Wall clock time and date at job start Mon Mar 30 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38292 * 119.93888 * 2 1 4 4 C 1.38210 * 120.03769 * 180.29209 * 3 2 1 5 5 Cl 1.73603 * 120.03716 * 179.70491 * 4 3 2 6 6 C 1.38854 * 119.92783 * 359.72979 * 4 3 2 7 7 O 1.35918 * 120.06545 * 180.02562 * 6 4 3 8 8 C 1.38666 * 119.88003 * 359.97438 * 6 4 3 9 9 C 1.38201 * 119.95471 * 0.02562 * 8 6 4 10 10 C 1.50706 * 119.96157 * 180.02562 * 9 8 6 11 11 H 1.08997 * 109.46853 * 174.11982 * 10 9 8 12 12 C 1.50696 * 109.47322 * 54.11669 * 10 9 8 13 13 H 1.08004 * 120.00356 * 301.56895 * 12 10 9 14 14 C 1.37876 * 119.99752 * 121.56702 * 12 10 9 15 15 N 1.31514 * 119.99999 * 185.42630 * 14 12 10 16 16 Si 1.86801 * 120.00297 * 5.42899 * 14 12 10 17 17 H 1.48498 * 109.46898 * 275.14529 * 16 14 12 18 18 H 1.48496 * 109.46850 * 35.14136 * 16 14 12 19 19 H 1.48497 * 109.47218 * 155.14691 * 16 14 12 20 20 C 1.53006 * 109.46842 * 294.11934 * 10 9 8 21 21 N 1.46893 * 109.46838 * 185.50057 * 20 10 9 22 22 H 1.09001 * 109.46991 * 265.20072 * 1 2 3 23 23 H 1.09002 * 109.47064 * 25.20193 * 1 2 3 24 24 H 1.09000 * 109.47227 * 145.19940 * 1 2 3 25 25 H 1.07999 * 119.97574 * 0.02562 * 3 2 1 26 26 H 0.96703 * 114.00219 * 269.97863 * 7 6 4 27 27 H 1.07995 * 120.02468 * 179.97438 * 8 6 4 28 28 H 0.96999 * 120.00114 * 179.97438 * 15 14 12 29 29 H 1.09001 * 109.47297 * 305.50039 * 20 10 9 30 30 H 1.08997 * 109.47075 * 65.49675 * 20 10 9 31 31 H 1.00896 * 111.00404 * 64.84566 * 21 20 10 32 32 H 1.00905 * 111.00141 * 188.79826 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5793 1.2008 -0.0061 5 17 4.4457 2.7052 -0.0138 6 6 4.2742 -0.0014 -0.0066 7 8 5.6333 -0.0023 -0.0120 8 6 3.5789 -1.2012 -0.0003 9 6 2.1969 -1.1978 0.0057 10 6 1.4411 -2.5017 0.0131 11 1 0.3750 -2.3030 0.1225 12 6 1.9147 -3.3504 1.1647 13 1 2.9559 -3.6280 1.2387 14 6 1.0189 -3.7725 2.1240 15 7 1.4480 -4.4219 3.1841 16 14 -0.8044 -3.4223 1.9180 17 1 -1.1083 -2.0626 2.4319 18 1 -1.1637 -3.4994 0.4793 19 1 -1.5904 -4.4262 2.6792 20 6 1.6896 -3.2425 -1.3024 21 7 0.8516 -4.4480 -1.3512 22 1 -0.3633 -0.0860 1.0241 23 1 -0.3633 0.9299 -0.4376 24 1 -0.3634 -0.8439 -0.5865 25 1 1.6559 2.1329 0.0004 26 1 6.0231 -0.0046 -0.8970 27 1 4.1170 -2.1375 -0.0011 28 1 0.8179 -4.7185 3.8592 29 1 1.4382 -2.5911 -2.1394 30 1 2.7398 -3.5271 -1.3663 31 1 -0.1279 -4.2069 -1.3731 32 1 1.0988 -5.0286 -2.1386 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259837978.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:35 Heat of formation + Delta-G solvation = -32.886043 kcal Electronic energy + Delta-G solvation = -16969.949705 eV Core-core repulsion = 14149.089095 eV Total energy + Delta-G solvation = -2820.860609 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.65104 -37.12535 -36.22452 -34.92292 -32.25021 -31.48901 -31.05830 -27.81839 -25.90199 -24.16749 -22.66003 -21.11645 -19.64120 -17.77328 -17.21514 -15.73512 -15.60160 -15.17397 -14.79781 -14.17585 -13.67083 -13.49877 -13.27266 -13.01174 -12.84481 -12.39418 -12.26999 -12.07236 -11.48738 -11.24815 -11.07390 -10.97591 -10.89801 -10.49786 -10.20210 -9.89410 -9.70418 -9.08416 -8.52633 -8.30120 -7.92356 -7.71828 -6.04365 -4.00969 1.54469 1.69399 2.44744 3.28156 3.33473 3.37892 3.96310 4.43707 4.44790 5.09381 5.18491 5.40225 5.41960 5.55273 5.73952 5.90303 5.92896 6.00145 6.12128 6.15501 6.26303 6.46500 6.53588 6.58558 6.79060 6.89159 7.19436 7.27626 7.65928 7.89871 7.96246 8.13819 8.49461 8.97793 9.58174 11.09002 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.025346 B = 0.007067 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.464355 B = 3961.028205 C = 4103.084079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.100 4.100 4 C -0.080 4.080 5 Cl -0.083 7.083 6 C 0.104 3.896 7 O -0.489 6.489 8 C -0.113 4.113 9 C -0.013 4.013 10 C 0.038 3.962 11 H 0.054 0.946 12 C -0.480 4.480 13 H 0.074 0.926 14 C 0.079 3.921 15 N -0.898 5.898 16 Si 0.881 3.119 17 H -0.281 1.281 18 H -0.263 1.263 19 H -0.292 1.292 20 C 0.081 3.919 21 N -0.829 5.829 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.127 0.873 26 H 0.383 0.617 27 H 0.138 0.862 28 H 0.263 0.737 29 H -0.005 1.005 30 H 0.062 0.938 31 H 0.329 0.671 32 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.307 9.483 -10.412 14.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.118 4.118 4 C -0.107 4.107 5 Cl -0.054 7.054 6 C 0.059 3.941 7 O -0.298 6.298 8 C -0.132 4.132 9 C -0.014 4.014 10 C 0.019 3.981 11 H 0.072 0.928 12 C -0.517 4.517 13 H 0.092 0.908 14 C -0.123 4.123 15 N -0.535 5.535 16 Si 0.709 3.291 17 H -0.208 1.208 18 H -0.188 1.188 19 H -0.219 1.219 20 C -0.050 4.050 21 N -0.357 5.357 22 H 0.090 0.910 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.145 0.855 26 H 0.238 0.762 27 H 0.156 0.844 28 H 0.073 0.927 29 H 0.013 0.987 30 H 0.080 0.920 31 H 0.141 0.859 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.597 9.338 -8.900 12.914 hybrid contribution -1.050 0.655 -1.239 1.751 sum -0.452 9.993 -10.140 14.243 Atomic orbital electron populations 1.20827 0.91355 1.02084 1.02739 1.19732 0.96102 0.92009 1.02056 1.20673 0.91263 0.98275 1.01624 1.21127 0.92539 0.85853 1.11204 1.98313 1.77351 1.32445 1.97289 1.18210 0.82906 0.90766 1.02240 1.84872 1.15784 1.96359 1.32771 1.21242 0.94303 0.96821 1.00788 1.20494 0.93320 0.96116 0.91508 1.18491 0.95897 0.88633 0.95112 0.92825 1.20599 0.96859 1.29444 1.04810 0.90813 1.24984 0.98348 0.94456 0.94533 1.69889 1.34818 1.39141 1.09681 0.86864 0.86298 0.77629 0.78274 1.20763 1.18843 1.21909 1.21901 0.97237 0.90028 0.95867 1.58414 1.07245 1.20650 1.49429 0.91023 0.92034 0.91142 0.85543 0.76245 0.84433 0.92724 0.98652 0.91951 0.85870 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 9.15 36.01 0.33 -1.45 16 2 C -0.10 -1.75 5.88 -104.60 -0.62 -2.36 16 3 C -0.10 -1.62 9.46 -39.57 -0.37 -1.99 16 4 C -0.08 -1.34 6.33 -39.36 -0.25 -1.58 16 5 Cl -0.08 -1.21 28.51 -51.86 -1.48 -2.69 16 6 C 0.10 1.82 6.70 -39.20 -0.26 1.55 16 7 O -0.49 -7.60 12.96 -19.48 -0.25 -7.86 16 8 C -0.11 -2.16 8.82 -39.44 -0.35 -2.51 16 9 C -0.01 -0.26 4.77 -104.64 -0.50 -0.76 16 10 C 0.04 0.81 1.84 -92.92 -0.17 0.64 16 11 H 0.05 1.15 2.31 -51.93 -0.12 1.03 16 12 C -0.48 -12.74 8.10 -34.44 -0.28 -13.02 16 13 H 0.07 2.16 7.61 -52.48 -0.40 1.76 16 14 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 15 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 16 Si 0.88 20.94 26.98 -169.99 -4.59 16.36 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.26 -5.69 6.13 56.52 0.35 -5.35 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 20 C 0.08 1.52 5.95 -3.83 -0.02 1.50 16 21 N -0.83 -15.14 9.31 -10.37 -0.10 -15.23 16 22 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 23 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 24 H 0.07 1.10 6.51 -51.93 -0.34 0.76 16 25 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 26 H 0.38 3.98 9.06 45.56 0.41 4.40 16 27 H 0.14 2.69 7.51 -52.49 -0.39 2.29 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 30 H 0.06 1.18 7.97 -51.93 -0.41 0.77 16 31 H 0.33 5.71 8.46 -39.29 -0.33 5.38 16 32 H 0.33 4.88 9.08 -39.29 -0.36 4.53 16 LS Contribution 283.73 15.07 4.28 4.28 Total: -1.00 -30.80 283.73 -6.77 -37.57 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -2.82 Total: 11.85 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -2.59 Total: -17.88 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.68 Total: -41.62 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.25 Total: -7.86 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.59 Total: 16.36 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.48 Total: -2.69 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.80 -6.77 -37.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259837978.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.679 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds