Wall clock time and date at job start Mon Mar 30 2020 06:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00006 * 2 1 4 4 H 1.48501 * 109.46997 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47156 * 300.00164 * 3 2 1 6 6 H 1.48495 * 109.46908 * 60.00087 * 3 2 1 7 7 C 1.37881 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99177 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00491 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47085 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47396 * 304.99664 * 10 9 7 12 12 N 1.46905 * 109.47453 * 64.99723 * 10 9 7 13 13 C 1.52997 * 109.47160 * 184.99775 * 10 9 7 14 14 H 1.09001 * 109.47289 * 65.00151 * 13 10 9 15 15 O 1.42905 * 109.47264 * 304.99984 * 13 10 9 16 16 C 1.50697 * 109.47466 * 184.99840 * 13 10 9 17 17 C 1.38261 * 119.99431 * 265.00127 * 16 13 10 18 18 C 1.38222 * 120.02398 * 179.97438 * 17 16 13 19 19 C 1.38228 * 120.01747 * 359.97438 * 18 17 16 20 20 C 1.38337 * 119.98813 * 359.97438 * 19 18 17 21 21 Cl 1.73597 * 120.01671 * 180.02562 * 20 19 18 22 22 C 1.38197 * 119.99209 * 84.72352 * 16 13 10 23 23 H 0.96999 * 120.00239 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47101 * 59.99842 * 9 7 2 25 25 H 1.09006 * 109.47030 * 299.99976 * 9 7 2 26 26 H 1.00901 * 110.99766 * 59.99830 * 12 10 9 27 27 H 1.00891 * 111.00058 * 183.94871 * 12 10 9 28 28 H 0.96696 * 114.00036 * 299.99911 * 15 13 10 29 29 H 1.08001 * 119.99032 * 359.97438 * 17 16 13 30 30 H 1.08000 * 119.98976 * 179.97438 * 18 17 16 31 31 H 1.07999 * 120.01015 * 180.02562 * 19 18 17 32 32 H 1.07997 * 120.00893 * 0.02562 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 1 2.9300 -3.5549 -0.8427 12 7 3.0075 -3.6545 1.2544 13 6 1.4845 -4.9835 -0.1283 14 1 0.9906 -5.0267 -1.0990 15 8 0.5053 -5.0709 0.9088 16 6 2.4508 -6.1333 -0.0049 17 6 2.9848 -6.7124 -1.1412 18 6 3.8715 -7.7667 -1.0287 19 6 4.2254 -8.2425 0.2199 20 6 3.6923 -7.6628 1.3573 21 17 4.1366 -8.2593 2.9258 22 6 2.8074 -6.6050 1.2442 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6240 -2.5575 0.8881 26 1 2.3946 -3.7527 2.0499 27 1 3.7151 -4.3737 1.2522 28 1 0.8744 -5.0388 1.8020 29 1 2.7090 -6.3408 -2.1170 30 1 4.2880 -8.2189 -1.9167 31 1 4.9185 -9.0660 0.3077 32 1 2.3934 -6.1500 2.1318 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259804559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:15 Heat of formation + Delta-G solvation = -63.617086 kcal Electronic energy + Delta-G solvation = -16567.255124 eV Core-core repulsion = 13745.061916 eV Total energy + Delta-G solvation = -2822.193207 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.06898 -38.74545 -37.35168 -35.72189 -34.27559 -32.24908 -31.83013 -30.25775 -27.94386 -25.29095 -23.61987 -22.64326 -21.31774 -18.80244 -18.52482 -17.25181 -17.04071 -16.77567 -16.43493 -16.29797 -15.40644 -15.24684 -14.76305 -14.40048 -14.12306 -14.09555 -13.37644 -13.08341 -12.87515 -12.71224 -12.46846 -12.40544 -12.26982 -12.15301 -11.94030 -11.66252 -11.17543 -11.03544 -10.50062 -9.92856 -9.78451 -9.25010 -8.10163 -6.16255 0.12852 0.21935 1.11274 1.41938 1.43066 1.56204 2.46918 2.57960 3.22968 3.43000 3.47815 3.78846 3.85050 4.06279 4.11948 4.26772 4.32977 4.46256 4.63010 4.73010 4.86846 5.04657 5.19682 5.32369 5.47343 5.50396 5.71835 5.77859 5.90392 6.29445 6.45857 6.63804 6.73904 6.99162 7.50297 9.01683 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.033119 B = 0.004807 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.222552 B = 5823.389898 C = 5990.314595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.006 4.006 3 Si 0.959 3.041 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.504 4.504 8 H 0.058 0.942 9 C 0.043 3.957 10 C 0.089 3.911 11 H 0.073 0.927 12 N -0.828 5.828 13 C 0.115 3.885 14 H 0.104 0.896 15 O -0.561 6.561 16 C -0.106 4.106 17 C -0.114 4.114 18 C -0.097 4.097 19 C -0.115 4.115 20 C -0.038 4.038 21 Cl -0.070 7.070 22 C -0.117 4.117 23 H 0.259 0.741 24 H -0.009 1.009 25 H -0.003 1.003 26 H 0.335 0.665 27 H 0.338 0.662 28 H 0.374 0.626 29 H 0.142 0.858 30 H 0.164 0.836 31 H 0.154 0.846 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.190 -18.677 0.565 20.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.202 4.202 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.006 3.994 10 C -0.023 4.023 11 H 0.091 0.909 12 N -0.360 5.360 13 C 0.053 3.947 14 H 0.122 0.878 15 O -0.368 6.368 16 C -0.106 4.106 17 C -0.132 4.132 18 C -0.115 4.115 19 C -0.133 4.133 20 C -0.065 4.065 21 Cl -0.041 7.041 22 C -0.136 4.136 23 H 0.067 0.933 24 H 0.009 0.991 25 H 0.015 0.985 26 H 0.149 0.851 27 H 0.153 0.847 28 H 0.223 0.777 29 H 0.160 0.840 30 H 0.181 0.819 31 H 0.172 0.828 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.924 -17.910 0.001 20.010 hybrid contribution -0.048 0.163 0.812 0.829 sum 8.876 -17.746 0.813 19.859 Atomic orbital electron populations 1.70120 1.07602 1.27134 1.53233 1.25891 0.95618 1.02959 0.95761 0.85478 0.79074 0.79547 0.77359 1.18961 1.20760 1.20944 1.21548 0.93333 0.91621 1.47774 0.92337 1.18858 0.93208 0.92322 0.95026 1.21936 0.94751 0.92539 0.93057 0.90850 1.58604 1.18171 1.55726 1.03515 1.21746 0.88384 0.92265 0.92258 0.87819 1.86645 1.35930 1.96375 1.17820 1.20510 0.98663 0.97545 0.93912 1.21386 0.97021 0.96190 0.98594 1.21446 0.96387 0.95593 0.98059 1.21381 1.00340 1.00835 0.90749 1.20976 1.00414 0.97917 0.87182 1.98373 1.91862 1.87453 1.26416 1.20819 0.98269 0.96778 0.97725 0.93260 0.99108 0.98465 0.85111 0.84732 0.77694 0.84045 0.81863 0.82806 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.02 13.29 21.45 0.28 -57.74 16 2 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 3 Si 0.96 45.58 29.54 68.60 2.03 47.61 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.50 -28.61 8.84 25.60 0.23 -28.38 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.04 2.23 4.34 29.85 0.13 2.36 16 10 C 0.09 3.42 2.68 44.91 0.12 3.54 16 11 H 0.07 2.86 8.14 -2.39 -0.02 2.85 16 12 N -0.83 -28.65 8.49 -168.68 -1.43 -30.08 16 13 C 0.11 3.66 3.15 29.85 0.09 3.76 16 14 H 0.10 3.37 8.05 -2.39 -0.02 3.36 16 15 O -0.56 -19.18 12.35 -148.98 -1.84 -21.02 16 16 C -0.11 -2.67 4.49 -19.87 -0.09 -2.76 16 17 C -0.11 -2.40 9.68 22.27 0.22 -2.18 16 18 C -0.10 -1.60 10.04 22.26 0.22 -1.38 16 19 C -0.11 -1.98 9.83 22.29 0.22 -1.76 16 20 C -0.04 -0.80 6.32 22.33 0.14 -0.66 16 21 Cl -0.07 -1.38 28.96 -2.72 -0.08 -1.46 16 22 C -0.12 -2.73 7.28 22.29 0.16 -2.56 16 23 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H 0.00 -0.17 7.73 -2.38 -0.02 -0.19 16 26 H 0.33 10.96 7.67 -89.69 -0.69 10.27 16 27 H 0.34 9.95 6.90 -89.70 -0.62 9.33 16 28 H 0.37 10.62 6.06 -74.06 -0.45 10.17 16 29 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 30 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 32 H 0.13 2.88 6.58 -2.91 -0.02 2.86 16 Total: -1.00 -67.38 285.56 0.27 -67.11 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -0.59 Total: 25.51 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 1.90 Total: -29.92 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -1.15 Total: -87.82 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -1.84 Total: -21.02 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -67.38 0.27 -67.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259804559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.492 kcal (2) G-P(sol) polarization free energy of solvation -67.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds