Wall clock time and date at job start Mon Mar 30 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00067 * 2 1 4 4 H 1.48493 * 109.47294 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47161 * 300.00072 * 3 2 1 6 6 H 1.48502 * 109.47227 * 59.99814 * 3 2 1 7 7 C 1.37872 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00429 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00140 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.26483 * 300.49326 * 9 7 2 11 11 N 1.46632 * 109.26663 * 59.99568 * 9 7 2 12 12 C 1.47157 * 110.26565 * 172.69664 * 11 9 7 13 13 C 1.52913 * 108.48615 * 288.75557 * 12 11 9 14 14 C 1.50721 * 109.94621 * 50.45644 * 13 12 11 15 15 C 1.38805 * 118.47318 * 163.22877 * 14 13 12 16 16 Cl 1.73604 * 119.81385 * 359.57871 * 15 14 13 17 17 C 1.38143 * 120.37083 * 179.60045 * 15 14 13 18 18 C 1.38215 * 119.84102 * 359.97438 * 17 15 14 19 19 C 1.38234 * 119.85740 * 0.09825 * 18 17 15 20 20 F 1.35105 * 119.82377 * 180.02562 * 19 18 17 21 21 C 1.37779 * 121.66415 * 342.99475 * 14 13 12 22 22 H 0.96998 * 120.00332 * 0.02562 * 1 2 3 23 23 H 1.00901 * 111.00063 * 296.12505 * 11 9 7 24 24 H 1.08993 * 109.63593 * 48.47390 * 12 11 9 25 25 H 1.09005 * 109.63392 * 169.07208 * 12 11 9 26 26 H 1.09001 * 109.38695 * 290.31145 * 13 12 11 27 27 H 1.09001 * 109.31803 * 170.55769 * 13 12 11 28 28 H 1.08004 * 120.07957 * 179.97438 * 17 15 14 29 29 H 1.08006 * 120.06953 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6187 -2.5494 0.8870 11 7 0.4101 -2.5724 -1.1985 12 6 -0.2013 -3.9061 -1.3116 13 6 0.8900 -4.9096 -1.6861 14 6 2.0650 -4.7633 -0.7536 15 6 2.9942 -5.7927 -0.6933 16 17 2.7772 -7.2097 -1.6725 17 6 4.0904 -5.6961 0.1418 18 6 4.2637 -4.5681 0.9215 19 6 3.3385 -3.5428 0.8637 20 9 3.5088 -2.4402 1.6258 21 6 2.2342 -3.6399 0.0260 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2952 -1.8508 -1.1901 24 1 -0.6458 -4.1874 -0.3570 25 1 -0.9680 -3.8931 -2.0863 26 1 1.2154 -4.7250 -2.7100 27 1 0.4913 -5.9212 -1.6100 28 1 4.8103 -6.5001 0.1853 29 1 5.1197 -4.4886 1.5754 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259774351.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:23 Heat of formation + Delta-G solvation = -27.344438 kcal Electronic energy + Delta-G solvation = -16931.287142 eV Core-core repulsion = 13987.206529 eV Total energy + Delta-G solvation = -2944.080612 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.06705 -39.32552 -36.41344 -35.64338 -33.03691 -30.95992 -30.43785 -28.31464 -25.65468 -23.08000 -22.72703 -21.18665 -19.05974 -17.16382 -16.42574 -15.96341 -15.80430 -14.85925 -14.53542 -14.33060 -13.99771 -13.42702 -13.07117 -12.87726 -12.57658 -12.39726 -12.07573 -11.66557 -11.36158 -11.22989 -10.95007 -10.70392 -10.62621 -10.56729 -10.25945 -9.60713 -9.32628 -8.62710 -8.24350 -7.96809 -7.04550 -6.15923 -4.16350 1.47149 1.64154 2.41828 3.28343 3.36211 3.42144 3.91480 4.39900 4.82344 5.03849 5.07188 5.13796 5.47798 5.63044 5.68718 5.85827 5.90721 6.12967 6.22722 6.33404 6.36713 6.50258 6.60909 6.64213 6.86111 7.13277 7.29334 7.83340 7.98023 8.45838 8.87526 8.91242 9.50293 10.95730 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.028565 B = 0.007998 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.981933 B = 3499.929916 C = 4232.571074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.496 4.496 8 H 0.068 0.932 9 C 0.247 3.753 10 H 0.018 0.982 11 N -0.674 5.674 12 C 0.046 3.954 13 C -0.072 4.072 14 C -0.044 4.044 15 C -0.056 4.056 16 Cl -0.083 7.083 17 C -0.102 4.102 18 C -0.163 4.163 19 C 0.121 3.879 20 F -0.117 7.117 21 C -0.062 4.062 22 H 0.264 0.736 23 H 0.368 0.632 24 H 0.020 0.980 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.132 0.868 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.689 -10.544 -0.721 11.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.534 4.534 8 H 0.086 0.914 9 C 0.140 3.860 10 H 0.035 0.965 11 N -0.311 5.311 12 C -0.085 4.085 13 C -0.109 4.109 14 C -0.045 4.045 15 C -0.083 4.083 16 Cl -0.054 7.054 17 C -0.121 4.121 18 C -0.182 4.182 19 C 0.101 3.899 20 F -0.095 7.095 21 C -0.064 4.064 22 H 0.074 0.926 23 H 0.193 0.807 24 H 0.038 0.962 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.150 0.850 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.032 -10.623 -1.203 11.426 hybrid contribution -0.152 0.942 0.733 1.204 sum 3.879 -9.680 -0.470 10.439 Atomic orbital electron populations 1.69657 1.06052 1.27140 1.51377 1.24926 0.94902 0.99382 0.94023 0.86360 0.80186 0.82965 0.77474 1.19623 1.20911 1.21048 1.21165 0.93376 0.88911 1.49988 0.91351 1.17988 0.89354 0.89757 0.88942 0.96478 1.61091 1.26098 1.02203 1.41699 1.21937 0.94980 0.92779 0.98773 1.20573 0.93171 0.99027 0.98151 1.19361 0.96251 0.91470 0.97452 1.20831 0.98571 0.89877 0.98983 1.98312 1.97062 1.39739 1.70285 1.20552 0.96894 0.98223 0.96383 1.20922 1.00492 0.93829 1.02956 1.17678 0.95243 0.84003 0.92983 1.91560 1.94883 1.50395 1.72678 1.20389 0.96394 0.95823 0.93796 0.92569 0.80736 0.96204 0.91763 0.89911 0.91038 0.85000 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.69 11.52 55.43 0.64 -24.05 15 2 C 0.07 1.87 5.38 -17.82 -0.10 1.77 15 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 15 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 7 C -0.50 -13.42 7.29 -34.44 -0.25 -13.67 15 8 H 0.07 1.88 6.14 -52.49 -0.32 1.56 15 9 C 0.25 6.18 2.36 -70.20 -0.17 6.01 15 10 H 0.02 0.49 8.14 -51.93 -0.42 0.07 15 11 N -0.67 -15.85 6.43 -109.27 -0.70 -16.56 15 12 C 0.05 0.88 6.59 -3.73 -0.02 0.85 15 13 C -0.07 -1.25 5.26 -27.92 -0.15 -1.40 15 14 C -0.04 -0.84 5.77 -104.57 -0.60 -1.45 15 15 C -0.06 -0.93 6.31 -39.41 -0.25 -1.18 15 16 Cl -0.08 -1.16 27.38 -51.86 -1.42 -2.58 15 17 C -0.10 -1.54 9.82 -39.62 -0.39 -1.93 15 18 C -0.16 -2.68 10.02 -39.59 -0.40 -3.07 15 19 C 0.12 2.48 6.73 -39.32 -0.26 2.22 15 20 F -0.12 -2.61 14.31 2.25 0.03 -2.58 15 21 C -0.06 -1.36 5.47 -104.57 -0.57 -1.94 15 22 H 0.26 6.90 8.31 -40.82 -0.34 6.56 15 23 H 0.37 9.22 6.87 -39.29 -0.27 8.95 15 24 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 15 25 H 0.06 1.09 8.14 -51.93 -0.42 0.66 15 26 H 0.08 1.43 8.14 -51.93 -0.42 1.01 15 27 H 0.07 1.09 7.35 -51.93 -0.38 0.71 15 28 H 0.13 1.59 8.06 -52.48 -0.42 1.17 15 29 H 0.14 1.82 8.06 -52.48 -0.42 1.40 15 LS Contribution 258.77 15.07 3.90 3.90 Total: -1.00 -27.45 258.77 -8.37 -35.83 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -2.64 Total: 3.56 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -3.16 Total: -13.79 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: -0.06 Total: -40.61 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.03 Total: -2.58 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.42 Total: -2.58 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.45 -8.37 -35.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259774351.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.483 kcal (2) G-P(sol) polarization free energy of solvation -27.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds