Wall clock time and date at job start Mon Mar 30 2020 06:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35925 * 117.00099 * 2 1 4 4 C 1.38704 * 120.05856 * 0.02562 * 3 2 1 5 5 C 1.38155 * 119.95553 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.95958 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47210 * 145.00000 * 6 5 4 8 8 N 1.46899 * 109.47483 * 24.99669 * 6 5 4 9 9 C 1.50702 * 109.46869 * 264.99707 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 6 5 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 6 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 6 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 C 1.38269 * 120.07672 * 0.27242 * 5 4 3 18 18 C 1.50697 * 119.94101 * 179.72803 * 17 5 4 19 19 C 1.38244 * 120.11795 * 359.45018 * 17 5 4 20 20 C 1.38257 * 120.04261 * 0.55081 * 19 17 5 21 21 Cl 1.73603 * 120.03846 * 179.70345 * 20 19 17 22 22 H 1.09001 * 109.47041 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46719 * 299.99555 * 1 2 3 24 24 H 1.09004 * 109.46911 * 59.99527 * 1 2 3 25 25 H 1.07998 * 120.02397 * 359.97438 * 4 3 2 26 26 H 1.00902 * 111.00292 * 176.04974 * 8 6 5 27 27 H 1.00903 * 111.00048 * 300.00270 * 8 6 5 28 28 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.47535 * 90.00256 * 18 17 5 30 30 H 1.09001 * 109.47123 * 209.99894 * 18 17 5 31 31 H 1.09005 * 109.47080 * 329.99955 * 18 17 5 32 32 H 1.08009 * 119.97972 * 180.29719 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2920 2.3751 0.0005 5 6 1.9214 3.6050 0.0011 6 6 1.1020 4.8698 0.0022 7 1 1.6112 5.6320 0.5920 8 7 -0.2175 4.5979 0.5878 9 6 0.9323 5.3596 -1.4128 10 1 1.3733 4.8098 -2.2312 11 6 0.2088 6.5063 -1.6633 12 7 -0.3285 7.1756 -0.6668 13 14 -0.0080 7.1092 -3.4179 14 1 -1.2337 6.5063 -4.0006 15 1 -0.1348 8.5888 -3.4209 16 1 1.1719 6.7119 -4.2273 17 6 3.3022 3.6767 -0.0046 18 6 3.9856 5.0198 -0.0102 19 6 4.0570 2.5185 0.0006 20 6 3.4323 1.2851 0.0001 21 17 4.3802 -0.1692 -0.0011 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2134 2.3202 0.0005 26 1 -0.7627 5.4439 0.6591 27 1 -0.7099 3.8939 0.0587 28 1 -0.8372 7.9825 -0.8430 29 1 4.1546 5.3458 1.0161 30 1 4.9415 4.9389 -0.5277 31 1 3.3551 5.7461 -0.5231 32 1 5.1355 2.5771 0.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259879925.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:17 Heat of formation + Delta-G solvation = -47.377541 kcal Electronic energy + Delta-G solvation = -16899.185830 eV Core-core repulsion = 14077.696822 eV Total energy + Delta-G solvation = -2821.489008 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.22133 -38.97860 -37.50032 -36.24992 -33.53695 -32.89035 -30.82749 -28.81509 -28.02046 -26.76214 -24.72101 -22.45177 -21.54489 -18.92792 -18.58715 -17.47686 -16.73653 -16.67456 -16.48903 -15.87256 -15.11586 -15.01886 -14.86127 -14.38455 -14.08637 -13.56963 -13.46691 -13.21937 -12.92154 -12.82810 -12.68301 -12.45070 -12.36859 -12.24611 -12.03260 -11.68119 -11.43525 -11.33302 -10.71300 -9.61801 -9.25614 -8.86354 -8.12116 -6.37261 0.33381 0.44465 1.25593 1.36464 1.40564 1.49168 2.34427 2.35957 2.75846 3.05340 3.87713 4.00492 4.18033 4.29513 4.41689 4.46857 4.50386 4.70511 4.74579 4.76846 4.93697 4.95739 5.13909 5.30392 5.32731 5.49997 5.64797 5.80179 5.94697 6.08034 6.36908 6.63290 6.91085 7.09112 7.38120 8.81751 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.025563 B = 0.006601 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.082980 B = 4240.474102 C = 4679.964540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.321 6.321 3 C 0.121 3.879 4 C -0.190 4.190 5 C -0.013 4.013 6 C 0.245 3.755 7 H 0.029 0.971 8 N -0.844 5.844 9 C -0.550 4.550 10 H 0.044 0.956 11 C 0.029 3.971 12 N -0.912 5.912 13 Si 0.952 3.048 14 H -0.277 1.277 15 H -0.281 1.281 16 H -0.274 1.274 17 C -0.124 4.124 18 C -0.106 4.106 19 C -0.073 4.073 20 C -0.093 4.093 21 Cl -0.064 7.064 22 H 0.128 0.872 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.140 0.860 26 H 0.347 0.653 27 H 0.316 0.684 28 H 0.268 0.732 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.332 -10.108 0.865 11.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.234 6.234 3 C 0.075 3.925 4 C -0.210 4.210 5 C -0.014 4.014 6 C 0.135 3.865 7 H 0.046 0.954 8 N -0.373 5.373 9 C -0.589 4.589 10 H 0.062 0.938 11 C -0.172 4.172 12 N -0.552 5.552 13 Si 0.778 3.222 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.199 1.199 17 C -0.125 4.125 18 C -0.162 4.162 19 C -0.092 4.092 20 C -0.120 4.120 21 Cl -0.035 7.035 22 H 0.146 0.854 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.158 0.842 26 H 0.162 0.838 27 H 0.126 0.874 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.791 -10.496 1.574 11.644 hybrid contribution -0.911 0.970 -1.783 2.225 sum 3.880 -9.526 -0.209 10.288 Atomic orbital electron populations 1.23327 0.76651 1.05548 1.01953 1.86061 1.23158 1.25558 1.88650 1.18732 0.90743 0.85180 0.97871 1.21052 1.00683 0.90757 1.08464 1.20222 0.93896 0.95478 0.91808 1.17831 0.87589 0.88689 0.92361 0.95360 1.59548 1.06759 1.15362 1.55672 1.21856 1.33759 1.09713 0.93619 0.93751 1.25622 0.94972 0.96051 1.00550 1.69821 1.35194 1.18074 1.32092 0.85646 0.78404 0.77441 0.80677 1.20266 1.20694 1.19873 1.19819 0.92805 0.96209 1.03637 1.20717 1.00239 0.92965 1.02316 1.20868 1.00870 0.88617 0.98801 1.20122 0.88577 0.88669 1.14678 1.98304 1.71503 1.36313 1.97404 0.85416 0.92184 0.92571 0.84248 0.83773 0.87366 0.92253 0.91101 0.89985 0.92144 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.57 16 2 O -0.32 -10.06 9.96 -92.70 -0.92 -10.99 16 3 C 0.12 4.28 6.68 22.52 0.15 4.43 16 4 C -0.19 -7.31 8.26 22.36 0.18 -7.13 16 5 C -0.01 -0.56 4.99 -19.88 -0.10 -0.66 16 6 C 0.25 11.76 2.27 43.42 0.10 11.86 16 7 H 0.03 1.51 7.00 -2.38 -0.02 1.49 16 8 N -0.84 -38.71 8.78 -174.95 -1.54 -40.24 16 9 C -0.55 -28.32 7.91 25.60 0.20 -28.11 16 10 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 11 C 0.03 1.48 5.38 84.66 0.46 1.94 16 12 N -0.91 -48.33 11.53 21.45 0.25 -48.09 16 13 Si 0.95 41.45 29.54 68.60 2.03 43.47 16 14 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 15 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 C -0.12 -4.66 5.88 -19.86 -0.12 -4.78 16 18 C -0.11 -3.64 9.21 71.24 0.66 -2.99 16 19 C -0.07 -2.40 9.48 22.28 0.21 -2.18 16 20 C -0.09 -3.15 6.33 22.41 0.14 -3.01 16 21 Cl -0.06 -1.87 28.50 -2.72 -0.08 -1.95 16 22 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.06 1.39 7.66 -2.39 -0.02 1.37 16 24 H 0.06 1.32 7.66 -2.39 -0.02 1.30 16 25 H 0.14 5.09 4.53 -2.91 -0.01 5.07 16 26 H 0.35 17.15 7.07 -89.69 -0.63 16.52 16 27 H 0.32 13.60 7.20 -89.69 -0.65 12.95 16 28 H 0.27 13.57 8.31 -92.70 -0.77 12.80 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.08 2.30 8.09 -2.39 -0.02 2.28 16 31 H 0.06 2.46 6.14 -2.38 -0.01 2.45 16 32 H 0.16 4.15 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -56.10 281.57 2.62 -53.48 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: -0.11 Total: 33.37 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 3.00 Total: -29.06 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -1.29 Total: -88.33 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.92 Total: -10.99 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.08 Total: -1.95 kcal Total: -56.10 2.62 -53.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259879925.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.100 kcal (2) G-P(sol) polarization free energy of solvation -56.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds