Wall clock time and date at job start Mon Mar 30 2020 06:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00669 * 2 1 4 4 H 1.48498 * 109.47279 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47325 * 300.00654 * 3 2 1 6 6 H 1.48504 * 109.46922 * 60.00250 * 3 2 1 7 7 C 1.37884 * 119.99354 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99882 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00008 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.59269 * 303.00099 * 9 7 2 11 11 C 1.55092 * 110.83406 * 66.02793 * 9 7 2 12 12 C 1.54598 * 102.84998 * 155.84849 * 11 9 7 13 13 C 1.54000 * 105.22213 * 338.15300 * 12 11 9 14 14 N 1.47897 * 107.05672 * 358.72428 * 13 12 11 15 15 C 1.46906 * 110.99555 * 145.84575 * 14 13 12 16 16 C 1.50699 * 109.47317 * 69.87469 * 15 14 13 17 17 C 1.34517 * 125.77882 * 89.71163 * 16 15 14 18 18 C 1.41444 * 106.84305 * 179.85843 * 17 16 15 19 19 Cl 1.73604 * 126.58510 * 180.19167 * 18 17 16 20 20 C 1.34580 * 106.82359 * 0.40502 * 18 17 16 21 21 O 1.34295 * 125.77806 * 270.02706 * 16 15 14 22 22 H 0.96998 * 119.99200 * 359.97438 * 1 2 3 23 23 H 1.09003 * 110.70966 * 37.53848 * 11 9 7 24 24 H 1.09003 * 110.81580 * 274.20940 * 11 9 7 25 25 H 1.09002 * 110.31193 * 219.18658 * 12 11 9 26 26 H 1.09000 * 110.30788 * 97.11602 * 12 11 9 27 27 H 1.09000 * 109.91521 * 118.07714 * 13 12 11 28 28 H 1.08997 * 109.91264 * 239.37252 * 13 12 11 29 29 H 1.09004 * 109.46885 * 189.86932 * 15 14 13 30 30 H 1.08991 * 109.47070 * 309.87158 * 15 14 13 31 31 H 1.08002 * 126.57922 * 359.96767 * 17 16 15 32 32 H 1.08003 * 125.79525 * 179.75292 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3461 0.0006 5 1 1.8906 2.3964 -1.2124 6 1 1.8907 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1943 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 1 0.5782 -2.5534 0.8555 11 6 0.4645 -2.6820 -1.3247 12 6 0.3075 -4.2169 -1.4223 13 6 1.4283 -4.7950 -0.5384 14 7 2.1921 -3.6482 -0.0011 15 6 2.6799 -3.9299 1.3556 16 6 3.7615 -4.9774 1.2932 17 6 5.0777 -4.7412 1.1473 18 6 5.7221 -6.0003 1.1429 19 17 7.4267 -6.2898 0.9877 20 6 4.7593 -6.9311 1.2774 21 8 3.5739 -6.3051 1.3679 22 1 -0.4849 0.8401 0.0004 23 1 1.0371 -2.2985 -2.1692 24 1 -0.5102 -2.1975 -1.2665 25 1 0.4320 -4.5452 -2.4542 26 1 -0.6681 -4.5222 -1.0439 27 1 0.9961 -5.3698 0.2807 28 1 2.0825 -5.4295 -1.1363 29 1 3.0834 -3.0168 1.7936 30 1 1.8563 -4.2942 1.9695 31 1 5.5517 -3.7753 1.0535 32 1 4.9134 -7.9996 1.3074 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259866119.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:16 Heat of formation + Delta-G solvation = 10.641676 kcal Electronic energy + Delta-G solvation = -16698.200795 eV Core-core repulsion = 13879.227689 eV Total energy + Delta-G solvation = -2818.973106 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.48780 -37.95359 -36.59721 -33.05469 -32.60599 -31.89431 -28.99544 -28.16218 -24.96397 -24.16479 -21.68068 -20.69087 -19.77704 -19.61317 -17.24751 -16.55156 -16.06980 -15.09629 -14.79742 -14.39408 -14.13353 -13.48093 -13.37616 -12.92138 -12.50600 -12.34251 -12.27417 -12.00164 -11.51237 -11.14566 -10.93756 -10.71311 -10.64461 -10.57512 -10.20864 -9.86472 -9.64963 -9.39560 -9.03445 -8.48132 -8.32466 -7.47292 -6.07668 -4.09189 1.74986 2.12696 2.59111 3.17156 3.28453 3.36935 3.41717 4.38560 4.77541 5.02731 5.05670 5.25070 5.46714 5.62339 5.68227 5.79384 5.93634 6.01491 6.04195 6.22796 6.31843 6.46561 6.49954 6.59658 6.97293 7.03797 7.20560 7.34322 7.45585 7.75578 7.96326 8.08003 8.41876 8.97009 9.55548 11.02268 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023487 B = 0.005758 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.839991 B = 4861.995540 C = 5745.214180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.501 4.501 8 H 0.065 0.935 9 C 0.206 3.794 10 H 0.016 0.984 11 C -0.100 4.100 12 C -0.137 4.137 13 C 0.038 3.962 14 N -0.510 5.510 15 C 0.129 3.871 16 C 0.031 3.969 17 C -0.192 4.192 18 C -0.125 4.125 19 Cl -0.047 7.047 20 C -0.036 4.036 21 O -0.166 6.166 22 H 0.260 0.740 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.060 0.940 29 H 0.114 0.886 30 H 0.044 0.956 31 H 0.157 0.843 32 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.786 -11.658 2.269 13.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.540 4.540 8 H 0.083 0.917 9 C 0.100 3.900 10 H 0.034 0.966 11 C -0.139 4.139 12 C -0.175 4.175 13 C -0.090 4.090 14 N -0.236 5.236 15 C 0.001 3.999 16 C -0.019 4.019 17 C -0.213 4.213 18 C -0.153 4.153 19 Cl -0.019 7.019 20 C -0.105 4.105 21 O -0.061 6.061 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.132 0.868 30 H 0.062 0.938 31 H 0.175 0.825 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 6.944 -11.572 1.978 13.640 hybrid contribution 0.157 0.614 0.394 0.746 sum 7.101 -10.958 2.372 13.272 Atomic orbital electron populations 1.69967 1.05930 1.26626 1.50640 1.24946 0.94866 0.99162 0.95113 0.86471 0.80191 0.83454 0.77507 1.19632 1.21040 1.21135 1.21015 0.93449 0.89129 1.50365 0.91679 1.20388 0.88609 0.87450 0.93505 0.96645 1.22443 1.01055 0.90733 0.99671 1.22492 0.97026 0.99347 0.98662 1.22789 0.94762 0.93886 0.97571 1.64892 1.36614 1.04743 1.17309 1.20715 0.92909 0.93334 0.92960 1.22743 0.96257 0.80981 1.01957 1.21365 0.92756 0.98083 1.09071 1.21167 0.86229 0.95129 1.12788 1.98320 1.10653 1.96101 1.96790 1.23672 0.81420 0.98098 1.07340 1.84135 1.31625 1.19588 1.70791 0.92988 0.92413 0.90997 0.92683 0.92891 0.95086 0.92163 0.86827 0.93753 0.82493 0.77820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.77 12.40 55.43 0.69 -24.09 16 2 C 0.06 1.63 5.36 -17.82 -0.10 1.54 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.50 -13.24 8.45 -34.44 -0.29 -13.53 16 8 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.21 4.96 2.15 -66.86 -0.14 4.82 16 10 H 0.02 0.41 8.02 -51.93 -0.42 0.00 16 11 C -0.10 -2.29 5.96 -24.79 -0.15 -2.44 16 12 C -0.14 -2.58 6.92 -25.37 -0.18 -2.76 16 13 C 0.04 0.72 6.17 -2.75 -0.02 0.70 16 14 N -0.51 -10.71 4.94 -225.32 -1.11 -11.82 16 15 C 0.13 2.38 5.24 -4.97 -0.03 2.35 16 16 C 0.03 0.52 6.33 -35.62 -0.23 0.30 16 17 C -0.19 -3.07 10.81 -39.68 -0.43 -3.50 16 18 C -0.13 -1.77 6.74 -39.66 -0.27 -2.04 16 19 Cl -0.05 -0.59 29.32 -51.86 -1.52 -2.11 16 20 C -0.04 -0.47 12.08 29.44 0.36 -0.11 16 21 O -0.17 -2.56 10.65 5.58 0.06 -2.50 16 22 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 23 H 0.06 1.38 8.05 -51.93 -0.42 0.96 16 24 H 0.07 1.75 7.66 -51.93 -0.40 1.35 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.03 0.55 7.57 -51.93 -0.39 0.16 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.11 2.13 7.82 -51.93 -0.41 1.73 16 30 H 0.04 0.79 7.81 -51.93 -0.41 0.38 16 31 H 0.16 2.45 8.06 -52.49 -0.42 2.03 16 32 H 0.21 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 287.97 15.07 4.34 4.34 Total: -1.00 -27.61 287.97 -8.13 -35.73 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.10 Total: -0.71 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -1.46 Total: -14.67 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.43 Total: -35.91 kcal Atomic # 8 Polarization: -2.56 SS G_CDS: 0.06 Total: -2.50 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.52 Total: -2.11 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.61 -8.13 -35.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259866119.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.374 kcal (2) G-P(sol) polarization free energy of solvation -27.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds