 1.19506 0.97463 0.91445 0.97293 1.20927 0.98014 0.90204 0.99048 1.98327 1.96962 1.38204 1.68932 1.21059 0.96559 0.98394 0.94155 1.21267 0.99981 0.92620 1.02752 1.18111 0.96489 0.84997 0.93547 1.91490 1.95085 1.52237 1.72901 1.20234 0.96986 0.96278 0.96620 0.92433 0.82349 0.89433 0.96984 0.89489 0.88306 0.80698 0.81372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.36 11.50 21.45 0.25 -52.12 15 2 C 0.02 1.35 5.38 84.65 0.46 1.80 15 3 Si 0.96 44.59 29.54 68.60 2.03 46.62 15 4 H -0.27 -12.61 7.11 99.48 0.71 -11.90 15 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 6 H -0.27 -12.48 7.11 99.48 0.71 -11.78 15 7 C -0.51 -28.97 7.31 25.60 0.19 -28.78 15 8 H 0.06 3.25 6.12 -2.91 -0.02 3.24 15 9 C 0.25 13.27 2.38 43.45 0.10 13.37 15 10 H -0.03 -1.71 8.14 -2.39 -0.02 -1.73 15 11 N -0.68 -33.31 6.43 -499.64 -3.21 -36.53 15 12 C 0.04 1.68 6.58 86.21 0.57 2.25 15 13 C -0.07 -2.20 5.26 29.82 0.16 -2.05 15 14 C -0.06 -2.07 5.77 -19.83 -0.11 -2.19 15 15 C -0.06 -1.65 6.31 22.38 0.14 -1.51 15 16 Cl -0.05 -1.29 27.39 -2.72 -0.07 -1.36 15 17 C -0.08 -2.18 9.82 22.24 0.22 -1.97 15 18 C -0.15 -4.46 10.02 22.26 0.22 -4.23 15 19 C 0.09 3.65 6.72 22.44 0.15 3.80 15 20 F -0.14 -6.41 14.31 44.97 0.64 -5.76 15 21 C -0.10 -4.44 5.46 -19.83 -0.11 -4.55 15 22 H 0.27 14.37 8.31 -92.71 -0.77 13.60 15 23 H 0.35 18.57 6.85 -89.70 -0.61 17.96 15 24 H 0.09 2.90 8.14 -2.39 -0.02 2.88 15 25 H 0.01 0.48 8.05 -2.38 -0.02 0.46 15 26 H 0.09 2.84 8.14 -2.38 -0.02 2.82 15 27 H 0.10 2.73 7.36 -2.39 -0.02 2.72 15 28 H 0.18 3.13 8.06 -2.91 -0.02 3.11 15 29 H 0.17 3.90 8.06 -2.91 -0.02 3.88 15 Total: -1.00 -62.00 258.73 2.19 -59.81 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.58 Total: 13.41 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 1.98 Total: -24.07 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -2.97 Total: -88.64 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 0.64 Total: -5.76 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.07 Total: -1.36 kcal Total: -62.00 2.19 -59.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259774349.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.111 kcal (2) G-P(sol) polarization free energy of solvation -61.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds