Wall clock time and date at job start Mon Mar 30 2020 06:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38269 * 119.96275 * 2 1 4 4 C 1.38253 * 120.12222 * 180.02562 * 3 2 1 5 5 C 1.38259 * 120.04003 * 359.95743 * 4 3 2 6 6 Cl 1.73593 * 120.03674 * 180.02562 * 5 4 3 7 7 C 1.38819 * 119.92226 * 359.77068 * 5 4 3 8 8 O 1.35921 * 120.06162 * 180.25059 * 7 5 4 9 9 C 1.38150 * 119.95996 * 179.97438 * 2 1 3 10 10 C 1.50701 * 120.02386 * 359.97070 * 9 2 1 11 11 H 1.09002 * 109.46909 * 345.00315 * 10 9 2 12 12 N 1.46903 * 109.47340 * 225.00270 * 10 9 2 13 13 C 1.52997 * 109.47011 * 105.00207 * 10 9 2 14 14 C 1.50706 * 109.47238 * 184.99962 * 13 10 9 15 15 H 1.07999 * 119.99515 * 0.02562 * 14 13 10 16 16 C 1.37870 * 120.00176 * 180.02562 * 14 13 10 17 17 N 1.31520 * 119.99883 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00043 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47293 * 89.99746 * 18 16 14 20 20 H 1.48504 * 109.47104 * 209.99992 * 18 16 14 21 21 H 1.48495 * 109.47249 * 329.99739 * 18 16 14 22 22 H 1.08995 * 109.46948 * 270.01474 * 1 2 3 23 23 H 1.08994 * 109.47333 * 30.01684 * 1 2 3 24 24 H 1.09002 * 109.47020 * 150.02150 * 1 2 3 25 25 H 1.08001 * 119.93941 * 0.02562 * 3 2 1 26 26 H 1.07993 * 119.97962 * 179.97438 * 4 3 2 27 27 H 0.96704 * 114.00219 * 270.25699 * 8 7 5 28 28 H 1.00899 * 110.99867 * 300.00340 * 12 10 9 29 29 H 1.00906 * 110.99759 * 63.95503 * 12 10 9 30 30 H 1.09001 * 109.46832 * 65.00276 * 13 10 9 31 31 H 1.09000 * 109.47611 * 305.00573 * 13 10 9 32 32 H 0.97004 * 119.99507 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1979 0.0000 4 6 3.5801 1.2017 -0.0005 5 6 4.2756 0.0068 -0.0002 6 17 6.0115 0.0117 -0.0002 7 6 3.5840 -1.1969 0.0055 8 8 4.2649 -2.3733 0.0110 9 6 2.1969 -1.1969 0.0005 10 6 1.4431 -2.5018 0.0018 11 1 0.4019 -2.3196 0.2681 12 7 2.0465 -3.4150 0.9815 13 6 1.5107 -3.1311 -1.3911 14 6 0.6561 -4.3721 -1.4237 15 1 0.1183 -4.6807 -0.5395 16 6 0.5610 -5.1133 -2.5823 17 7 1.2164 -4.7378 -3.6589 18 14 -0.4988 -6.6511 -2.6229 19 1 -1.8791 -6.2903 -3.0348 20 1 0.0707 -7.6192 -3.5944 21 1 -0.5303 -7.2663 -1.2717 22 1 -0.3633 0.0003 1.0276 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6560 2.1323 0.0004 26 1 4.1171 2.1387 -0.0010 27 1 4.4653 -2.7159 -0.8708 28 1 3.0126 -3.5997 0.7565 29 1 1.9566 -3.0510 1.9184 30 1 2.5430 -3.3948 -1.6209 31 1 1.1446 -2.4184 -2.1301 32 1 1.1491 -5.2591 -4.4742 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259860022.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:57 Heat of formation + Delta-G solvation = -36.091575 kcal Electronic energy + Delta-G solvation = -16929.539109 eV Core-core repulsion = 14108.539497 eV Total energy + Delta-G solvation = -2820.999612 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.12200 -36.76318 -36.55348 -35.08170 -32.51271 -31.76858 -29.43839 -28.18371 -26.65946 -24.40839 -22.31396 -21.36760 -19.85737 -17.80377 -16.83177 -16.13489 -15.81716 -15.10098 -14.71513 -14.31094 -13.97879 -13.62319 -13.35731 -12.93913 -12.56064 -12.47339 -12.02617 -11.94723 -11.50472 -11.15054 -11.06736 -10.94044 -10.85297 -10.57577 -10.51856 -9.94341 -9.65642 -9.10240 -8.39276 -8.31754 -8.28004 -7.75785 -5.94578 -3.93051 1.21412 1.35474 2.24222 3.36847 3.43319 3.48990 3.60009 4.30806 4.52557 4.86487 5.00300 5.24846 5.36448 5.40161 5.53505 5.63700 5.78196 5.80969 6.02017 6.12425 6.20912 6.27501 6.42527 6.71219 6.76507 6.87738 7.52787 7.62112 7.81964 8.02932 8.12386 8.41571 8.50121 9.12943 9.69372 11.17126 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.026431 B = 0.006274 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.114759 B = 4461.447792 C = 4980.412242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.120 4.120 4 C -0.110 4.110 5 C -0.068 4.068 6 Cl -0.071 7.071 7 C 0.124 3.876 8 O -0.486 6.486 9 C -0.114 4.114 10 C 0.133 3.867 11 H 0.082 0.918 12 N -0.822 5.822 13 C 0.039 3.961 14 C -0.492 4.492 15 H 0.063 0.937 16 C 0.051 3.949 17 N -0.903 5.903 18 Si 0.892 3.108 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.273 1.273 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.129 0.871 26 H 0.130 0.870 27 H 0.398 0.602 28 H 0.349 0.651 29 H 0.316 0.684 30 H 0.013 0.987 31 H 0.017 0.983 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.051 12.073 7.027 14.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.129 4.129 5 C -0.095 4.095 6 Cl -0.042 7.042 7 C 0.078 3.922 8 O -0.297 6.297 9 C -0.117 4.117 10 C 0.021 3.979 11 H 0.100 0.900 12 N -0.355 5.355 13 C 0.002 3.998 14 C -0.531 4.531 15 H 0.081 0.919 16 C -0.149 4.149 17 N -0.544 5.544 18 Si 0.721 3.279 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.198 1.198 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.104 0.896 25 H 0.147 0.853 26 H 0.148 0.852 27 H 0.257 0.743 28 H 0.169 0.831 29 H 0.127 0.873 30 H 0.031 0.969 31 H 0.036 0.964 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.699 11.494 7.185 14.050 hybrid contribution 0.470 0.024 -0.526 0.706 sum 4.169 11.518 6.660 13.942 Atomic orbital electron populations 1.20907 0.90551 1.03850 1.02458 1.19849 0.96734 0.91907 0.97990 1.20962 0.93131 0.97919 1.01860 1.20813 0.94191 0.96200 1.01661 1.21366 0.84514 0.94820 1.08816 1.98342 1.09901 1.98923 1.97041 1.18000 0.89204 0.84312 1.00679 1.84630 1.75418 1.35009 1.34633 1.21712 0.92749 0.98965 0.98320 1.20852 0.96006 0.83960 0.97085 0.89958 1.59040 1.25221 1.47769 1.03448 1.19083 0.97419 0.95522 0.87765 1.21129 1.27103 1.08235 0.96614 0.91897 1.25013 0.96165 0.97888 0.95810 1.69964 1.42961 1.39720 1.01714 0.86582 0.80365 0.83202 0.77771 1.20950 1.21522 1.19807 0.91085 0.91526 0.89646 0.85349 0.85191 0.74283 0.83134 0.87348 0.96878 0.96435 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 9.23 36.01 0.33 -1.26 16 2 C -0.06 -0.96 5.88 -104.64 -0.62 -1.57 16 3 C -0.12 -1.56 9.70 -39.56 -0.38 -1.95 16 4 C -0.11 -1.45 9.83 -39.57 -0.39 -1.84 16 5 C -0.07 -1.02 6.33 -39.36 -0.25 -1.27 16 6 Cl -0.07 -0.98 28.50 -51.86 -1.48 -2.45 16 7 C 0.12 2.06 6.48 -39.19 -0.25 1.80 16 8 O -0.49 -7.88 9.39 -19.49 -0.18 -8.06 16 9 C -0.11 -1.97 4.95 -104.48 -0.52 -2.49 16 10 C 0.13 2.62 2.37 -68.86 -0.16 2.46 16 11 H 0.08 1.62 5.92 -51.93 -0.31 1.32 16 12 N -0.82 -15.83 8.82 -5.65 -0.05 -15.88 16 13 C 0.04 0.96 4.52 -27.88 -0.13 0.83 16 14 C -0.49 -13.55 8.84 -34.44 -0.30 -13.85 16 15 H 0.06 1.74 7.74 -52.49 -0.41 1.34 16 16 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 17 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 18 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 24 H 0.08 1.30 6.39 -51.93 -0.33 0.97 16 25 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 26 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 27 H 0.40 5.89 8.32 45.56 0.38 6.27 16 28 H 0.35 6.68 5.91 -39.29 -0.23 6.44 16 29 H 0.32 5.39 9.06 -39.29 -0.36 5.04 16 30 H 0.01 0.33 7.03 -51.93 -0.36 -0.03 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 283.61 15.07 4.27 4.27 Total: -1.00 -30.08 283.61 -7.35 -37.43 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -2.87 Total: 11.60 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -2.77 Total: -17.79 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.69 Total: -41.76 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.18 Total: -8.06 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.48 Total: -2.45 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.08 -7.35 -37.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259860022.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.341 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds