Wall clock time and date at job start Mon Mar 30 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38292 * 119.93888 * 2 1 4 4 C 1.38210 * 120.03769 * 180.29209 * 3 2 1 5 5 Cl 1.73603 * 120.03716 * 179.70491 * 4 3 2 6 6 C 1.38854 * 119.92783 * 359.72979 * 4 3 2 7 7 O 1.35918 * 120.06545 * 180.02562 * 6 4 3 8 8 C 1.38666 * 119.88003 * 359.97438 * 6 4 3 9 9 C 1.38201 * 119.95471 * 0.02562 * 8 6 4 10 10 C 1.50706 * 119.96157 * 180.02562 * 9 8 6 11 11 H 1.08997 * 109.46853 * 174.11982 * 10 9 8 12 12 C 1.50696 * 109.47322 * 54.11669 * 10 9 8 13 13 H 1.08004 * 120.00356 * 301.56895 * 12 10 9 14 14 C 1.37876 * 119.99752 * 121.56702 * 12 10 9 15 15 N 1.31514 * 119.99999 * 185.42630 * 14 12 10 16 16 Si 1.86801 * 120.00297 * 5.42899 * 14 12 10 17 17 H 1.48498 * 109.46898 * 275.14529 * 16 14 12 18 18 H 1.48496 * 109.46850 * 35.14136 * 16 14 12 19 19 H 1.48497 * 109.47218 * 155.14691 * 16 14 12 20 20 C 1.53006 * 109.46842 * 294.11934 * 10 9 8 21 21 N 1.46893 * 109.46838 * 185.50057 * 20 10 9 22 22 H 1.09001 * 109.46991 * 265.20072 * 1 2 3 23 23 H 1.09002 * 109.47064 * 25.20193 * 1 2 3 24 24 H 1.09000 * 109.47227 * 145.19940 * 1 2 3 25 25 H 1.07999 * 119.97574 * 0.02562 * 3 2 1 26 26 H 0.96703 * 114.00219 * 269.97863 * 7 6 4 27 27 H 1.07995 * 120.02468 * 179.97438 * 8 6 4 28 28 H 0.96999 * 120.00114 * 179.97438 * 15 14 12 29 29 H 1.09001 * 109.47297 * 305.50039 * 20 10 9 30 30 H 1.08997 * 109.47075 * 65.49675 * 20 10 9 31 31 H 1.00896 * 111.00404 * 64.84566 * 21 20 10 32 32 H 1.00905 * 111.00141 * 188.79826 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5793 1.2008 -0.0061 5 17 4.4457 2.7052 -0.0138 6 6 4.2742 -0.0014 -0.0066 7 8 5.6333 -0.0023 -0.0120 8 6 3.5789 -1.2012 -0.0003 9 6 2.1969 -1.1978 0.0057 10 6 1.4411 -2.5017 0.0131 11 1 0.3750 -2.3030 0.1225 12 6 1.9147 -3.3504 1.1647 13 1 2.9559 -3.6280 1.2387 14 6 1.0189 -3.7725 2.1240 15 7 1.4480 -4.4219 3.1841 16 14 -0.8044 -3.4223 1.9180 17 1 -1.1083 -2.0626 2.4319 18 1 -1.1637 -3.4994 0.4793 19 1 -1.5904 -4.4262 2.6792 20 6 1.6896 -3.2425 -1.3024 21 7 0.8516 -4.4480 -1.3512 22 1 -0.3633 -0.0860 1.0241 23 1 -0.3633 0.9299 -0.4376 24 1 -0.3634 -0.8439 -0.5865 25 1 1.6559 2.1329 0.0004 26 1 6.0231 -0.0046 -0.8970 27 1 4.1170 -2.1375 -0.0011 28 1 0.8179 -4.7185 3.8592 29 1 1.4382 -2.5911 -2.1394 30 1 2.7398 -3.5271 -1.3663 31 1 -0.1279 -4.2069 -1.3731 32 1 1.0988 -5.0286 -2.1386 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259837978.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:35 Heat of formation + Delta-G solvation = -56.133503 kcal Electronic energy + Delta-G solvation = -16970.957790 eV Core-core repulsion = 14149.089095 eV Total energy + Delta-G solvation = -2821.868695 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.02136 -38.49001 -37.47090 -36.43485 -34.19874 -32.80075 -32.57244 -29.43043 -27.23474 -25.98868 -24.08793 -22.49210 -21.20498 -19.29691 -18.97501 -17.08170 -17.00253 -16.60548 -16.51739 -15.70454 -15.24600 -14.88028 -14.75980 -14.49972 -14.32917 -14.03353 -13.50145 -13.46320 -12.88450 -12.75317 -12.65254 -12.55770 -12.39125 -11.82050 -11.73452 -11.64811 -11.29374 -10.93531 -10.60352 -9.67281 -9.30742 -9.13748 -8.16370 -6.16688 0.18684 0.32172 1.16654 1.38055 1.43746 1.52172 2.45451 2.59437 3.16826 3.25721 3.80526 3.88783 4.10947 4.27856 4.36635 4.49406 4.57789 4.67862 4.75773 4.81717 4.94851 5.02331 5.14237 5.22065 5.27815 5.43993 5.64721 5.79664 5.88413 6.38814 6.53273 6.78475 6.83478 6.89185 7.46696 9.01168 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.025346 B = 0.007067 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.464355 B = 3961.028205 C = 4103.084079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.083 4.083 5 Cl -0.061 7.061 6 C 0.105 3.895 7 O -0.497 6.497 8 C -0.132 4.132 9 C -0.038 4.038 10 C 0.041 3.959 11 H 0.060 0.940 12 C -0.470 4.470 13 H 0.025 0.975 14 C 0.013 3.987 15 N -0.959 5.959 16 Si 0.938 3.062 17 H -0.269 1.269 18 H -0.227 1.227 19 H -0.304 1.304 20 C 0.088 3.912 21 N -0.848 5.848 22 H 0.061 0.939 23 H 0.098 0.902 24 H 0.071 0.929 25 H 0.159 0.841 26 H 0.406 0.594 27 H 0.118 0.882 28 H 0.259 0.741 29 H 0.025 0.975 30 H 0.050 0.950 31 H 0.337 0.663 32 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.155 11.968 -12.320 17.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.103 4.103 3 C -0.110 4.110 4 C -0.110 4.110 5 Cl -0.032 7.032 6 C 0.060 3.940 7 O -0.310 6.310 8 C -0.151 4.151 9 C -0.039 4.039 10 C 0.022 3.978 11 H 0.078 0.922 12 C -0.508 4.508 13 H 0.043 0.957 14 C -0.183 4.183 15 N -0.600 5.600 16 Si 0.763 3.237 17 H -0.195 1.195 18 H -0.150 1.150 19 H -0.231 1.231 20 C -0.044 4.044 21 N -0.379 5.379 22 H 0.080 0.920 23 H 0.117 0.883 24 H 0.089 0.911 25 H 0.176 0.824 26 H 0.264 0.736 27 H 0.136 0.864 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.150 0.850 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.847 11.841 -10.877 16.101 hybrid contribution -0.377 -0.033 -0.710 0.805 sum -1.224 11.808 -11.587 16.589 Atomic orbital electron populations 1.20908 0.89654 1.04217 1.02459 1.19980 0.97426 0.91556 1.01312 1.20996 0.91126 0.98995 0.99920 1.21266 0.93086 0.86420 1.10202 1.98323 1.76992 1.30780 1.97137 1.18176 0.83539 0.90595 1.01702 1.84806 1.14978 1.96273 1.34923 1.21172 0.94537 0.96962 1.02393 1.20362 0.93500 0.96206 0.93818 1.18414 0.96207 0.88941 0.94282 0.92175 1.20806 0.94557 1.29278 1.06157 0.95666 1.25880 1.03509 0.94686 0.94186 1.70077 1.36367 1.42218 1.11336 0.85927 0.80044 0.77508 0.80198 1.19500 1.14958 1.23096 1.21699 0.96870 0.90483 0.95302 1.58351 1.07730 1.20831 1.50975 0.92021 0.88331 0.91063 0.82384 0.73588 0.86429 0.93179 0.95694 0.93108 0.85017 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.20 9.15 71.24 0.65 -2.55 16 2 C -0.10 -3.36 5.88 -19.85 -0.12 -3.47 16 3 C -0.09 -2.67 9.46 22.28 0.21 -2.46 16 4 C -0.08 -2.54 6.33 22.41 0.14 -2.40 16 5 Cl -0.06 -1.61 28.51 -2.72 -0.08 -1.68 16 6 C 0.11 3.57 6.70 22.52 0.15 3.72 16 7 O -0.50 -14.94 12.96 -92.63 -1.20 -16.14 16 8 C -0.13 -5.10 8.82 22.36 0.20 -4.90 16 9 C -0.04 -1.46 4.77 -19.87 -0.09 -1.56 16 10 C 0.04 1.72 1.84 -12.28 -0.02 1.70 16 11 H 0.06 2.45 2.31 -2.39 -0.01 2.44 16 12 C -0.47 -25.78 8.10 25.60 0.21 -25.57 16 13 H 0.03 1.58 7.61 -2.91 -0.02 1.55 16 14 C 0.01 0.74 5.47 84.65 0.46 1.20 16 15 N -0.96 -60.72 13.96 21.45 0.30 -60.42 16 16 Si 0.94 42.87 26.98 68.60 1.85 44.72 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.23 -8.86 6.13 99.48 0.61 -8.25 16 19 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 20 C 0.09 3.19 5.95 86.31 0.51 3.71 16 21 N -0.85 -29.59 9.31 -186.73 -1.74 -31.33 16 22 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.10 1.96 8.05 -2.39 -0.02 1.94 16 24 H 0.07 1.95 6.51 -2.39 -0.02 1.93 16 25 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 26 H 0.41 7.83 9.06 -74.06 -0.67 7.16 16 27 H 0.12 4.89 7.51 -2.91 -0.02 4.87 16 28 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 1.95 7.97 -2.39 -0.02 1.93 16 31 H 0.34 10.76 8.46 -89.70 -0.76 10.00 16 32 H 0.34 9.73 9.08 -89.69 -0.81 8.91 16 Total: -1.00 -68.94 283.73 0.28 -68.66 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -1.16 Total: 28.77 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 2.30 Total: -32.57 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -1.44 Total: -91.75 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -1.20 Total: -16.14 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.85 Total: 44.72 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.68 kcal Total: -68.94 0.28 -68.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259837978.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.526 kcal (2) G-P(sol) polarization free energy of solvation -68.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds