Wall clock time and date at job start Mon Mar 30 2020 06:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38289 * 119.98038 * 2 1 4 4 C 1.38240 * 120.11473 * 180.27559 * 3 2 1 5 5 C 1.50700 * 119.95742 * 179.77155 * 4 3 2 6 6 H 1.08997 * 109.47508 * 359.97438 * 5 4 3 7 7 C 1.50708 * 109.47007 * 239.97849 * 5 4 3 8 8 H 1.07995 * 119.99913 * 275.09715 * 7 5 4 9 9 C 1.37870 * 119.99741 * 95.09297 * 7 5 4 10 10 N 1.31513 * 120.00376 * 5.50592 * 9 7 5 11 11 Si 1.86800 * 120.00112 * 185.50383 * 9 7 5 12 12 H 1.48507 * 109.46753 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47239 * 119.99833 * 11 9 7 14 14 H 1.48492 * 109.47414 * 240.00470 * 11 9 7 15 15 C 1.52997 * 109.46919 * 119.98466 * 5 4 3 16 16 N 1.46903 * 109.47198 * 185.34537 * 15 5 4 17 17 C 1.38197 * 120.07605 * 359.75077 * 4 3 2 18 18 C 1.38659 * 119.95881 * 0.02562 * 17 4 3 19 19 O 1.35921 * 120.05975 * 179.97438 * 18 17 4 20 20 C 1.38214 * 119.97416 * 179.77257 * 2 1 3 21 21 Cl 1.73599 * 120.03818 * 0.02562 * 20 2 1 22 22 H 1.09001 * 109.46960 * 270.23060 * 1 2 3 23 23 H 1.09006 * 109.47006 * 30.22560 * 1 2 3 24 24 H 1.08998 * 109.47862 * 150.22429 * 1 2 3 25 25 H 1.07991 * 119.94207 * 0.02562 * 3 2 1 26 26 H 0.97002 * 120.00632 * 179.97438 * 10 9 7 27 27 H 1.09002 * 109.47140 * 305.33959 * 15 5 4 28 28 H 1.08999 * 109.47808 * 65.34493 * 15 5 4 29 29 H 1.00909 * 110.99904 * 56.04269 * 16 15 5 30 30 H 1.00901 * 111.00290 * 179.97438 * 16 15 5 31 31 H 1.08004 * 120.01761 * 179.97438 * 17 4 3 32 32 H 0.96706 * 114.00139 * 270.02041 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1979 0.0000 4 6 3.5804 1.2011 -0.0058 5 6 4.3299 2.5085 -0.0109 6 1 3.6191 3.3348 -0.0098 7 6 5.1913 2.5888 -1.2449 8 1 6.1747 2.1423 -1.2470 9 6 4.7240 3.2323 -2.3712 10 7 3.5737 3.8688 -2.3352 11 14 5.7246 3.2000 -3.9482 12 1 6.9706 2.4225 -3.7280 13 1 4.9279 2.5624 -5.0270 14 1 6.0708 4.5889 -4.3433 15 6 5.2141 2.5944 1.2347 16 7 5.8461 3.9191 1.2962 17 6 4.2758 0.0068 -0.0063 18 6 3.5861 -1.1960 -0.0016 19 8 4.2680 -2.3718 -0.0027 20 6 2.1975 -1.1973 0.0048 21 17 1.3299 -2.7009 0.0100 22 1 -0.3633 0.0041 1.0277 23 1 -0.3633 0.8880 -0.5174 24 1 -0.3635 -0.8919 -0.5103 25 1 1.6568 2.1324 0.0004 26 1 3.2451 4.3218 -3.1275 27 1 4.6038 2.4414 2.1248 28 1 5.9855 1.8258 1.1865 29 1 5.1526 4.6519 1.2767 30 1 6.4355 4.0011 2.1111 31 1 5.3558 0.0105 -0.0112 32 1 4.4619 -2.7133 -0.8865 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259872279.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:45 Heat of formation + Delta-G solvation = -59.711200 kcal Electronic energy + Delta-G solvation = -16792.739832 eV Core-core repulsion = 13970.715996 eV Total energy + Delta-G solvation = -2822.023836 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.85757 -38.19693 -37.52068 -36.50899 -34.19091 -33.35157 -31.29010 -29.02683 -27.72791 -26.12444 -23.40580 -23.05272 -20.98723 -18.87360 -18.50194 -17.50194 -16.97642 -16.60381 -16.43158 -15.84395 -15.37108 -14.67288 -14.45332 -14.17307 -14.10236 -13.90638 -13.40552 -13.10053 -12.95265 -12.80191 -12.63750 -12.52039 -12.37452 -12.15426 -11.87324 -11.37955 -11.21422 -10.97298 -10.51215 -9.47475 -9.29806 -9.18960 -8.06707 -6.09058 0.31368 0.38251 1.23088 1.40773 1.44630 1.53650 2.46601 2.68945 3.24910 3.27119 3.88453 3.95230 4.24383 4.34845 4.52935 4.55313 4.64567 4.75822 4.78855 4.85989 5.00969 5.11165 5.25115 5.36253 5.48465 5.61686 5.78792 5.92113 6.02407 6.33611 6.55903 6.78667 6.89293 6.99076 7.52964 9.01441 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.007066 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.599075 B = 3961.487202 C = 4170.481800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.066 4.066 3 C -0.133 4.133 4 C -0.018 4.018 5 C 0.063 3.937 6 H 0.042 0.958 7 C -0.479 4.479 8 H 0.047 0.953 9 C 0.020 3.980 10 N -0.917 5.917 11 Si 0.940 3.060 12 H -0.270 1.270 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.088 3.912 16 N -0.842 5.842 17 C -0.145 4.145 18 C 0.114 3.886 19 O -0.495 6.495 20 C -0.096 4.096 21 Cl -0.061 7.061 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.121 0.879 26 H 0.258 0.742 27 H 0.009 0.991 28 H 0.054 0.946 29 H 0.338 0.662 30 H 0.340 0.660 31 H 0.127 0.873 32 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.933 -8.276 5.035 10.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.067 4.067 3 C -0.152 4.152 4 C -0.019 4.019 5 C 0.044 3.956 6 H 0.061 0.939 7 C -0.517 4.517 8 H 0.065 0.935 9 C -0.179 4.179 10 N -0.557 5.557 11 Si 0.768 3.232 12 H -0.194 1.194 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.043 4.043 16 N -0.372 5.372 17 C -0.164 4.164 18 C 0.069 3.931 19 O -0.307 6.307 20 C -0.123 4.123 21 Cl -0.032 7.032 22 H 0.106 0.894 23 H 0.093 0.907 24 H 0.096 0.904 25 H 0.139 0.861 26 H 0.067 0.933 27 H 0.027 0.973 28 H 0.072 0.928 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.145 0.855 32 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -3.794 -8.469 4.835 10.464 hybrid contribution 0.019 0.190 -0.720 0.745 sum -3.775 -8.279 4.115 9.986 Atomic orbital electron populations 1.20860 0.88582 1.03697 1.03609 1.19883 0.97852 0.90485 0.98462 1.21016 0.93920 0.97123 1.03109 1.20635 0.93640 0.96711 0.90944 1.17993 0.94035 0.90197 0.93335 0.93921 1.20989 1.00310 1.33677 0.96715 0.93507 1.25524 0.96034 0.94990 1.01350 1.69996 1.21202 1.35062 1.29472 0.85774 0.79204 0.77541 0.80727 1.19407 1.21249 1.21081 1.21683 0.96063 0.91160 0.95432 1.58419 1.27241 1.03920 1.47577 1.21154 1.00512 0.90727 1.03973 1.18134 0.88034 0.85990 1.00953 1.84736 1.75804 1.35244 1.34931 1.21088 0.91320 0.87461 1.12462 1.98292 1.76211 1.31500 1.97179 0.89438 0.90705 0.90448 0.86131 0.93288 0.97250 0.92755 0.85005 0.84751 0.85527 0.73681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.96 9.61 71.24 0.68 -2.27 16 2 C -0.07 -2.26 5.88 -19.86 -0.12 -2.38 16 3 C -0.13 -5.29 9.32 22.28 0.21 -5.08 16 4 C -0.02 -0.76 4.77 -19.87 -0.09 -0.86 16 5 C 0.06 2.94 2.25 -12.28 -0.03 2.91 16 6 H 0.04 2.20 6.96 -2.39 -0.02 2.19 16 7 C -0.48 -24.87 7.67 25.60 0.20 -24.68 16 8 H 0.05 2.48 7.82 -2.91 -0.02 2.46 16 9 C 0.02 1.05 5.45 84.65 0.46 1.51 16 10 N -0.92 -51.13 12.77 21.44 0.27 -50.86 16 11 Si 0.94 43.40 29.54 68.60 2.03 45.43 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 14 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 15 C 0.09 3.47 5.89 86.30 0.51 3.98 16 16 N -0.84 -31.17 9.35 -186.72 -1.75 -32.92 16 17 C -0.14 -5.70 8.80 22.36 0.20 -5.50 16 18 C 0.11 4.02 6.70 22.52 0.15 4.17 16 19 O -0.50 -14.84 12.96 -92.66 -1.20 -16.04 16 20 C -0.10 -3.25 6.33 22.41 0.14 -3.11 16 21 Cl -0.06 -1.71 26.84 -2.72 -0.07 -1.78 16 22 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.07 1.92 8.09 -2.38 -0.02 1.90 16 24 H 0.08 1.90 6.90 -2.39 -0.02 1.89 16 25 H 0.12 4.85 7.94 -2.92 -0.02 4.82 16 26 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 27 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.05 2.15 7.58 -2.39 -0.02 2.14 16 29 H 0.34 12.37 8.99 -89.69 -0.81 11.56 16 30 H 0.34 10.11 9.08 -89.69 -0.81 9.30 16 31 H 0.13 4.97 7.64 -2.91 -0.02 4.94 16 32 H 0.40 8.62 9.06 -74.05 -0.67 7.95 16 Total: -1.00 -59.56 290.13 0.47 -59.09 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -1.12 Total: 28.37 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 2.31 Total: -31.30 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -1.47 Total: -83.78 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -1.20 Total: -16.04 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.07 Total: -1.78 kcal Total: -59.56 0.47 -59.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259872279.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.619 kcal (2) G-P(sol) polarization free energy of solvation -59.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds