Wall clock time and date at job start Mon Mar 30 2020 06:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38269 * 119.96275 * 2 1 4 4 C 1.38253 * 120.12222 * 180.02562 * 3 2 1 5 5 C 1.38259 * 120.04003 * 359.95743 * 4 3 2 6 6 Cl 1.73593 * 120.03674 * 180.02562 * 5 4 3 7 7 C 1.38819 * 119.92226 * 359.77068 * 5 4 3 8 8 O 1.35921 * 120.06162 * 180.25059 * 7 5 4 9 9 C 1.38150 * 119.95996 * 179.97438 * 2 1 3 10 10 C 1.50701 * 120.02386 * 359.97070 * 9 2 1 11 11 H 1.09002 * 109.46909 * 345.00315 * 10 9 2 12 12 N 1.46903 * 109.47340 * 225.00270 * 10 9 2 13 13 C 1.52997 * 109.47011 * 105.00207 * 10 9 2 14 14 C 1.50706 * 109.47238 * 184.99962 * 13 10 9 15 15 H 1.07999 * 119.99515 * 0.02562 * 14 13 10 16 16 C 1.37870 * 120.00176 * 180.02562 * 14 13 10 17 17 N 1.31520 * 119.99883 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00043 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47293 * 89.99746 * 18 16 14 20 20 H 1.48504 * 109.47104 * 209.99992 * 18 16 14 21 21 H 1.48495 * 109.47249 * 329.99739 * 18 16 14 22 22 H 1.08995 * 109.46948 * 270.01474 * 1 2 3 23 23 H 1.08994 * 109.47333 * 30.01684 * 1 2 3 24 24 H 1.09002 * 109.47020 * 150.02150 * 1 2 3 25 25 H 1.08001 * 119.93941 * 0.02562 * 3 2 1 26 26 H 1.07993 * 119.97962 * 179.97438 * 4 3 2 27 27 H 0.96704 * 114.00219 * 270.25699 * 8 7 5 28 28 H 1.00899 * 110.99867 * 300.00340 * 12 10 9 29 29 H 1.00906 * 110.99759 * 63.95503 * 12 10 9 30 30 H 1.09001 * 109.46832 * 65.00276 * 13 10 9 31 31 H 1.09000 * 109.47611 * 305.00573 * 13 10 9 32 32 H 0.97004 * 119.99507 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1979 0.0000 4 6 3.5801 1.2017 -0.0005 5 6 4.2756 0.0068 -0.0002 6 17 6.0115 0.0117 -0.0002 7 6 3.5840 -1.1969 0.0055 8 8 4.2649 -2.3733 0.0110 9 6 2.1969 -1.1969 0.0005 10 6 1.4431 -2.5018 0.0018 11 1 0.4019 -2.3196 0.2681 12 7 2.0465 -3.4150 0.9815 13 6 1.5107 -3.1311 -1.3911 14 6 0.6561 -4.3721 -1.4237 15 1 0.1183 -4.6807 -0.5395 16 6 0.5610 -5.1133 -2.5823 17 7 1.2164 -4.7378 -3.6589 18 14 -0.4988 -6.6511 -2.6229 19 1 -1.8791 -6.2903 -3.0348 20 1 0.0707 -7.6192 -3.5944 21 1 -0.5303 -7.2663 -1.2717 22 1 -0.3633 0.0003 1.0276 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6560 2.1323 0.0004 26 1 4.1171 2.1387 -0.0010 27 1 4.4653 -2.7159 -0.8708 28 1 3.0126 -3.5997 0.7565 29 1 1.9566 -3.0510 1.9184 30 1 2.5430 -3.3948 -1.6209 31 1 1.1446 -2.4184 -2.1301 32 1 1.1491 -5.2591 -4.4742 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259860022.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:57 Heat of formation + Delta-G solvation = -56.711195 kcal Electronic energy + Delta-G solvation = -16930.433243 eV Core-core repulsion = 14108.539497 eV Total energy + Delta-G solvation = -2821.893746 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.33929 -37.95256 -37.73060 -36.59665 -34.49718 -32.98106 -30.67115 -30.11584 -27.75915 -26.17303 -23.83666 -22.58297 -21.34545 -19.02940 -18.57154 -17.66491 -17.16015 -16.52636 -16.30954 -15.97628 -15.28365 -14.79927 -14.69607 -14.28896 -14.13976 -13.63273 -13.55964 -13.20310 -13.05993 -12.88032 -12.54707 -12.41950 -12.29828 -12.08678 -11.99882 -11.52607 -11.38560 -11.10697 -10.49519 -9.67959 -9.43715 -9.23300 -8.11346 -6.16579 0.07597 0.19367 1.12148 1.42917 1.44219 1.55806 2.44534 2.49397 3.11827 3.22359 3.72650 3.87803 4.08387 4.20697 4.24132 4.51456 4.54860 4.73160 4.81632 4.84168 5.01587 5.13183 5.17079 5.25216 5.47178 5.53824 5.69931 5.77660 5.87174 6.33543 6.57320 6.62898 6.92108 6.96525 7.49878 9.00001 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.026431 B = 0.006274 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.114759 B = 4461.447792 C = 4980.412242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.071 4.071 3 C -0.112 4.112 4 C -0.101 4.101 5 C -0.080 4.080 6 Cl -0.063 7.063 7 C 0.108 3.892 8 O -0.492 6.492 9 C -0.141 4.141 10 C 0.148 3.852 11 H 0.080 0.920 12 N -0.832 5.832 13 C 0.050 3.950 14 C -0.505 4.505 15 H 0.057 0.943 16 C -0.002 4.002 17 N -0.936 5.936 18 Si 0.957 3.043 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.269 1.269 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.056 0.944 25 H 0.167 0.833 26 H 0.161 0.839 27 H 0.399 0.601 28 H 0.348 0.652 29 H 0.330 0.670 30 H -0.006 1.006 31 H -0.010 1.010 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.620 13.546 7.837 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.072 4.072 3 C -0.130 4.130 4 C -0.119 4.119 5 C -0.107 4.107 6 Cl -0.035 7.035 7 C 0.062 3.938 8 O -0.304 6.304 9 C -0.144 4.144 10 C 0.036 3.964 11 H 0.097 0.903 12 N -0.367 5.367 13 C 0.013 3.987 14 C -0.543 4.543 15 H 0.076 0.924 16 C -0.199 4.199 17 N -0.578 5.578 18 Si 0.783 3.217 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.194 1.194 22 H 0.106 0.894 23 H 0.110 0.890 24 H 0.075 0.925 25 H 0.185 0.815 26 H 0.178 0.822 27 H 0.258 0.742 28 H 0.168 0.832 29 H 0.142 0.858 30 H 0.013 0.987 31 H 0.009 0.991 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.264 12.977 8.014 15.597 hybrid contribution 0.640 -0.357 -0.764 1.059 sum 3.904 12.620 7.249 15.068 Atomic orbital electron populations 1.20923 0.89467 1.03672 1.03506 1.20149 0.97723 0.91933 0.97367 1.21352 0.93160 0.98488 0.99963 1.21244 0.94549 0.96629 0.99522 1.21503 0.85128 0.94925 1.09181 1.98341 1.09186 1.98910 1.97023 1.18155 0.89236 0.84865 1.01513 1.84600 1.75455 1.35475 1.34847 1.21449 0.93098 0.98474 1.01366 1.20389 0.96504 0.85221 0.94287 0.90251 1.58969 1.25205 1.48299 1.04198 1.18861 0.95405 0.94207 0.90259 1.21461 1.27200 1.09263 0.96360 0.92430 1.25830 0.97485 1.01005 0.95542 1.70084 1.44414 1.41044 1.02248 0.85563 0.78904 0.79439 0.77798 1.19983 1.21253 1.19366 0.89377 0.88983 0.92473 0.81541 0.82178 0.74182 0.83213 0.85843 0.98734 0.99148 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 9.23 71.24 0.66 -2.28 16 2 C -0.07 -2.01 5.88 -19.88 -0.12 -2.12 16 3 C -0.11 -2.51 9.70 22.28 0.22 -2.30 16 4 C -0.10 -2.35 9.83 22.28 0.22 -2.13 16 5 C -0.08 -2.29 6.33 22.41 0.14 -2.15 16 6 Cl -0.06 -1.66 28.50 -2.72 -0.08 -1.74 16 7 C 0.11 3.57 6.48 22.52 0.15 3.71 16 8 O -0.49 -16.36 9.39 -92.66 -0.87 -17.23 16 9 C -0.14 -4.84 4.95 -19.77 -0.10 -4.93 16 10 C 0.15 5.96 2.37 44.17 0.10 6.06 16 11 H 0.08 3.20 5.92 -2.39 -0.01 3.18 16 12 N -0.83 -32.45 8.82 -171.80 -1.52 -33.97 16 13 C 0.05 2.54 4.52 29.85 0.13 2.67 16 14 C -0.50 -28.37 8.84 25.60 0.23 -28.14 16 15 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 16 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 17 N -0.94 -56.34 13.29 21.45 0.28 -56.06 16 18 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 22 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.09 1.76 8.08 -2.39 -0.02 1.74 16 24 H 0.06 1.74 6.39 -2.39 -0.02 1.72 16 25 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 26 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 27 H 0.40 12.49 8.32 -74.05 -0.62 11.88 16 28 H 0.35 13.62 5.91 -89.69 -0.53 13.08 16 29 H 0.33 11.22 9.06 -89.69 -0.81 10.40 16 30 H -0.01 -0.30 7.03 -2.39 -0.02 -0.32 16 31 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -64.95 283.61 1.16 -63.79 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -0.78 Total: 29.40 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 2.09 Total: -31.27 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -1.23 Total: -90.03 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.87 Total: -17.23 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.08 Total: -1.74 kcal Total: -64.95 1.16 -63.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259860022.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.079 kcal (2) G-P(sol) polarization free energy of solvation -64.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds