Wall clock time and date at job start Mon Mar 30 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00067 * 2 1 4 4 H 1.48493 * 109.47294 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47161 * 300.00072 * 3 2 1 6 6 H 1.48502 * 109.47227 * 59.99814 * 3 2 1 7 7 C 1.37872 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00429 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00140 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.26483 * 300.49326 * 9 7 2 11 11 N 1.46632 * 109.26663 * 59.99568 * 9 7 2 12 12 C 1.47157 * 110.26565 * 172.69664 * 11 9 7 13 13 C 1.52913 * 108.48615 * 288.75557 * 12 11 9 14 14 C 1.50721 * 109.94621 * 50.45644 * 13 12 11 15 15 C 1.38805 * 118.47318 * 163.22877 * 14 13 12 16 16 Cl 1.73604 * 119.81385 * 359.57871 * 15 14 13 17 17 C 1.38143 * 120.37083 * 179.60045 * 15 14 13 18 18 C 1.38215 * 119.84102 * 359.97438 * 17 15 14 19 19 C 1.38234 * 119.85740 * 0.09825 * 18 17 15 20 20 F 1.35105 * 119.82377 * 180.02562 * 19 18 17 21 21 C 1.37779 * 121.66415 * 342.99475 * 14 13 12 22 22 H 0.96998 * 120.00332 * 0.02562 * 1 2 3 23 23 H 1.00901 * 111.00063 * 296.12505 * 11 9 7 24 24 H 1.08993 * 109.63593 * 48.47390 * 12 11 9 25 25 H 1.09005 * 109.63392 * 169.07208 * 12 11 9 26 26 H 1.09001 * 109.38695 * 290.31145 * 13 12 11 27 27 H 1.09001 * 109.31803 * 170.55769 * 13 12 11 28 28 H 1.08004 * 120.07957 * 179.97438 * 17 15 14 29 29 H 1.08006 * 120.06953 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6187 -2.5494 0.8870 11 7 0.4101 -2.5724 -1.1985 12 6 -0.2013 -3.9061 -1.3116 13 6 0.8900 -4.9096 -1.6861 14 6 2.0650 -4.7633 -0.7536 15 6 2.9942 -5.7927 -0.6933 16 17 2.7772 -7.2097 -1.6725 17 6 4.0904 -5.6961 0.1418 18 6 4.2637 -4.5681 0.9215 19 6 3.3385 -3.5428 0.8637 20 9 3.5088 -2.4402 1.6258 21 6 2.2342 -3.6399 0.0260 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2952 -1.8508 -1.1901 24 1 -0.6458 -4.1874 -0.3570 25 1 -0.9680 -3.8931 -2.0863 26 1 1.2154 -4.7250 -2.7100 27 1 0.4913 -5.9212 -1.6100 28 1 4.8103 -6.5001 0.1853 29 1 5.1197 -4.4886 1.5754 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259774351.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:23 Heat of formation + Delta-G solvation = -43.908160 kcal Electronic energy + Delta-G solvation = -16932.005398 eV Core-core repulsion = 13987.206529 eV Total energy + Delta-G solvation = -2944.798869 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.67875 -40.79173 -37.82657 -37.06013 -34.88582 -32.66464 -31.95038 -29.82657 -27.51264 -24.69443 -24.27915 -22.75390 -20.59589 -18.97021 -18.03397 -17.55467 -17.30607 -16.51432 -16.27538 -15.90154 -15.63922 -15.05267 -14.63866 -14.41286 -14.24562 -13.85976 -13.54398 -13.33658 -12.89615 -12.82869 -12.63460 -12.41249 -12.14201 -11.98782 -11.85632 -11.33808 -11.12216 -10.67323 -9.70167 -9.40446 -8.89273 -8.20110 -6.27227 0.06061 0.24637 1.14296 1.39448 1.41519 1.53479 2.39840 2.52642 3.06854 3.41825 3.69644 3.76710 3.87168 4.16742 4.24641 4.42940 4.50918 4.61815 4.82314 4.88145 4.92237 5.05427 5.12145 5.18780 5.24742 5.40483 5.74068 5.81742 6.08624 6.53595 6.86078 6.99093 7.41741 8.90379 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.028565 B = 0.007998 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.981933 B = 3499.929916 C = 4232.571074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.023 3.977 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.252 3.748 10 H -0.029 1.029 11 N -0.684 5.684 12 C 0.044 3.956 13 C -0.066 4.066 14 C -0.056 4.056 15 C -0.055 4.055 16 Cl -0.053 7.053 17 C -0.083 4.083 18 C -0.148 4.148 19 C 0.089 3.911 20 F -0.139 7.139 21 C -0.100 4.100 22 H 0.266 0.734 23 H 0.354 0.646 24 H 0.012 0.988 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.176 0.824 29 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.222 -12.565 -1.456 13.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.176 4.176 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.206 1.206 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.144 3.856 10 H -0.012 1.012 11 N -0.318 5.318 12 C -0.086 4.086 13 C -0.103 4.103 14 C -0.057 4.057 15 C -0.082 4.082 16 Cl -0.024 7.024 17 C -0.102 4.102 18 C -0.166 4.166 19 C 0.069 3.931 20 F -0.117 7.117 21 C -0.101 4.101 22 H 0.075 0.925 23 H 0.176 0.824 24 H 0.030 0.970 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.117 0.883 28 H 0.193 0.807 29 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.570 -12.668 -1.945 13.974 hybrid contribution -0.622 1.418 0.938 1.811 sum 4.947 -11.250 -1.007 12.331 Atomic orbital electron populations 1.69759 1.06989 1.27765 1.51884 1.25648 0.95745 1.02250 0.93917 0.85473 0.78864 0.79448 0.77648 1.19695 1.20242 1.20567 1.21366 0.93034 0.90501 1.49989 0.92496 1.17694 0.89552 0.90749 0.87617 1.01157 1.61033 1.26104 1.03918 1.40783 1.22085 0.96248 0.91075 0.99217 1.20588 0.92160 0.99661 0.97908 1.19508 0.97484 0.91417 0.97300 1.20928 0.98088 0.90087 0.99091 1.98327 1.96975 1.37672 1.69444 1.21057 0.96592 0.98365 0.94140 1.21268 1.00018 0.92550 1.02808 1.18111 0.96527 0.84836 0.93657 1.91490 1.95080 1.51815 1.73317 1.20228 0.97008 0.96265 0.96627 0.92457 0.82399 0.96983 0.89393 0.89469 0.88309 0.80696 0.81380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.38 11.52 21.44 0.25 -52.13 15 2 C 0.02 1.30 5.38 84.65 0.46 1.76 15 3 Si 0.96 44.67 29.54 68.60 2.03 46.69 15 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 15 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 7 C -0.51 -28.82 7.29 25.60 0.19 -28.63 15 8 H 0.06 3.26 6.14 -2.91 -0.02 3.25 15 9 C 0.25 13.23 2.36 43.45 0.10 13.33 15 10 H -0.03 -1.69 8.14 -2.39 -0.02 -1.71 15 11 N -0.68 -33.27 6.43 -499.63 -3.21 -36.48 15 12 C 0.04 1.68 6.59 86.23 0.57 2.24 15 13 C -0.07 -2.21 5.26 29.83 0.16 -2.05 15 14 C -0.06 -2.07 5.77 -19.83 -0.11 -2.19 15 15 C -0.06 -1.65 6.31 22.38 0.14 -1.51 15 16 Cl -0.05 -1.29 27.38 -2.72 -0.07 -1.36 15 17 C -0.08 -2.18 9.82 22.24 0.22 -1.96 15 18 C -0.15 -4.47 10.02 22.26 0.22 -4.25 15 19 C 0.09 3.65 6.73 22.44 0.15 3.80 15 20 F -0.14 -6.40 14.31 44.97 0.64 -5.76 15 21 C -0.10 -4.45 5.47 -19.83 -0.11 -4.55 15 22 H 0.27 14.28 8.31 -92.71 -0.77 13.51 15 23 H 0.35 18.54 6.87 -89.69 -0.62 17.92 15 24 H 0.01 0.48 8.05 -2.39 -0.02 0.46 15 25 H 0.09 2.91 8.14 -2.38 -0.02 2.89 15 26 H 0.09 2.84 8.14 -2.39 -0.02 2.82 15 27 H 0.10 2.73 7.35 -2.39 -0.02 2.71 15 28 H 0.18 3.13 8.06 -2.91 -0.02 3.11 15 29 H 0.17 3.90 8.06 -2.91 -0.02 3.88 15 Total: -1.00 -62.07 258.77 2.18 -59.88 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.57 Total: 13.16 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 1.98 Total: -24.01 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -2.97 Total: -88.61 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 0.64 Total: -5.76 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.07 Total: -1.36 kcal Total: -62.07 2.18 -59.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259774351.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.975 kcal (2) G-P(sol) polarization free energy of solvation -62.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds