Wall clock time and date at job start Mon Mar 30 2020 06:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35923 * 116.99728 * 2 1 4 4 C 1.38703 * 120.06091 * 359.97438 * 3 2 1 5 5 C 1.38159 * 119.95816 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.96288 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47245 * 219.99967 * 6 5 4 8 8 N 1.46903 * 109.47262 * 340.00469 * 6 5 4 9 9 C 1.50701 * 109.46836 * 99.99953 * 6 5 4 10 10 H 1.07998 * 120.00249 * 356.31541 * 9 6 5 11 11 C 1.37885 * 119.99785 * 176.30457 * 9 6 5 12 12 N 1.31514 * 119.99988 * 353.15362 * 11 9 6 13 13 Si 1.86799 * 119.99750 * 173.15391 * 11 9 6 14 14 H 1.48501 * 109.46753 * 265.18755 * 13 11 9 15 15 H 1.48493 * 109.47262 * 25.18855 * 13 11 9 16 16 H 1.48498 * 109.46826 * 145.19199 * 13 11 9 17 17 C 1.38279 * 120.07426 * 0.26179 * 5 4 3 18 18 C 1.50694 * 119.93670 * 179.72194 * 17 5 4 19 19 C 1.38252 * 120.11926 * 359.48320 * 17 5 4 20 20 C 1.38256 * 120.03914 * 0.51550 * 19 17 5 21 21 Cl 1.73600 * 120.03344 * 179.71958 * 20 19 17 22 22 H 1.08997 * 109.47396 * 60.00606 * 1 2 3 23 23 H 1.09007 * 109.47133 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47426 * 299.99974 * 1 2 3 25 25 H 1.08005 * 120.02162 * 0.05084 * 4 3 2 26 26 H 1.00902 * 110.99910 * 66.75266 * 8 6 5 27 27 H 1.00891 * 111.00156 * 190.71051 * 8 6 5 28 28 H 0.96995 * 119.99678 * 179.97438 * 12 11 9 29 29 H 1.08995 * 109.47598 * 90.00257 * 18 17 5 30 30 H 1.09009 * 109.47035 * 209.99468 * 18 17 5 31 31 H 1.08999 * 109.47436 * 329.99740 * 18 17 5 32 32 H 1.07996 * 119.97822 * 180.22850 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2918 2.3751 -0.0005 5 6 1.9211 3.6050 -0.0011 6 6 1.1018 4.8698 -0.0022 7 1 1.5652 5.6023 -0.6630 8 7 -0.2566 4.5728 -0.4762 9 6 1.0352 5.4264 1.3966 10 1 1.4853 4.8847 2.2154 11 6 0.3997 6.6274 1.6312 12 7 -0.0296 7.3524 0.6214 13 14 0.1486 7.2246 3.3832 14 1 -1.1998 6.8198 3.8556 15 1 1.1826 6.6242 4.2638 16 1 0.2633 8.7046 3.4229 17 6 3.3020 3.6768 -0.0065 18 6 3.9853 5.0199 -0.0134 19 6 4.0569 2.5186 -0.0007 20 6 3.4322 1.2852 -0.0001 21 17 4.3802 -0.1690 -0.0002 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2131 2.3201 -0.0001 26 1 -0.7468 3.9818 0.1784 27 1 -0.7718 5.4222 -0.6526 28 1 -0.4769 8.1971 0.7865 29 1 4.1540 5.3471 1.0125 30 1 4.9414 4.9386 -0.5306 31 1 3.3549 5.7457 -0.5272 32 1 5.1353 2.5773 -0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259879923.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:16 Heat of formation + Delta-G solvation = -47.145886 kcal Electronic energy + Delta-G solvation = -16892.108078 eV Core-core repulsion = 14070.629115 eV Total energy + Delta-G solvation = -2821.478963 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.20201 -38.96467 -37.48927 -36.21223 -33.56600 -32.87801 -30.87020 -28.79857 -27.98853 -26.74260 -24.72818 -22.45295 -21.52358 -18.89334 -18.61289 -17.47644 -16.70299 -16.66375 -16.47242 -15.92087 -15.09521 -14.99319 -14.86266 -14.41446 -14.13761 -13.62222 -13.38309 -13.24020 -12.99023 -12.78280 -12.66624 -12.44485 -12.36033 -12.22509 -12.02376 -11.67097 -11.44936 -11.27445 -10.67017 -9.59413 -9.29277 -8.85990 -8.14379 -6.35076 0.34709 0.45878 1.26411 1.36039 1.40667 1.49035 2.35400 2.36761 2.77830 3.06263 3.90283 4.01815 4.17488 4.28823 4.42945 4.47712 4.48712 4.69026 4.75513 4.77599 4.94313 5.01174 5.17246 5.32308 5.34216 5.43408 5.65154 5.81699 5.97414 6.08063 6.38509 6.67159 6.83165 7.04828 7.37304 8.82821 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.025844 B = 0.006582 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.155876 B = 4252.718663 C = 4704.840093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.321 6.321 3 C 0.119 3.881 4 C -0.188 4.188 5 C -0.014 4.014 6 C 0.244 3.756 7 H 0.033 0.967 8 N -0.840 5.840 9 C -0.547 4.547 10 H 0.044 0.956 11 C 0.031 3.969 12 N -0.911 5.911 13 Si 0.949 3.051 14 H -0.276 1.276 15 H -0.275 1.275 16 H -0.283 1.283 17 C -0.124 4.124 18 C -0.095 4.095 19 C -0.074 4.074 20 C -0.093 4.093 21 Cl -0.065 7.065 22 H 0.059 0.941 23 H 0.127 0.873 24 H 0.056 0.944 25 H 0.143 0.857 26 H 0.320 0.680 27 H 0.339 0.661 28 H 0.267 0.733 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.657 -10.430 -0.909 11.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.235 6.235 3 C 0.073 3.927 4 C -0.207 4.207 5 C -0.015 4.015 6 C 0.134 3.866 7 H 0.050 0.950 8 N -0.367 5.367 9 C -0.587 4.587 10 H 0.062 0.938 11 C -0.170 4.170 12 N -0.550 5.550 13 Si 0.775 3.225 14 H -0.202 1.202 15 H -0.200 1.200 16 H -0.209 1.209 17 C -0.125 4.125 18 C -0.152 4.152 19 C -0.092 4.092 20 C -0.120 4.120 21 Cl -0.036 7.036 22 H 0.078 0.922 23 H 0.145 0.855 24 H 0.075 0.925 25 H 0.161 0.839 26 H 0.130 0.870 27 H 0.152 0.848 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.094 -10.938 -1.598 11.788 hybrid contribution -0.829 1.184 1.772 2.287 sum 3.265 -9.754 0.174 10.288 Atomic orbital electron populations 1.23318 0.76646 1.05502 1.01975 1.86058 1.23171 1.25575 1.88669 1.18750 0.90719 0.85239 0.97959 1.21087 1.00852 0.90596 1.08202 1.20222 0.93833 0.95525 0.91914 1.17829 0.86958 0.88451 0.93347 0.94964 1.59491 1.05399 1.22041 1.49760 1.21794 1.36630 1.05949 0.94305 0.93808 1.25589 0.95147 0.96034 1.00237 1.69948 1.39700 1.13757 1.31619 0.85681 0.78420 0.77390 0.80963 1.20212 1.19951 1.20871 1.19804 0.92910 0.96087 1.03658 1.20604 0.99790 0.92601 1.02179 1.20852 1.00836 0.88636 0.98925 1.20123 0.88609 0.88615 1.14696 1.98303 1.71531 1.36346 1.97408 0.92206 0.85479 0.92513 0.83945 0.86987 0.84823 0.92405 0.91797 0.89883 0.92821 0.82569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.58 16 2 O -0.32 -10.04 9.96 -92.68 -0.92 -10.97 16 3 C 0.12 4.22 6.68 22.52 0.15 4.37 16 4 C -0.19 -7.18 8.26 22.36 0.18 -7.00 16 5 C -0.01 -0.59 5.02 -19.87 -0.10 -0.69 16 6 C 0.24 11.58 2.26 43.42 0.10 11.68 16 7 H 0.03 1.72 6.38 -2.39 -0.02 1.71 16 8 N -0.84 -37.43 8.47 -174.96 -1.48 -38.91 16 9 C -0.55 -28.00 8.39 25.60 0.21 -27.79 16 10 H 0.04 2.32 7.75 -2.91 -0.02 2.29 16 11 C 0.03 1.59 5.36 84.66 0.45 2.05 16 12 N -0.91 -48.33 12.16 21.45 0.26 -48.07 16 13 Si 0.95 41.40 29.54 68.60 2.03 43.42 16 14 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 17 C -0.12 -4.69 5.87 -19.85 -0.12 -4.80 16 18 C -0.10 -3.35 9.41 71.23 0.67 -2.68 16 19 C -0.07 -2.44 9.48 22.28 0.21 -2.23 16 20 C -0.09 -3.16 6.33 22.41 0.14 -3.02 16 21 Cl -0.06 -1.90 28.50 -2.72 -0.08 -1.97 16 22 H 0.06 1.38 7.66 -2.39 -0.02 1.36 16 23 H 0.13 2.09 8.14 -2.38 -0.02 2.08 16 24 H 0.06 1.32 7.66 -2.39 -0.02 1.30 16 25 H 0.14 5.14 4.67 -2.91 -0.01 5.12 16 26 H 0.32 13.46 7.62 -89.69 -0.68 12.78 16 27 H 0.34 16.18 7.83 -89.70 -0.70 15.48 16 28 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.08 2.30 8.09 -2.38 -0.02 2.28 16 31 H 0.05 2.14 6.11 -2.39 -0.01 2.12 16 32 H 0.16 4.18 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -55.81 283.25 2.61 -53.20 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: -0.22 Total: 31.84 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 3.02 Total: -28.54 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -1.22 Total: -86.99 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.92 Total: -10.97 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.08 Total: -1.97 kcal Total: -55.81 2.61 -53.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259879923.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.054 kcal (2) G-P(sol) polarization free energy of solvation -55.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds