Wall clock time and date at job start Mon Mar 30 2020 06:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00006 * 2 1 4 4 H 1.48501 * 109.46997 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47156 * 300.00164 * 3 2 1 6 6 H 1.48495 * 109.46908 * 60.00087 * 3 2 1 7 7 C 1.37881 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99177 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00491 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47085 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47396 * 304.99664 * 10 9 7 12 12 N 1.46905 * 109.47453 * 64.99723 * 10 9 7 13 13 C 1.52997 * 109.47160 * 184.99775 * 10 9 7 14 14 H 1.09001 * 109.47289 * 65.00151 * 13 10 9 15 15 O 1.42905 * 109.47264 * 304.99984 * 13 10 9 16 16 C 1.50697 * 109.47466 * 184.99840 * 13 10 9 17 17 C 1.38261 * 119.99431 * 265.00127 * 16 13 10 18 18 C 1.38222 * 120.02398 * 179.97438 * 17 16 13 19 19 C 1.38228 * 120.01747 * 359.97438 * 18 17 16 20 20 C 1.38337 * 119.98813 * 359.97438 * 19 18 17 21 21 Cl 1.73597 * 120.01671 * 180.02562 * 20 19 18 22 22 C 1.38197 * 119.99209 * 84.72352 * 16 13 10 23 23 H 0.96999 * 120.00239 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47101 * 59.99842 * 9 7 2 25 25 H 1.09006 * 109.47030 * 299.99976 * 9 7 2 26 26 H 1.00901 * 110.99766 * 59.99830 * 12 10 9 27 27 H 1.00891 * 111.00058 * 183.94871 * 12 10 9 28 28 H 0.96696 * 114.00036 * 299.99911 * 15 13 10 29 29 H 1.08001 * 119.99032 * 359.97438 * 17 16 13 30 30 H 1.08000 * 119.98976 * 179.97438 * 18 17 16 31 31 H 1.07999 * 120.01015 * 180.02562 * 19 18 17 32 32 H 1.07997 * 120.00893 * 0.02562 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 1 2.9300 -3.5549 -0.8427 12 7 3.0075 -3.6545 1.2544 13 6 1.4845 -4.9835 -0.1283 14 1 0.9906 -5.0267 -1.0990 15 8 0.5053 -5.0709 0.9088 16 6 2.4508 -6.1333 -0.0049 17 6 2.9848 -6.7124 -1.1412 18 6 3.8715 -7.7667 -1.0287 19 6 4.2254 -8.2425 0.2199 20 6 3.6923 -7.6628 1.3573 21 17 4.1366 -8.2593 2.9258 22 6 2.8074 -6.6050 1.2442 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6240 -2.5575 0.8881 26 1 2.3946 -3.7527 2.0499 27 1 3.7151 -4.3737 1.2522 28 1 0.8744 -5.0388 1.8020 29 1 2.7090 -6.3408 -2.1170 30 1 4.2880 -8.2189 -1.9167 31 1 4.9185 -9.0660 0.3077 32 1 2.3934 -6.1500 2.1318 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259804559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:15 Heat of formation + Delta-G solvation = -41.615597 kcal Electronic energy + Delta-G solvation = -16566.301068 eV Core-core repulsion = 13745.061916 eV Total energy + Delta-G solvation = -2821.239151 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.02369 -37.57610 -36.46624 -34.03787 -32.37298 -31.18132 -30.94184 -28.46920 -26.47593 -23.53936 -22.75765 -21.41922 -19.77312 -17.76034 -16.53720 -16.00502 -15.92796 -15.40903 -15.29147 -14.42480 -14.22563 -13.96633 -13.85568 -13.39519 -12.57521 -12.21117 -12.08884 -11.82431 -11.59535 -11.39277 -11.17095 -11.00748 -10.77826 -10.50727 -10.24120 -10.18536 -9.36465 -9.09129 -8.96753 -8.84463 -8.27815 -7.85820 -5.89286 -3.88112 1.00688 1.09178 1.96472 3.37967 3.45050 3.45897 3.51179 4.49728 4.58312 4.61910 4.64362 4.89722 5.10212 5.18635 5.25290 5.41559 5.48779 5.59876 5.64106 5.82286 6.03400 6.14887 6.19138 6.45773 6.60779 6.80776 7.52727 7.76452 7.78505 7.95652 8.06169 8.12404 8.55101 9.18617 9.73820 11.22328 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.033119 B = 0.004807 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.222552 B = 5823.389898 C = 5990.314595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.050 3.950 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.494 4.494 8 H 0.061 0.939 9 C 0.037 3.963 10 C 0.075 3.925 11 H 0.078 0.922 12 N -0.822 5.822 13 C 0.103 3.897 14 H 0.110 0.890 15 O -0.544 6.544 16 C -0.091 4.091 17 C -0.107 4.107 18 C -0.104 4.104 19 C -0.120 4.120 20 C -0.028 4.028 21 Cl -0.074 7.074 22 C -0.111 4.111 23 H 0.257 0.743 24 H 0.019 0.981 25 H 0.024 0.976 26 H 0.329 0.671 27 H 0.322 0.678 28 H 0.363 0.637 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.302 -17.562 0.794 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.149 4.149 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.533 4.533 8 H 0.079 0.921 9 C 0.000 4.000 10 C -0.037 4.037 11 H 0.096 0.904 12 N -0.351 5.351 13 C 0.042 3.958 14 H 0.128 0.872 15 O -0.349 6.349 16 C -0.092 4.092 17 C -0.125 4.125 18 C -0.122 4.122 19 C -0.138 4.138 20 C -0.055 4.055 21 Cl -0.045 7.045 22 C -0.130 4.130 23 H 0.067 0.933 24 H 0.037 0.963 25 H 0.042 0.958 26 H 0.143 0.857 27 H 0.134 0.866 28 H 0.211 0.789 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.016 -16.776 0.222 18.186 hybrid contribution 0.526 -0.108 0.727 0.904 sum 7.541 -16.884 0.949 18.516 Atomic orbital electron populations 1.69989 1.05969 1.26184 1.52019 1.25020 0.94783 0.99136 0.95987 0.86551 0.80178 0.84048 0.77276 1.19814 1.21380 1.21286 1.21204 0.93314 0.90209 1.48562 0.92092 1.19051 0.92733 0.90506 0.97757 1.22377 0.95966 0.92922 0.92424 0.90435 1.58727 1.17764 1.54642 1.04015 1.22062 0.88441 0.92619 0.92694 0.87192 1.86687 1.34922 1.96362 1.16883 1.20850 0.98102 0.97515 0.92714 1.21146 0.96913 0.95774 0.98674 1.21104 0.97505 0.96630 0.96940 1.21016 1.00841 1.00828 0.91147 1.20859 1.00277 0.97892 0.86449 1.98370 1.91956 1.87598 1.26579 1.20799 0.97890 0.96261 0.98012 0.93335 0.96265 0.95814 0.85701 0.86553 0.78905 0.85068 0.85049 0.85143 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 2 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.49 -13.82 8.84 -34.44 -0.30 -14.13 16 8 H 0.06 1.71 7.74 -52.48 -0.41 1.31 16 9 C 0.04 0.92 4.34 -27.89 -0.12 0.79 16 10 C 0.08 1.42 2.68 -67.71 -0.18 1.24 16 11 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 12 N -0.82 -14.37 8.49 -4.67 -0.04 -14.41 16 13 C 0.10 1.64 3.15 -27.89 -0.09 1.55 16 14 H 0.11 1.75 8.05 -51.93 -0.42 1.34 16 15 O -0.54 -9.14 12.35 -35.23 -0.44 -9.57 16 16 C -0.09 -1.20 4.49 -104.63 -0.47 -1.67 16 17 C -0.11 -1.24 9.68 -39.58 -0.38 -1.62 16 18 C -0.10 -1.03 10.04 -39.59 -0.40 -1.43 16 19 C -0.12 -1.23 9.83 -39.55 -0.39 -1.62 16 20 C -0.03 -0.32 6.32 -39.49 -0.25 -0.57 16 21 Cl -0.07 -0.80 28.96 -51.86 -1.50 -2.30 16 22 C -0.11 -1.36 7.28 -39.55 -0.29 -1.65 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.64 7.73 -51.93 -0.40 0.24 16 26 H 0.33 5.40 7.67 -39.29 -0.30 5.10 16 27 H 0.32 4.92 6.90 -39.30 -0.27 4.65 16 28 H 0.36 5.08 6.06 45.56 0.28 5.36 16 29 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.13 1.48 6.58 -52.49 -0.35 1.14 16 LS Contribution 285.56 15.07 4.30 4.30 Total: -1.00 -31.30 285.56 -8.04 -39.35 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -3.12 Total: 9.84 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -2.97 Total: -17.75 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.70 Total: -40.94 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.44 Total: -9.57 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.30 -8.04 -39.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259804559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.269 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds