Wall clock time and date at job start Mon Mar 30 2020 06:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00669 * 2 1 4 4 H 1.48498 * 109.47279 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47325 * 300.00654 * 3 2 1 6 6 H 1.48504 * 109.46922 * 60.00250 * 3 2 1 7 7 C 1.37884 * 119.99354 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99882 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00008 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.59269 * 303.00099 * 9 7 2 11 11 C 1.55092 * 110.83406 * 66.02793 * 9 7 2 12 12 C 1.54598 * 102.84998 * 155.84849 * 11 9 7 13 13 C 1.54000 * 105.22213 * 338.15300 * 12 11 9 14 14 N 1.47897 * 107.05672 * 358.72428 * 13 12 11 15 15 C 1.46906 * 110.99555 * 145.84575 * 14 13 12 16 16 C 1.50699 * 109.47317 * 69.87469 * 15 14 13 17 17 C 1.34517 * 125.77882 * 89.71163 * 16 15 14 18 18 C 1.41444 * 106.84305 * 179.85843 * 17 16 15 19 19 Cl 1.73604 * 126.58510 * 180.19167 * 18 17 16 20 20 C 1.34580 * 106.82359 * 0.40502 * 18 17 16 21 21 O 1.34295 * 125.77806 * 270.02706 * 16 15 14 22 22 H 0.96998 * 119.99200 * 359.97438 * 1 2 3 23 23 H 1.09003 * 110.70966 * 37.53848 * 11 9 7 24 24 H 1.09003 * 110.81580 * 274.20940 * 11 9 7 25 25 H 1.09002 * 110.31193 * 219.18658 * 12 11 9 26 26 H 1.09000 * 110.30788 * 97.11602 * 12 11 9 27 27 H 1.09000 * 109.91521 * 118.07714 * 13 12 11 28 28 H 1.08997 * 109.91264 * 239.37252 * 13 12 11 29 29 H 1.09004 * 109.46885 * 189.86932 * 15 14 13 30 30 H 1.08991 * 109.47070 * 309.87158 * 15 14 13 31 31 H 1.08002 * 126.57922 * 359.96767 * 17 16 15 32 32 H 1.08003 * 125.79525 * 179.75292 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3461 0.0006 5 1 1.8906 2.3964 -1.2124 6 1 1.8907 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1943 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 1 0.5782 -2.5534 0.8555 11 6 0.4645 -2.6820 -1.3247 12 6 0.3075 -4.2169 -1.4223 13 6 1.4283 -4.7950 -0.5384 14 7 2.1921 -3.6482 -0.0011 15 6 2.6799 -3.9299 1.3556 16 6 3.7615 -4.9774 1.2932 17 6 5.0777 -4.7412 1.1473 18 6 5.7221 -6.0003 1.1429 19 17 7.4267 -6.2898 0.9877 20 6 4.7593 -6.9311 1.2774 21 8 3.5739 -6.3051 1.3679 22 1 -0.4849 0.8401 0.0004 23 1 1.0371 -2.2985 -2.1692 24 1 -0.5102 -2.1975 -1.2665 25 1 0.4320 -4.5452 -2.4542 26 1 -0.6681 -4.5222 -1.0439 27 1 0.9961 -5.3698 0.2807 28 1 2.0825 -5.4295 -1.1363 29 1 3.0834 -3.0168 1.7936 30 1 1.8563 -4.2942 1.9695 31 1 5.5517 -3.7753 1.0535 32 1 4.9134 -7.9996 1.3074 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259866119.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:16 Heat of formation + Delta-G solvation = -5.401259 kcal Electronic energy + Delta-G solvation = -16698.896469 eV Core-core repulsion = 13879.227689 eV Total energy + Delta-G solvation = -2819.668780 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.65534 -39.61694 -37.62089 -34.82523 -34.11606 -33.28068 -30.46342 -29.88994 -26.56285 -25.91940 -22.86067 -21.97985 -21.61240 -21.08484 -18.57647 -18.32360 -17.41156 -16.64203 -16.48117 -15.80534 -15.79172 -15.00739 -14.53143 -14.29342 -14.07561 -13.80425 -13.71362 -13.30451 -13.14168 -12.97580 -12.58547 -12.48137 -12.32169 -11.93371 -11.79515 -11.70923 -11.39005 -10.94940 -10.55359 -10.50960 -9.50295 -9.13448 -8.12846 -6.20458 0.61417 1.07449 1.39670 1.42580 1.45560 1.56785 2.00738 2.44203 3.18670 3.43903 3.63410 3.94416 4.06071 4.10221 4.27705 4.34251 4.48980 4.64165 4.74094 4.77774 4.87188 5.01150 5.02822 5.16223 5.21989 5.33210 5.52348 5.61361 5.73447 6.01652 6.12803 6.32123 6.51487 6.90388 7.47598 8.96555 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023487 B = 0.005758 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.839991 B = 4861.995540 C = 5745.214180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.513 4.513 8 H 0.056 0.944 9 C 0.207 3.793 10 H -0.013 1.013 11 C -0.097 4.097 12 C -0.127 4.127 13 C 0.042 3.958 14 N -0.521 5.521 15 C 0.134 3.866 16 C 0.011 3.989 17 C -0.196 4.196 18 C -0.144 4.144 19 Cl -0.033 7.033 20 C -0.011 4.011 21 O -0.171 6.171 22 H 0.262 0.738 23 H 0.040 0.960 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.047 0.953 31 H 0.152 0.848 32 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.826 -13.259 2.122 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.101 3.899 10 H 0.005 0.995 11 C -0.136 4.136 12 C -0.165 4.165 13 C -0.086 4.086 14 N -0.246 5.246 15 C 0.006 3.994 16 C -0.039 4.039 17 C -0.216 4.216 18 C -0.172 4.172 19 Cl -0.004 7.004 20 C -0.080 4.080 21 O -0.067 6.067 22 H 0.071 0.929 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.065 0.935 31 H 0.170 0.830 32 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 7.996 -13.186 1.833 15.530 hybrid contribution -0.092 1.029 0.462 1.132 sum 7.903 -12.157 2.295 14.681 Atomic orbital electron populations 1.70071 1.07121 1.27335 1.51494 1.25655 0.95617 1.02177 0.94893 0.85531 0.79059 0.79690 0.77512 1.19279 1.20784 1.20642 1.21252 0.93180 0.90602 1.50102 0.92579 1.20169 0.88705 0.88136 0.92919 0.99528 1.22249 0.99260 0.93822 0.98294 1.22445 0.97968 0.95873 1.00258 1.22814 0.94713 0.93209 0.97901 1.64792 1.36020 1.04759 1.19070 1.20523 0.93515 0.93736 0.91658 1.22224 0.95697 0.81433 1.04527 1.21476 0.92880 0.98917 1.08353 1.21222 0.87382 0.94605 1.13972 1.98325 1.09390 1.95935 1.96788 1.24527 0.80004 0.99564 1.03861 1.84123 1.32852 1.18847 1.70921 0.92944 0.94094 0.93199 0.90488 0.91432 0.93997 0.90946 0.88203 0.93457 0.83001 0.73504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.18 12.40 21.45 0.27 -51.91 16 2 C 0.02 0.85 5.36 84.66 0.45 1.31 16 3 Si 0.96 43.25 29.54 68.60 2.03 45.27 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.51 -27.75 8.45 25.60 0.22 -27.53 16 8 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.21 10.22 2.15 44.57 0.10 10.32 16 10 H -0.01 -0.70 8.02 -2.39 -0.02 -0.72 16 11 C -0.10 -4.51 5.96 31.85 0.19 -4.32 16 12 C -0.13 -4.62 6.92 31.48 0.22 -4.40 16 13 C 0.04 1.50 6.17 86.45 0.53 2.03 16 14 N -0.52 -21.89 4.94 -866.78 -4.28 -26.17 16 15 C 0.13 4.97 5.24 85.56 0.45 5.42 16 16 C 0.01 0.37 6.33 24.83 0.16 0.53 16 17 C -0.20 -6.07 10.81 22.21 0.24 -5.83 16 18 C -0.14 -3.74 6.74 22.22 0.15 -3.60 16 19 Cl -0.03 -0.75 29.32 -2.72 -0.08 -0.83 16 20 C -0.01 -0.25 12.08 66.98 0.81 0.56 16 21 O -0.17 -4.89 10.65 -2.95 -0.03 -4.92 16 22 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 23 H 0.04 1.99 8.05 -2.39 -0.02 1.97 16 24 H 0.05 2.49 7.66 -2.39 -0.02 2.47 16 25 H 0.08 2.45 8.14 -2.39 -0.02 2.44 16 26 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.04 1.42 7.57 -2.39 -0.02 1.40 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.10 3.90 7.82 -2.39 -0.02 3.88 16 30 H 0.05 1.70 7.81 -2.39 -0.02 1.68 16 31 H 0.15 4.75 8.06 -2.91 -0.02 4.72 16 32 H 0.25 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -59.38 287.97 2.52 -56.85 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 1.11 Total: 7.22 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 3.51 Total: -25.52 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -4.01 Total: -78.08 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.03 Total: -4.92 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -59.38 2.52 -56.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259866119.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.454 kcal (2) G-P(sol) polarization free energy of solvation -59.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds